Wall clock time and date at job start Sat Apr 11 2020 07:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99445 * 2 1 4 4 H 1.09003 * 110.64203 * 26.86042 * 3 2 1 5 5 C 1.54324 * 110.87047 * 263.60931 * 3 2 1 6 6 N 1.47017 * 107.26936 * 219.37420 * 5 3 2 7 7 C 1.36945 * 125.64898 * 178.99721 * 6 5 3 8 8 H 1.07996 * 120.00243 * 179.97438 * 7 6 5 9 9 C 1.38814 * 119.99326 * 359.97438 * 7 6 5 10 10 N 1.31612 * 120.00683 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99521 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47204 * 89.99743 * 11 9 7 13 13 H 1.48498 * 109.47261 * 209.99921 * 11 9 7 14 14 H 1.48507 * 109.47301 * 329.99935 * 11 9 7 15 15 C 1.47469 * 108.72791 * 358.97662 * 6 5 3 16 16 C 1.54909 * 104.80522 * 24.07011 * 15 6 5 17 17 H 1.09002 * 111.00767 * 81.14076 * 16 15 6 18 18 N 1.46501 * 111.00357 * 204.95000 * 16 15 6 19 19 C 1.34777 * 120.00193 * 270.42361 * 18 16 15 20 20 O 1.21614 * 119.99936 * 359.97438 * 19 18 16 21 21 C 1.47391 * 120.00050 * 179.97438 * 19 18 16 22 22 N 1.31569 * 126.82563 * 0.02562 * 21 19 18 23 23 N 1.28380 * 111.97030 * 180.02562 * 22 21 19 24 24 C 1.46498 * 124.37348 * 180.02562 * 23 22 21 25 25 C 1.37047 * 111.25417 * 0.02562 * 23 22 21 26 26 C 1.39129 * 134.73148 * 180.02562 * 25 23 22 27 27 C 1.36675 * 119.79009 * 179.97438 * 26 25 23 28 28 C 1.38906 * 120.89417 * 0.02562 * 27 26 25 29 29 C 1.36719 * 120.52071 * 0.24239 * 28 27 26 30 30 C 1.39192 * 119.51041 * 359.49030 * 29 28 27 31 31 H 1.09001 * 109.46759 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47415 * 299.99502 * 1 2 3 33 33 H 1.09002 * 109.47715 * 59.99862 * 1 2 3 34 34 H 1.08999 * 109.88285 * 338.79661 * 5 3 2 35 35 H 1.09005 * 109.87883 * 99.95868 * 5 3 2 36 36 H 0.96998 * 120.00234 * 180.02562 * 10 9 7 37 37 H 1.08993 * 110.34800 * 265.25706 * 15 6 5 38 38 H 1.08992 * 110.40571 * 142.91497 * 15 6 5 39 39 H 0.97000 * 120.00145 * 90.41658 * 18 16 15 40 40 H 1.08997 * 109.46862 * 269.99494 * 24 23 22 41 41 H 1.08991 * 109.47337 * 30.00235 * 24 23 22 42 42 H 1.08997 * 109.47191 * 150.00218 * 24 23 22 43 43 H 1.07999 * 120.10353 * 359.97047 * 26 25 23 44 44 H 1.08002 * 119.55753 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.73658 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.24444 * 179.74434 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3350 2.0267 0.4609 5 6 2.3803 1.7426 -1.4330 6 7 3.6666 2.4502 -1.3549 7 6 4.3513 2.9810 -2.4156 8 1 5.2927 3.4846 -2.2531 9 6 3.8350 2.8716 -3.6995 10 7 2.6880 2.2574 -3.8976 11 14 4.7685 3.5962 -5.1462 12 1 5.6945 2.5755 -5.6991 13 1 3.8061 4.0128 -6.1977 14 1 5.5469 4.7765 -4.6920 15 6 4.0979 2.4945 0.0546 16 6 3.3815 1.2960 0.7255 17 1 3.9169 0.3654 0.5369 18 7 3.2163 1.5211 2.1637 19 6 4.1770 1.1259 3.0224 20 8 5.1808 0.5819 2.6035 21 6 4.0110 1.3530 4.4693 22 7 2.9867 1.9243 5.0654 23 7 3.1395 1.9753 6.3391 24 6 2.1646 2.5545 7.2666 25 6 4.3325 1.4180 6.7190 26 6 4.9763 1.2179 7.9361 27 6 6.1999 0.6098 7.9651 28 6 6.8141 0.1868 6.7932 29 6 6.2062 0.3759 5.5833 30 6 4.9571 0.9881 5.5318 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.4773 0.8666 -2.0743 35 1 1.6135 2.4098 -1.8268 36 1 2.3275 2.1807 -4.7948 37 1 3.7854 3.4305 0.5173 38 1 5.1793 2.3779 0.1250 39 1 2.4156 1.9547 2.4979 40 1 2.3799 3.6140 7.4051 41 1 1.1608 2.4380 6.8581 42 1 2.2278 2.0425 8.2267 43 1 4.5105 1.5422 8.8550 44 1 6.6961 0.4560 8.9120 45 1 7.7815 -0.2913 6.8378 46 1 6.6896 0.0490 4.6746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082334981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:05 Heat of formation + Delta-G solvation = 28.478659 kcal Electronic energy + Delta-G solvation = -29820.120153 eV Core-core repulsion = 25711.705347 eV Total energy + Delta-G solvation = -4108.414807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -43.52201 -40.99214 -39.55125 -38.74372 -37.52967 -35.67805 -34.64916 -33.63802 -31.51808 -31.17468 -30.62677 -29.25845 -27.98423 -27.51404 -26.11332 -24.80658 -23.63401 -23.03999 -22.25582 -21.96155 -21.05752 -19.35655 -18.84069 -18.28781 -17.81233 -17.37556 -17.32253 -17.01322 -16.50247 -16.18458 -15.93684 -15.84797 -15.80917 -15.32698 -15.08320 -15.04978 -14.77116 -14.45242 -14.08132 -13.90730 -13.63604 -13.54982 -13.25812 -13.01767 -12.90207 -12.85119 -12.75382 -12.61952 -12.34442 -12.21277 -12.07716 -12.02226 -11.87340 -11.67393 -11.32599 -11.00820 -10.78209 -10.63828 -10.19738 -9.77726 -9.00434 -8.96192 -7.87876 -5.26427 -0.23757 0.36083 0.83175 1.36984 1.45514 1.48587 1.56908 1.91198 2.16209 2.46004 2.74049 2.80910 3.11784 3.31479 3.41565 3.48373 3.64330 3.84610 3.88790 4.03696 4.08550 4.14666 4.33108 4.35735 4.40373 4.41346 4.44177 4.50419 4.57218 4.62951 4.67011 4.76437 4.80319 4.84881 4.91416 5.03254 5.21190 5.28112 5.34677 5.40812 5.46753 5.58286 5.64156 5.70804 5.98422 6.12120 6.28236 6.33813 6.75644 7.03328 7.06762 7.68081 8.31173 9.21883 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.002583 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.153207 B =10839.517454 C =11774.456706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.077 3.923 4 H 0.094 0.906 5 C 0.177 3.823 6 N -0.621 5.621 7 C -0.248 4.248 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.949 5.949 11 Si 0.983 3.017 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.150 3.850 17 H 0.080 0.920 18 N -0.689 5.689 19 C 0.606 3.394 20 O -0.565 6.565 21 C -0.035 4.035 22 N -0.206 5.206 23 N -0.306 5.306 24 C 0.079 3.921 25 C 0.051 3.949 26 C -0.108 4.108 27 C -0.082 4.082 28 C -0.131 4.131 29 C -0.080 4.080 30 C -0.138 4.138 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.249 0.751 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.415 0.585 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.167 0.833 44 H 0.172 0.828 45 H 0.152 0.848 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 -1.058 31.032 31.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.018 3.982 4 H 0.112 0.888 5 C 0.051 3.949 6 N -0.348 5.348 7 C -0.376 4.376 8 H 0.101 0.899 9 C -0.255 4.255 10 N -0.598 5.598 11 Si 0.811 3.189 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.005 3.995 16 C 0.044 3.956 17 H 0.099 0.901 18 N -0.340 5.340 19 C 0.392 3.608 20 O -0.442 6.442 21 C -0.203 4.203 22 N -0.039 5.039 23 N -0.101 5.101 24 C -0.059 4.059 25 C -0.061 4.061 26 C -0.129 4.129 27 C -0.102 4.102 28 C -0.150 4.150 29 C -0.100 4.100 30 C -0.145 4.145 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.252 0.748 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.185 0.815 44 H 0.189 0.811 45 H 0.170 0.830 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.155 -1.024 30.401 30.581 hybrid contribution 0.460 0.300 -1.411 1.514 sum -2.696 -0.724 28.989 29.124 Atomic orbital electron populations 1.23000 0.79259 1.03967 1.00765 1.87892 1.21848 1.26886 1.94933 1.23487 0.93389 0.85295 0.96029 0.88782 1.21276 0.87210 0.94790 0.91604 1.44532 1.22108 1.66275 1.01934 1.19461 1.02818 1.29476 0.85871 0.89892 1.25695 0.98457 1.01411 0.99973 1.70154 1.20599 1.48286 1.20724 0.85018 0.77281 0.78087 0.78550 1.21378 1.21588 1.19247 1.21907 0.97395 0.95443 0.84712 1.21935 0.96139 0.98765 0.78759 0.90145 1.45512 1.22235 1.60809 1.05477 1.16953 0.82661 0.77637 0.83589 1.90780 1.30275 1.44600 1.78497 1.22383 0.94863 1.09672 0.93352 1.72767 1.23164 1.14255 0.93682 1.45657 1.15792 1.45658 1.02964 1.22604 0.91109 1.00532 0.91610 1.19497 0.88727 1.01463 0.96436 1.20262 0.96006 1.02339 0.94290 1.21227 0.93950 0.95467 0.99582 1.21214 1.01453 1.00925 0.91363 1.20470 0.92628 0.97232 0.99668 1.19723 0.97564 1.05785 0.91462 0.88018 0.91984 0.94323 0.96134 0.95701 0.94125 0.94271 0.94325 0.74795 0.88325 0.87609 0.85827 0.81529 0.81104 0.83044 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.85 113.37 1.23 1.96 16 2 O -0.40 -15.27 10.44 -148.98 -1.56 -16.82 16 3 C 0.08 3.09 3.08 31.78 0.10 3.18 16 4 H 0.09 3.18 7.68 -2.39 -0.02 3.16 16 5 C 0.18 9.18 5.15 86.73 0.45 9.63 16 6 N -0.62 -34.00 3.40 -691.90 -2.35 -36.35 16 7 C -0.25 -14.57 10.28 84.03 0.86 -13.71 16 8 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 9 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 10 N -0.95 -58.30 10.31 21.65 0.22 -58.08 16 11 Si 0.98 47.11 29.55 68.60 2.03 49.13 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 15 C 0.13 6.08 6.93 86.85 0.60 6.68 16 16 C 0.15 6.17 3.09 46.38 0.14 6.31 16 17 H 0.08 3.78 7.63 -2.39 -0.02 3.76 16 18 N -0.69 -23.50 5.21 -439.24 -2.29 -25.79 16 19 C 0.61 22.26 7.81 86.65 0.68 22.94 16 20 O -0.56 -24.67 16.09 -4.07 -0.07 -24.73 16 21 C -0.04 -1.10 7.32 43.86 0.32 -0.78 16 22 N -0.21 -5.29 11.52 -44.88 -0.52 -5.80 16 23 N -0.31 -5.81 3.74 -361.15 -1.35 -7.16 16 24 C 0.08 0.54 11.24 127.77 1.44 1.98 16 25 C 0.05 1.03 6.85 39.19 0.27 1.30 16 26 C -0.11 -1.34 9.94 22.12 0.22 -1.12 16 27 C -0.08 -0.95 9.96 22.06 0.22 -0.73 16 28 C -0.13 -2.22 9.98 22.07 0.22 -2.00 16 29 C -0.08 -2.06 9.87 22.14 0.22 -1.84 16 30 C -0.14 -3.90 6.34 -20.14 -0.13 -4.03 16 31 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.02 1.22 7.30 -2.39 -0.02 1.20 16 35 H 0.02 1.39 7.51 -2.38 -0.02 1.37 16 36 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.41 11.80 8.27 -92.71 -0.77 11.03 16 40 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.12 0.09 8.09 -2.39 -0.02 0.07 16 43 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 44 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 45 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.12 3.41 7.65 -2.91 -0.02 3.38 16 Total: -1.00 -83.03 387.17 1.67 -81.36 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.24 Total: 17.63 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 7.30 Total: 26.60 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -6.28 Total: -133.18 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.62 Total: -41.56 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -83.03 1.67 -81.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082334981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.843 kcal (2) G-P(sol) polarization free energy of solvation -83.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds