Wall clock time and date at job start Sat Apr 11 2020 07:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99953 * 2 1 4 4 C 1.53003 * 109.47130 * 263.30400 * 3 2 1 5 5 H 1.08995 * 112.96278 * 308.50056 * 4 3 2 6 6 C 1.53947 * 113.76741 * 176.81735 * 4 3 2 7 7 C 1.53947 * 86.28924 * 222.09229 * 6 4 3 8 8 N 1.47582 * 113.76859 * 80.17632 * 4 3 2 9 9 C 1.36940 * 134.49085 * 318.93193 * 8 4 3 10 10 H 1.07994 * 119.99983 * 331.80764 * 9 8 4 11 11 C 1.38813 * 119.99505 * 151.80889 * 9 8 4 12 12 N 1.31626 * 119.99734 * 168.64178 * 11 9 8 13 13 Si 1.86797 * 120.00319 * 348.64198 * 11 9 8 14 14 H 1.48503 * 109.46990 * 84.69639 * 13 11 9 15 15 H 1.48496 * 109.47250 * 204.69204 * 13 11 9 16 16 H 1.48500 * 109.47133 * 324.69475 * 13 11 9 17 17 C 1.34781 * 120.00511 * 180.02562 * 2 1 3 18 18 O 1.21625 * 120.00234 * 185.46231 * 17 2 1 19 19 C 1.47217 * 119.99615 * 5.45983 * 17 2 1 20 20 C 1.37969 * 126.81567 * 338.70855 * 19 17 2 21 21 N 1.34133 * 107.93743 * 179.97438 * 20 19 17 22 22 C 1.46509 * 125.13443 * 180.26868 * 21 20 19 23 23 N 1.39763 * 109.72724 * 0.02562 * 21 20 19 24 24 C 1.31582 * 109.05393 * 0.02562 * 23 21 20 25 25 C 1.47659 * 126.54802 * 180.02562 * 24 23 21 26 26 C 1.36013 * 125.93717 * 324.98346 * 25 24 23 27 27 C 1.40897 * 106.73943 * 179.97438 * 26 25 24 28 28 C 1.34756 * 107.03938 * 359.97438 * 27 26 25 29 29 O 1.34303 * 108.68195 * 359.76067 * 28 27 26 30 30 H 1.08999 * 109.46683 * 267.69809 * 1 2 3 31 31 H 1.08992 * 109.47181 * 27.70461 * 1 2 3 32 32 H 1.09001 * 109.46889 * 147.70719 * 1 2 3 33 33 H 1.08998 * 109.46646 * 23.30273 * 3 2 1 34 34 H 1.08995 * 109.47353 * 143.30332 * 3 2 1 35 35 H 1.08996 * 113.74284 * 336.43903 * 6 4 3 36 36 H 1.09002 * 113.73779 * 107.63816 * 6 4 3 37 37 H 1.09003 * 113.76865 * 137.91120 * 7 6 4 38 38 H 1.09003 * 113.76937 * 269.19661 * 7 6 4 39 39 H 0.96999 * 120.00022 * 179.97438 * 12 11 9 40 40 H 1.08000 * 126.02915 * 359.97438 * 20 19 17 41 41 H 1.08998 * 109.46511 * 269.71722 * 22 21 20 42 42 H 1.08993 * 109.46933 * 29.71944 * 22 21 20 43 43 H 1.09000 * 109.46895 * 149.72084 * 22 21 20 44 44 H 1.08001 * 126.62927 * 359.93012 * 26 25 24 45 45 H 1.08001 * 126.48102 * 179.97438 * 27 26 25 46 46 H 1.08000 * 125.65763 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5982 1.6264 -1.4327 5 1 3.1116 0.8135 -1.9461 6 6 3.3091 2.9861 -1.5571 7 6 2.4481 3.2086 -2.8137 8 7 1.5084 2.2336 -2.2211 9 6 0.1668 1.9909 -2.3501 10 1 -0.2195 0.9951 -2.1907 11 6 -0.6963 3.0249 -2.6859 12 7 -1.9393 2.7595 -3.0283 13 14 -0.0941 4.7927 -2.6517 14 1 0.5730 5.1134 -3.9392 15 1 -1.2484 5.7052 -2.4517 16 1 0.8721 4.9651 -1.5372 17 6 2.1390 -1.1672 -0.0005 18 8 3.3511 -1.1696 0.0997 19 6 1.4079 -2.4392 -0.1224 20 6 0.0751 -2.6571 0.1597 21 7 -0.1929 -3.9486 -0.0837 22 6 -1.5018 -4.5846 0.0859 23 7 0.9638 -4.5947 -0.5287 24 6 1.9525 -3.7273 -0.5672 25 6 3.3439 -3.9978 -0.9811 26 6 4.0320 -5.1505 -0.7624 27 6 5.3125 -4.9710 -1.3220 28 6 5.3428 -3.7314 -1.8495 29 8 4.1500 -3.1483 -1.6467 30 1 -0.3633 -0.0413 1.0269 31 1 -0.3633 0.9098 -0.4777 32 1 -0.3633 -0.8687 -0.5490 33 1 1.5617 2.0553 0.4065 34 1 3.0927 1.1715 0.6141 35 1 3.0839 3.6752 -0.7431 36 1 4.3765 2.9060 -1.7629 37 1 2.0428 4.2172 -2.8956 38 1 2.9173 2.8626 -3.7347 39 1 -2.5426 3.4821 -3.2625 40 1 -0.6283 -1.9181 0.5139 41 1 -1.5854 -4.9795 1.0984 42 1 -2.2879 -3.8488 -0.0833 43 1 -1.6058 -5.3988 -0.6313 44 1 3.6675 -6.0325 -0.2569 45 1 6.1177 -5.6909 -1.3272 46 1 6.1849 -3.2828 -2.3555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085589447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:29 Heat of formation + Delta-G solvation = 154.501556 kcal Electronic energy + Delta-G solvation = -30950.239679 eV Core-core repulsion = 26847.289635 eV Total energy + Delta-G solvation = -4102.950044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35157 -41.15970 -39.18859 -37.84689 -34.93015 -33.76751 -32.77899 -32.38973 -31.07067 -29.64148 -28.75724 -27.85871 -26.84975 -26.00287 -23.58891 -23.13579 -22.26690 -21.95056 -21.09246 -20.05364 -19.34988 -18.87647 -17.41969 -17.13918 -16.58291 -16.15255 -15.96452 -15.68103 -15.56030 -15.20347 -14.90353 -14.74400 -14.20063 -13.80539 -13.42418 -13.26563 -13.01450 -12.89171 -12.81372 -12.72933 -12.64752 -12.44485 -12.36754 -12.29296 -11.49852 -11.31770 -11.29030 -11.05705 -10.92957 -10.83557 -10.37276 -10.28867 -9.98171 -9.72999 -9.70475 -9.43749 -9.40163 -8.73508 -8.64085 -8.14229 -8.00601 -6.94858 -5.99695 -3.37336 1.25455 1.58962 2.03890 2.38062 2.83005 3.14281 3.32487 3.42792 3.46585 3.48669 3.78160 4.35519 4.42465 4.51098 4.72663 4.73937 4.91728 5.07194 5.07689 5.13050 5.18466 5.24829 5.30708 5.40820 5.43925 5.64662 5.71999 5.75702 5.85842 5.93508 5.94881 6.03202 6.06587 6.19159 6.25405 6.28843 6.42360 6.45887 6.51280 6.54466 6.60597 6.68327 6.97583 7.17109 7.19270 7.42937 7.45903 7.93834 8.29932 8.64869 8.71042 9.60603 10.38661 11.16402 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.003852 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.010519 B = 7267.066737 C = 8773.164865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.592 5.592 3 C 0.125 3.875 4 C 0.134 3.866 5 H 0.058 0.942 6 C -0.147 4.147 7 C 0.097 3.903 8 N -0.619 5.619 9 C -0.230 4.230 10 H 0.094 0.906 11 C 0.025 3.975 12 N -0.916 5.916 13 Si 0.895 3.105 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.271 1.271 17 C 0.587 3.413 18 O -0.540 6.540 19 C -0.261 4.261 20 C 0.091 3.909 21 N -0.363 5.363 22 C 0.096 3.904 23 N -0.271 5.271 24 C 0.190 3.810 25 C 0.068 3.932 26 C -0.175 4.175 27 C -0.223 4.223 28 C -0.020 4.020 29 O -0.141 6.141 30 H 0.044 0.956 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.263 0.737 40 H 0.205 0.795 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -12.976 7.922 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.323 5.323 3 C 0.001 3.999 4 C 0.027 3.973 5 H 0.075 0.925 6 C -0.186 4.186 7 C -0.027 4.027 8 N -0.347 5.347 9 C -0.357 4.357 10 H 0.111 0.889 11 C -0.173 4.173 12 N -0.560 5.560 13 Si 0.727 3.273 14 H -0.216 1.216 15 H -0.233 1.233 16 H -0.196 1.196 17 C 0.376 3.624 18 O -0.418 6.418 19 C -0.276 4.276 20 C -0.056 4.056 21 N -0.143 5.143 22 C -0.044 4.044 23 N -0.094 5.094 24 C 0.023 3.977 25 C 0.016 3.984 26 C -0.196 4.196 27 C -0.242 4.242 28 C -0.090 4.090 29 O -0.033 6.033 30 H 0.063 0.937 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.221 0.779 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.167 0.833 45 H 0.167 0.833 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.121 -13.900 7.643 16.669 hybrid contribution 0.255 1.635 -0.110 1.658 sum 5.376 -12.265 7.534 15.365 Atomic orbital electron populations 1.22804 0.79796 1.07130 1.00251 1.47440 1.07095 1.05393 1.72406 1.21766 0.96430 0.83999 0.97664 1.22698 0.88804 0.94361 0.91443 0.92471 1.23575 0.97791 0.98064 0.99170 1.22854 0.90438 0.94668 0.94734 1.46304 1.02779 1.38856 1.46790 1.18681 0.78544 0.95118 1.43338 0.88921 1.25103 0.94794 0.97900 0.99553 1.69749 1.05319 1.32176 1.48713 0.86664 0.76545 0.85734 0.78359 1.21564 1.23254 1.19621 1.17089 0.86516 0.82171 0.76645 1.90748 1.13255 1.87086 1.50744 1.21372 0.93370 0.95121 1.17739 1.23936 0.96863 0.86917 0.97860 1.48155 1.08869 1.06913 1.50391 1.22035 0.78784 0.99983 1.03628 1.77341 0.91075 1.19533 1.21406 1.20047 0.89595 0.90320 0.97744 1.18491 0.88797 0.89235 1.01918 1.21704 0.94417 0.98150 1.05363 1.21679 0.98698 0.98194 1.05667 1.24173 0.87513 0.93754 1.03558 1.84223 1.21258 1.40427 1.57408 0.93728 0.85997 0.91122 0.89858 0.90631 0.90305 0.92147 0.93841 0.94078 0.92690 0.77916 0.90249 0.88572 0.88843 0.83326 0.83269 0.77925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 7.87 59.85 0.47 1.16 16 2 N -0.59 -10.68 2.89 -182.93 -0.53 -11.21 16 3 C 0.12 2.28 5.24 -4.04 -0.02 2.26 16 4 C 0.13 2.70 4.48 -66.86 -0.30 2.40 16 5 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 6 C -0.15 -2.65 7.86 -25.79 -0.20 -2.85 16 7 C 0.10 2.08 7.56 -2.85 -0.02 2.05 16 8 N -0.62 -14.51 3.19 -169.71 -0.54 -15.05 16 9 C -0.23 -6.05 9.04 -15.06 -0.14 -6.19 16 10 H 0.09 2.53 5.98 -52.49 -0.31 2.22 16 11 C 0.03 0.70 5.50 -17.43 -0.10 0.60 16 12 N -0.92 -26.64 13.97 55.49 0.78 -25.87 16 13 Si 0.90 22.09 24.76 -169.99 -4.21 17.88 16 14 H -0.29 -7.14 7.01 56.52 0.40 -6.75 16 15 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 16 H -0.27 -6.42 6.83 56.52 0.39 -6.04 16 17 C 0.59 11.20 7.58 -12.61 -0.10 11.10 16 18 O -0.54 -11.52 14.99 -9.08 -0.14 -11.66 16 19 C -0.26 -4.47 6.01 -102.91 -0.62 -5.09 16 20 C 0.09 1.22 9.18 -16.64 -0.15 1.06 16 21 N -0.36 -4.52 3.95 -67.65 -0.27 -4.79 16 22 C 0.10 0.68 11.39 59.85 0.68 1.36 16 23 N -0.27 -4.18 12.51 34.50 0.43 -3.75 16 24 C 0.19 3.28 7.29 -80.69 -0.59 2.69 16 25 C 0.07 1.16 6.68 -36.54 -0.24 0.92 16 26 C -0.18 -2.49 10.85 -39.37 -0.43 -2.92 16 27 C -0.22 -2.73 10.89 -39.81 -0.43 -3.17 16 28 C -0.02 -0.26 12.08 29.50 0.36 0.09 16 29 O -0.14 -2.47 9.49 -9.73 -0.09 -2.57 16 30 H 0.04 0.57 7.76 -51.93 -0.40 0.17 16 31 H 0.12 2.39 4.83 -51.93 -0.25 2.14 16 32 H 0.07 1.07 4.64 -51.93 -0.24 0.83 16 33 H 0.08 1.51 8.02 -51.93 -0.42 1.09 16 34 H 0.08 1.31 7.56 -51.93 -0.39 0.92 16 35 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.97 3.77 -51.93 -0.20 0.77 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 40 H 0.20 2.10 5.09 -52.49 -0.27 1.83 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.48 8.13 -51.93 -0.42 0.05 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -35.59 373.26 -6.63 -42.22 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.86 Total: 3.68 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.83 Total: 5.49 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.13 Total: -60.68 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.23 Total: -14.23 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.21 Total: 17.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.59 -6.63 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085589447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.726 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds