Wall clock time and date at job start Sat Apr 11 2020 07:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36443 * 126.32064 * 2 1 4 4 O 1.35265 * 125.01790 * 359.97438 * 3 2 1 5 5 N 1.30717 * 109.96578 * 179.97438 * 3 2 1 6 6 C 1.35986 * 109.53952 * 0.02562 * 5 3 2 7 7 C 1.39348 * 133.40043 * 180.32761 * 6 5 3 8 8 C 1.39218 * 119.51145 * 180.11729 * 7 6 5 9 9 C 1.47666 * 119.91262 * 179.79199 * 8 7 6 10 10 O 1.21574 * 119.99885 * 359.72963 * 9 8 7 11 11 N 1.34777 * 119.99774 * 179.73010 * 9 8 7 12 12 C 1.46496 * 119.99614 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46851 * 179.97438 * 12 11 9 14 14 C 1.53782 * 113.61750 * 274.13526 * 13 12 11 15 15 C 1.53955 * 87.01865 * 220.04918 * 14 13 12 16 16 N 1.46500 * 113.53824 * 270.80577 * 15 14 13 17 17 C 1.36932 * 120.00367 * 252.50101 * 16 15 14 18 18 H 1.07994 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99818 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00523 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99682 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47337 * 59.99988 * 21 19 17 23 23 H 1.48507 * 109.47109 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47338 * 299.99781 * 21 19 17 25 25 C 1.53772 * 87.11567 * 25.36285 * 15 14 13 26 26 C 1.40072 * 120.16655 * 359.52201 * 8 7 6 27 27 C 1.36513 * 120.44051 * 0.24706 * 26 8 7 28 28 C 1.38133 * 126.32073 * 179.97438 * 2 1 3 29 29 H 1.08992 * 109.47204 * 270.00150 * 1 2 3 30 30 H 1.08998 * 109.47083 * 30.00849 * 1 2 3 31 31 H 1.09002 * 109.46601 * 150.00171 * 1 2 3 32 32 H 0.96704 * 114.00502 * 269.97775 * 4 3 2 33 33 H 1.08000 * 120.24439 * 359.89519 * 7 6 5 34 34 H 0.96996 * 119.99887 * 359.97438 * 11 9 8 35 35 H 1.09000 * 109.47287 * 299.99298 * 12 11 9 36 36 H 1.09002 * 109.47320 * 59.99900 * 12 11 9 37 37 H 1.09002 * 112.85112 * 45.33066 * 13 12 11 38 38 H 1.09002 * 113.61032 * 334.56582 * 14 13 12 39 39 H 1.08993 * 113.61288 * 105.47193 * 14 13 12 40 40 H 1.09006 * 113.73943 * 139.94472 * 15 14 13 41 41 H 0.97010 * 119.99353 * 72.49452 * 16 15 14 42 42 H 0.96998 * 120.00505 * 179.97438 * 20 19 17 43 43 H 1.09000 * 113.61715 * 220.09092 * 25 15 14 44 44 H 1.08999 * 113.62079 * 89.18508 * 25 15 14 45 45 H 1.08001 * 119.77710 * 180.27795 * 26 8 7 46 46 H 1.08008 * 119.91705 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.0993 0.0000 4 8 1.8403 2.3809 -0.0005 5 7 3.5274 0.7313 0.0005 6 6 3.6030 -0.6265 0.0004 7 6 4.6670 -1.5262 0.0065 8 6 4.4085 -2.8942 0.0018 9 6 5.5294 -3.8555 0.0036 10 8 6.6762 -3.4520 0.0043 11 7 5.2810 -5.1802 0.0045 12 6 6.3931 -6.1338 0.0069 13 6 5.8411 -7.5608 0.0081 14 6 5.5227 -8.0969 1.4138 15 6 6.1026 -9.4435 0.9440 16 7 5.1083 -10.3258 0.3283 17 6 4.6688 -11.4356 0.9993 18 1 5.0554 -11.6607 1.9822 19 6 3.7263 -12.2713 0.4160 20 7 3.2547 -11.9967 -0.7817 21 14 3.1272 -13.7857 1.3310 22 1 2.4979 -13.3737 2.6113 23 1 2.1304 -14.5053 0.4979 24 1 4.2775 -14.6823 1.6107 25 6 6.9307 -8.6429 -0.0747 26 6 3.0878 -3.3609 0.0010 27 6 2.0435 -2.4817 -0.0002 28 6 2.2832 -1.1130 0.0005 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3632 -0.8900 -0.5138 32 1 1.7151 2.7535 -0.8840 33 1 5.6848 -1.1650 0.0113 34 1 4.3660 -5.5020 0.0044 35 1 7.0045 -5.9812 -0.8825 36 1 7.0022 -5.9795 0.8975 37 1 5.0306 -7.7017 -0.7069 38 1 6.1047 -7.6228 2.2041 39 1 4.4562 -8.1335 1.6359 40 1 6.7070 -9.9479 1.6980 41 1 4.7613 -10.1237 -0.5547 42 1 2.5964 -12.5809 -1.1895 43 1 6.9994 -9.1195 -1.0526 44 1 7.8984 -8.3182 0.3078 45 1 2.8944 -4.4235 0.0019 46 1 1.0285 -2.8508 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091382555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:58 Heat of formation + Delta-G solvation = 40.714347 kcal Electronic energy + Delta-G solvation = -28344.272067 eV Core-core repulsion = 24236.387839 eV Total energy + Delta-G solvation = -4107.884227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.66170 -40.03280 -38.71213 -38.24016 -36.64393 -34.89554 -34.62125 -33.21362 -31.05762 -30.33122 -29.51687 -27.80731 -27.07370 -25.06029 -24.17047 -23.43414 -23.17898 -21.69663 -21.29043 -20.72240 -19.11572 -18.67832 -18.00325 -17.61617 -17.31398 -16.99415 -16.12657 -15.99376 -15.33098 -15.15769 -14.85903 -14.62809 -14.40121 -14.28436 -14.12737 -13.73224 -13.61729 -13.47334 -13.22125 -13.19379 -12.88044 -12.71821 -12.28088 -11.92190 -11.79578 -11.74680 -11.38154 -11.05163 -10.89618 -10.84438 -10.49817 -10.43868 -10.22959 -10.17094 -9.81844 -9.70186 -9.47373 -9.04377 -8.89660 -8.71302 -8.55717 -7.01778 -5.82574 -3.11440 0.44899 0.66162 1.71476 2.11022 2.76405 3.00734 3.27041 3.40963 3.45638 3.46350 3.64132 3.90389 4.10163 4.44091 4.54156 4.56259 4.60682 4.77604 4.83162 4.89757 4.94895 5.06420 5.10120 5.20379 5.26427 5.44010 5.62062 5.63005 5.71351 5.81659 5.87251 5.94309 5.96738 6.00450 6.08693 6.11676 6.22251 6.27896 6.37480 6.43791 6.59332 6.74097 6.89936 6.96256 7.03879 7.27787 7.51421 7.67062 8.19831 8.36700 9.47349 10.05085 10.39350 11.39753 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.001864 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.834792 B =15017.016230 C =16467.365988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.495 5.495 3 C 0.447 3.553 4 O -0.440 6.440 5 N -0.477 5.477 6 C 0.046 3.954 7 C 0.006 3.994 8 C -0.139 4.139 9 C 0.560 3.440 10 O -0.541 6.541 11 N -0.718 5.718 12 C 0.131 3.869 13 C -0.120 4.120 14 C -0.168 4.168 15 C 0.167 3.833 16 N -0.705 5.705 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.147 4.147 26 C -0.066 4.066 27 C -0.112 4.112 28 C 0.075 3.925 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.409 0.591 33 H 0.147 0.853 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.139 0.861 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 26.448 -1.017 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.197 5.197 3 C 0.144 3.856 4 O -0.242 6.242 5 N -0.207 5.207 6 C -0.072 4.072 7 C -0.014 4.014 8 C -0.145 4.145 9 C 0.347 3.653 10 O -0.420 6.420 11 N -0.369 5.369 12 C 0.008 3.992 13 C -0.139 4.139 14 C -0.210 4.210 15 C 0.054 3.946 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.187 4.187 26 C -0.086 4.086 27 C -0.133 4.133 28 C -0.035 4.035 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.267 0.733 33 H 0.165 0.835 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.157 0.843 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.997 27.149 -0.318 27.607 hybrid contribution -2.030 -1.063 -0.338 2.316 sum -7.027 26.086 -0.655 27.024 Atomic orbital electron populations 1.22016 0.75662 1.04772 1.04045 1.45599 1.07665 1.05217 1.61196 1.20367 0.83985 0.81271 1.00004 1.84828 1.86375 1.18447 1.34536 1.70724 1.15439 1.11387 1.23142 1.18617 0.92083 0.89260 1.07228 1.20376 0.98419 0.89782 0.92842 1.19659 0.93435 0.93257 1.08157 1.18043 0.88315 0.82368 0.76594 1.90780 1.22100 1.78904 1.50202 1.45958 1.10958 1.05408 1.74610 1.21512 0.88446 0.87298 1.01951 1.22717 0.99871 0.91463 0.99814 1.23915 1.01768 1.00762 0.94507 1.21100 0.90553 0.89078 0.93844 1.42161 1.46586 1.26051 1.19602 1.19250 1.18241 1.00222 0.99621 0.91043 1.24757 0.99867 0.99430 0.96830 1.69644 1.33703 1.39556 1.15206 0.86247 0.78258 0.82883 0.78661 1.21236 1.21712 1.21203 1.23436 0.97037 0.96770 1.01471 1.20806 0.90847 0.99873 0.97113 1.19575 1.00211 0.88174 1.05319 1.18811 0.90744 0.88964 1.04932 0.90293 0.89361 0.89219 0.73261 0.83506 0.76302 0.91623 0.91379 0.88891 0.91354 0.91514 0.91956 0.78118 0.93409 0.91310 0.90415 0.84335 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.26 11.10 59.85 0.66 0.93 16 2 N -0.49 -3.86 3.22 -123.31 -0.40 -4.26 16 3 C 0.45 4.12 8.98 -88.90 -0.80 3.32 16 4 O -0.44 -2.66 13.51 -17.49 -0.24 -2.90 16 5 N -0.48 -5.85 11.31 -12.25 -0.14 -5.99 16 6 C 0.05 0.55 7.21 -84.70 -0.61 -0.06 16 7 C 0.01 0.08 9.64 -38.80 -0.37 -0.30 16 8 C -0.14 -1.60 5.87 -105.00 -0.62 -2.22 16 9 C 0.56 7.57 7.76 -12.41 -0.10 7.48 16 10 O -0.54 -9.17 16.32 5.30 0.09 -9.08 16 11 N -0.72 -8.66 5.50 -61.31 -0.34 -9.00 16 12 C 0.13 1.72 5.50 -4.04 -0.02 1.69 16 13 C -0.12 -1.72 3.62 -89.80 -0.33 -2.05 16 14 C -0.17 -2.70 7.44 -25.83 -0.19 -2.89 16 15 C 0.17 3.16 4.57 -67.03 -0.31 2.86 16 16 N -0.71 -16.96 5.31 -52.55 -0.28 -17.24 16 17 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 21 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.15 -2.30 7.39 -25.92 -0.19 -2.49 16 26 C -0.07 -0.59 9.47 -39.52 -0.37 -0.97 16 27 C -0.11 -0.92 9.96 -39.94 -0.40 -1.32 16 28 C 0.08 0.73 6.87 -83.85 -0.58 0.16 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.12 8.12 -51.93 -0.42 -0.30 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.41 0.22 9.06 45.56 0.41 0.63 16 33 H 0.15 1.86 7.63 -52.49 -0.40 1.46 16 34 H 0.40 4.04 6.47 -40.82 -0.26 3.78 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 37 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.38 9.76 7.90 -40.82 -0.32 9.44 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 45 H 0.14 0.96 6.36 -52.49 -0.33 0.62 16 46 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -35.74 390.57 -9.67 -45.41 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.50 Total: 9.94 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -4.46 Total: -3.00 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.43 Total: -63.10 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.15 Total: -11.98 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.74 -9.67 -45.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091382555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.129 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds