Wall clock time and date at job start Sat Apr 11 2020 07:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35469 * 124.78737 * 2 1 4 4 C 1.36375 * 109.77104 * 180.02562 * 3 2 1 5 5 C 1.46913 * 126.76771 * 180.02562 * 4 3 2 6 6 O 1.21674 * 119.99659 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00140 * 359.97290 * 5 4 3 8 8 C 1.46505 * 120.00096 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47151 * 179.97438 * 8 7 5 10 10 N 1.46902 * 109.46862 * 180.02562 * 9 8 7 11 11 C 1.46898 * 111.00044 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47382 * 180.02562 * 11 10 9 13 13 O 1.21293 * 119.99945 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00328 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00384 * 180.02562 * 14 12 11 16 16 H 1.07993 * 119.99913 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99997 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00416 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99940 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47208 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47293 * 119.99983 * 19 17 15 22 22 H 1.48503 * 109.46896 * 239.99840 * 19 17 15 23 23 C 1.47435 * 106.46313 * 0.02562 * 4 3 2 24 24 C 1.39279 * 134.01219 * 179.97438 * 23 4 3 25 25 C 1.37750 * 119.67635 * 179.97438 * 24 23 4 26 26 C 1.38756 * 120.29885 * 0.02562 * 25 24 23 27 27 C 1.37762 * 120.63484 * 359.97438 * 26 25 24 28 28 C 1.37962 * 124.78920 * 179.70439 * 2 1 3 29 29 H 1.09002 * 109.47391 * 90.02048 * 1 2 3 30 30 H 1.09001 * 109.46813 * 330.02105 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.02232 * 1 2 3 32 32 H 1.07998 * 125.11771 * 0.04021 * 3 2 1 33 33 H 0.96995 * 120.00302 * 359.97438 * 7 5 4 34 34 H 1.08992 * 109.47206 * 300.00574 * 8 7 5 35 35 H 1.09005 * 109.46816 * 60.00497 * 8 7 5 36 36 H 1.09001 * 109.47441 * 300.00276 * 9 8 7 37 37 H 1.08999 * 109.47049 * 60.00912 * 9 8 7 38 38 H 1.00906 * 111.00292 * 56.04609 * 10 9 8 39 39 H 1.09006 * 109.46991 * 299.99944 * 11 10 9 40 40 H 1.09005 * 109.47247 * 59.99946 * 11 10 9 41 41 H 0.97005 * 119.99563 * 359.97438 * 14 12 11 42 42 H 0.97000 * 120.00569 * 180.02562 * 18 17 15 43 43 H 1.08004 * 120.15928 * 359.97438 * 24 23 4 44 44 H 1.07994 * 119.85311 * 180.02562 * 25 24 23 45 45 H 1.07998 * 119.68146 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.03548 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5551 0.7592 -0.0006 5 6 4.7093 1.6681 -0.0002 6 8 5.8392 1.2165 -0.0004 7 7 4.5168 3.0019 0.0002 8 6 5.6679 3.9082 0.0011 9 6 5.1762 5.3571 0.0007 10 7 6.3304 6.2658 0.0010 11 6 5.8958 7.6690 0.0013 12 6 7.1042 8.5693 0.0010 13 8 8.2181 8.0893 0.0010 14 7 6.9474 9.9079 0.0017 15 6 8.0468 10.7269 0.0008 16 1 9.0385 10.2995 0.0000 17 6 7.8850 12.1070 0.0021 18 7 6.6782 12.6271 0.0036 19 14 9.3830 13.2230 0.0017 20 1 10.6164 12.3960 0.0005 21 1 9.3607 14.0811 -1.2100 22 1 9.3628 14.0791 1.2149 23 6 3.5923 -0.7146 -0.0016 24 6 4.6181 -1.6568 -0.0029 25 6 4.3108 -2.9996 -0.0031 26 6 2.9868 -3.4147 -0.0025 27 6 1.9623 -2.4937 -0.0011 28 6 2.2521 -1.1330 0.0058 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 1.8668 2.1268 0.0006 33 1 3.6161 3.3620 -0.0001 34 1 6.2708 3.7289 0.8912 35 1 6.2716 3.7296 -0.8888 36 1 4.5735 5.5361 -0.8897 37 1 4.5723 5.5360 0.8903 38 1 6.9403 6.0760 -0.7801 39 1 5.2975 7.8642 -0.8887 40 1 5.2973 7.8638 0.8914 41 1 6.0565 10.2918 0.0021 42 1 6.5652 13.5905 0.0042 43 1 5.6494 -1.3360 -0.0039 44 1 5.1039 -3.7325 -0.0037 45 1 2.7573 -4.4700 -0.0022 46 1 0.9352 -2.8276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130951310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:38 Heat of formation + Delta-G solvation = -6.263369 kcal Electronic energy + Delta-G solvation = -27561.775396 eV Core-core repulsion = 23451.854062 eV Total energy + Delta-G solvation = -4109.921334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.89368 -39.36945 -38.29995 -37.47657 -36.21644 -34.30665 -33.74836 -33.31020 -31.23774 -30.67169 -30.00296 -28.90616 -27.22397 -25.85842 -24.03142 -23.30782 -22.62904 -21.90971 -21.59852 -19.92489 -19.27513 -18.05760 -17.86368 -17.05482 -16.34847 -16.09485 -15.97394 -15.91232 -15.77448 -15.65142 -14.98393 -14.55010 -14.43801 -14.31256 -14.11963 -13.84084 -13.63826 -13.43182 -13.26270 -13.15538 -13.06248 -12.97604 -12.38229 -11.99961 -11.87854 -11.74211 -11.51606 -11.44189 -11.39104 -11.29467 -11.04640 -10.33743 -10.22584 -10.03149 -9.98067 -9.52166 -9.17304 -8.64628 -8.49490 -8.11664 -8.05783 -7.96449 -6.42082 -3.82760 0.63653 1.21515 1.70388 2.20039 2.98700 3.16800 3.21108 3.27570 3.35318 3.66894 3.90209 4.09675 4.13583 4.17134 4.29005 4.41494 4.56403 4.62828 4.77504 4.79243 4.86159 4.90482 5.00589 5.13110 5.19341 5.21029 5.26647 5.33793 5.37340 5.41563 5.73032 5.73678 5.88966 5.93162 5.98770 6.06937 6.20358 6.22984 6.29941 6.34065 6.37611 6.68381 6.77960 7.11760 7.40812 7.55611 7.58848 8.06377 8.18887 8.60905 9.17950 9.53802 10.05241 10.75733 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.001415 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.370353 B =19782.306643 C =20651.596005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.473 5.473 3 C 0.106 3.894 4 C -0.224 4.224 5 C 0.589 3.411 6 O -0.538 6.538 7 N -0.729 5.729 8 C 0.122 3.878 9 C 0.050 3.950 10 N -0.666 5.666 11 C 0.053 3.947 12 C 0.440 3.560 13 O -0.581 6.581 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.062 4.062 24 C -0.061 4.061 25 C -0.142 4.142 26 C -0.099 4.099 27 C -0.128 4.128 28 C 0.085 3.915 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.177 0.823 33 H 0.395 0.605 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.353 0.647 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.833 -27.985 -0.861 34.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.154 5.154 3 C -0.026 4.026 4 C -0.235 4.235 5 C 0.377 3.623 6 O -0.415 6.415 7 N -0.381 5.381 8 C -0.001 4.001 9 C -0.080 4.080 10 N -0.299 5.299 11 C -0.080 4.080 12 C 0.225 3.775 13 O -0.465 6.465 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.122 0.878 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.067 4.067 24 C -0.080 4.080 25 C -0.161 4.161 26 C -0.119 4.119 27 C -0.149 4.149 28 C -0.019 4.019 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.194 0.806 33 H 0.228 0.772 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.173 0.827 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.561 -28.435 -0.183 33.957 hybrid contribution -0.935 1.354 -0.892 1.871 sum -19.495 -27.081 -1.074 33.386 Atomic orbital electron populations 1.22083 0.76459 1.04751 1.03566 1.43582 1.06405 1.04336 1.61124 1.22066 0.89844 0.91550 0.99121 1.20040 0.91954 0.92617 1.18927 1.17158 0.87891 0.81220 0.76001 1.90796 1.24122 1.76586 1.50039 1.45717 1.09955 1.05746 1.76663 1.21263 0.87902 0.87427 1.03545 1.22079 0.93550 0.91514 1.00887 1.59920 1.16312 1.01962 1.51691 1.21667 0.96866 0.88186 1.01282 1.19787 0.89984 0.83128 0.84568 1.90538 1.25862 1.74880 1.55230 1.41860 1.09688 1.04091 1.64417 1.19771 0.88472 0.87191 1.47407 0.87813 1.25259 0.97957 0.97405 0.97314 1.69617 1.21118 1.12880 1.50770 0.85796 0.81223 0.79633 0.77681 1.19174 1.20783 1.20747 1.18743 0.92075 0.91505 1.04348 1.20751 0.99182 0.91553 0.96511 1.21009 0.96444 0.95496 1.03193 1.20834 0.92297 0.98892 0.99840 1.19977 0.99604 0.88868 1.06412 1.18265 0.89716 0.88244 1.05648 0.90693 0.89383 0.89694 0.80623 0.77159 0.90100 0.91289 0.94995 0.90521 0.82748 0.93755 0.89483 0.77477 0.91942 0.84752 0.85661 0.85611 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 10.99 59.85 0.66 0.84 16 2 N -0.47 -3.17 3.14 -121.59 -0.38 -3.55 16 3 C 0.11 0.73 10.76 -16.62 -0.18 0.55 16 4 C -0.22 -2.40 6.27 -103.31 -0.65 -3.05 16 5 C 0.59 7.45 7.80 -12.75 -0.10 7.35 16 6 O -0.54 -8.97 16.16 5.21 0.08 -8.89 16 7 N -0.73 -7.18 5.54 -61.54 -0.34 -7.52 16 8 C 0.12 1.44 5.93 -4.04 -0.02 1.41 16 9 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 10 N -0.67 -10.54 6.13 -115.05 -0.70 -11.25 16 11 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 12 C 0.44 10.37 7.82 -10.99 -0.09 10.28 16 13 O -0.58 -15.91 15.78 5.55 0.09 -15.82 16 14 N -0.56 -14.24 5.29 -10.97 -0.06 -14.30 16 15 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 16 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 19 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 C -0.06 -0.71 6.27 -104.95 -0.66 -1.37 16 24 C -0.06 -0.69 9.85 -39.37 -0.39 -1.08 16 25 C -0.14 -1.24 10.03 -39.57 -0.40 -1.63 16 26 C -0.10 -0.73 10.01 -39.56 -0.40 -1.13 16 27 C -0.13 -0.96 9.91 -39.43 -0.39 -1.35 16 28 C 0.08 0.77 6.79 -83.96 -0.57 0.20 16 29 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 0.06 8.13 -51.93 -0.42 -0.36 16 31 H 0.08 0.14 8.03 -51.93 -0.42 -0.28 16 32 H 0.18 0.50 7.38 -52.49 -0.39 0.11 16 33 H 0.39 2.50 7.35 -40.82 -0.30 2.20 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.13 1.63 7.45 -52.48 -0.39 1.23 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.12 0.58 8.02 -52.49 -0.42 0.16 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -36.86 396.80 -9.41 -46.27 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.31 Total: 12.31 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -3.47 Total: 4.44 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.76 Total: -60.34 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.17 Total: -24.71 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.86 -9.41 -46.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130951310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.007 kcal (2) G-P(sol) polarization free energy of solvation -36.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds