Wall clock time and date at job start Sat Apr 11 2020 07:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35469 * 124.78737 * 2 1 4 4 C 1.36375 * 109.77104 * 180.02562 * 3 2 1 5 5 C 1.46913 * 126.76771 * 180.02562 * 4 3 2 6 6 O 1.21674 * 119.99659 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00140 * 359.97290 * 5 4 3 8 8 C 1.46505 * 120.00096 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47151 * 179.97438 * 8 7 5 10 10 N 1.46902 * 109.46862 * 180.02562 * 9 8 7 11 11 C 1.46898 * 111.00044 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47382 * 180.02562 * 11 10 9 13 13 O 1.21293 * 119.99945 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00328 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00384 * 180.02562 * 14 12 11 16 16 H 1.07993 * 119.99913 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99997 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00416 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99940 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47208 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47293 * 119.99983 * 19 17 15 22 22 H 1.48503 * 109.46896 * 239.99840 * 19 17 15 23 23 C 1.47435 * 106.46313 * 0.02562 * 4 3 2 24 24 C 1.39279 * 134.01219 * 179.97438 * 23 4 3 25 25 C 1.37750 * 119.67635 * 179.97438 * 24 23 4 26 26 C 1.38756 * 120.29885 * 0.02562 * 25 24 23 27 27 C 1.37762 * 120.63484 * 359.97438 * 26 25 24 28 28 C 1.37962 * 124.78920 * 179.70439 * 2 1 3 29 29 H 1.09002 * 109.47391 * 90.02048 * 1 2 3 30 30 H 1.09001 * 109.46813 * 330.02105 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.02232 * 1 2 3 32 32 H 1.07998 * 125.11771 * 0.04021 * 3 2 1 33 33 H 0.96995 * 120.00302 * 359.97438 * 7 5 4 34 34 H 1.08992 * 109.47206 * 300.00574 * 8 7 5 35 35 H 1.09005 * 109.46816 * 60.00497 * 8 7 5 36 36 H 1.09001 * 109.47441 * 300.00276 * 9 8 7 37 37 H 1.08999 * 109.47049 * 60.00912 * 9 8 7 38 38 H 1.00906 * 111.00292 * 56.04609 * 10 9 8 39 39 H 1.09006 * 109.46991 * 299.99944 * 11 10 9 40 40 H 1.09005 * 109.47247 * 59.99946 * 11 10 9 41 41 H 0.97005 * 119.99563 * 359.97438 * 14 12 11 42 42 H 0.97000 * 120.00569 * 180.02562 * 18 17 15 43 43 H 1.08004 * 120.15928 * 359.97438 * 24 23 4 44 44 H 1.07994 * 119.85311 * 180.02562 * 25 24 23 45 45 H 1.07998 * 119.68146 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.03548 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5551 0.7592 -0.0006 5 6 4.7093 1.6681 -0.0002 6 8 5.8392 1.2165 -0.0004 7 7 4.5168 3.0019 0.0002 8 6 5.6679 3.9082 0.0011 9 6 5.1762 5.3571 0.0007 10 7 6.3304 6.2658 0.0010 11 6 5.8958 7.6690 0.0013 12 6 7.1042 8.5693 0.0010 13 8 8.2181 8.0893 0.0010 14 7 6.9474 9.9079 0.0017 15 6 8.0468 10.7269 0.0008 16 1 9.0385 10.2995 0.0000 17 6 7.8850 12.1070 0.0021 18 7 6.6782 12.6271 0.0036 19 14 9.3830 13.2230 0.0017 20 1 10.6164 12.3960 0.0005 21 1 9.3607 14.0811 -1.2100 22 1 9.3628 14.0791 1.2149 23 6 3.5923 -0.7146 -0.0016 24 6 4.6181 -1.6568 -0.0029 25 6 4.3108 -2.9996 -0.0031 26 6 2.9868 -3.4147 -0.0025 27 6 1.9623 -2.4937 -0.0011 28 6 2.2521 -1.1330 0.0058 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 1.8668 2.1268 0.0006 33 1 3.6161 3.3620 -0.0001 34 1 6.2708 3.7289 0.8912 35 1 6.2716 3.7296 -0.8888 36 1 4.5735 5.5361 -0.8897 37 1 4.5723 5.5360 0.8903 38 1 6.9403 6.0760 -0.7801 39 1 5.2975 7.8642 -0.8887 40 1 5.2973 7.8638 0.8914 41 1 6.0565 10.2918 0.0021 42 1 6.5652 13.5905 0.0042 43 1 5.6494 -1.3360 -0.0039 44 1 5.1039 -3.7325 -0.0037 45 1 2.7573 -4.4700 -0.0022 46 1 0.9352 -2.8276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130951310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:36 Heat of formation + Delta-G solvation = -34.655830 kcal Electronic energy + Delta-G solvation = -27563.006585 eV Core-core repulsion = 23451.854062 eV Total energy + Delta-G solvation = -4111.152523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -42.48813 -40.35367 -40.08717 -38.06275 -37.41872 -35.98234 -35.17818 -33.89453 -33.25981 -31.24516 -30.96074 -29.72648 -28.03658 -27.16875 -25.56647 -24.00924 -23.47493 -22.82310 -22.19033 -21.08965 -20.72602 -19.91427 -18.72366 -17.76621 -17.70376 -17.22364 -16.78964 -16.75303 -16.55748 -16.44320 -16.34421 -16.00624 -15.81737 -15.24329 -15.12617 -14.88437 -14.80341 -14.70472 -14.14986 -13.99581 -13.71069 -13.62960 -13.51333 -13.30271 -13.25849 -12.93050 -12.60461 -12.53627 -12.41147 -12.37590 -12.22781 -12.11459 -11.95192 -11.51195 -11.03027 -10.65102 -10.35747 -10.12535 -10.00769 -9.35926 -9.26175 -8.67905 -8.46664 -5.95064 0.00280 0.55809 1.00866 1.36940 1.42582 1.56563 1.74026 2.05740 2.09231 2.31592 2.40608 2.96245 3.05950 3.20949 3.57432 3.68482 3.69499 3.79436 3.92781 4.12706 4.15181 4.26568 4.30784 4.33483 4.48243 4.49673 4.49825 4.52584 4.60966 4.63648 4.72572 4.77906 4.78514 4.93446 4.99014 5.11759 5.39271 5.42026 5.45575 5.57064 5.69467 5.70135 5.86539 6.08761 6.14213 6.23048 6.33557 6.60871 6.64167 7.13553 7.32755 7.56968 8.12994 8.70844 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.001415 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.370353 B =19782.306643 C =20651.596005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.466 5.466 3 C 0.143 3.857 4 C -0.277 4.277 5 C 0.585 3.415 6 O -0.596 6.596 7 N -0.710 5.710 8 C 0.130 3.870 9 C 0.061 3.939 10 N -0.688 5.688 11 C 0.069 3.931 12 C 0.434 3.566 13 O -0.626 6.626 14 N -0.572 5.572 15 C -0.335 4.335 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.991 3.009 20 H -0.275 1.275 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.095 4.095 24 C -0.102 4.102 25 C -0.142 4.142 26 C -0.106 4.106 27 C -0.120 4.120 28 C 0.070 3.930 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.223 0.777 33 H 0.416 0.584 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.345 0.655 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.398 0.602 42 H 0.278 0.722 43 H 0.104 0.896 44 H 0.138 0.862 45 H 0.157 0.843 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.103 -27.926 -0.918 36.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.146 5.146 3 C 0.008 3.992 4 C -0.287 4.287 5 C 0.375 3.625 6 O -0.478 6.478 7 N -0.363 5.363 8 C 0.006 3.994 9 C -0.068 4.068 10 N -0.321 5.321 11 C -0.063 4.063 12 C 0.222 3.778 13 O -0.513 6.513 14 N -0.209 5.209 15 C -0.465 4.465 16 H 0.095 0.905 17 C -0.210 4.210 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.200 1.200 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.160 4.160 26 C -0.125 4.125 27 C -0.140 4.140 28 C -0.034 4.034 29 H 0.107 0.893 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.240 0.760 33 H 0.253 0.747 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.164 0.836 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.122 0.878 44 H 0.156 0.844 45 H 0.175 0.825 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.940 -28.370 -0.237 36.485 hybrid contribution 0.287 1.242 -0.872 1.545 sum -22.653 -27.128 -1.109 35.360 Atomic orbital electron populations 1.22474 0.73415 1.06673 1.05047 1.43934 1.08062 1.03382 1.59215 1.22665 0.88376 0.93379 0.94757 1.19942 0.92935 0.92177 1.23679 1.17582 0.87860 0.82037 0.74971 1.90758 1.26453 1.77605 1.52958 1.45436 1.10474 1.04643 1.75710 1.21020 0.88355 0.88456 1.01617 1.22060 0.92215 0.89486 1.03054 1.59885 1.18383 1.01994 1.51844 1.21525 0.93744 0.87357 1.03688 1.20974 0.91502 0.83130 0.82189 1.90509 1.28482 1.75627 1.56650 1.41911 1.09238 1.04748 1.65036 1.19699 0.88428 0.88424 1.49942 0.90526 1.25995 1.00792 0.98018 0.96241 1.69664 1.22359 1.13595 1.50341 0.84894 0.77549 0.77662 0.78364 1.20021 1.19500 1.19580 1.19112 0.93482 0.92287 1.05027 1.20715 0.98203 0.93194 0.99949 1.21254 0.98043 0.94647 1.02103 1.21206 0.91415 1.00601 0.99271 1.20407 1.01212 0.88127 1.04226 1.18481 0.89159 0.89630 1.06176 0.89348 0.86838 0.88592 0.76033 0.74691 0.92696 0.92896 0.92203 0.88562 0.83615 0.90804 0.87161 0.76809 0.91273 0.87764 0.84376 0.82526 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.02 10.99 127.77 1.40 1.43 16 2 N -0.47 -4.80 3.14 -538.61 -1.69 -6.49 16 3 C 0.14 1.58 10.76 83.70 0.90 2.48 16 4 C -0.28 -5.99 6.27 -19.02 -0.12 -6.11 16 5 C 0.59 15.64 7.80 86.52 0.67 16.32 16 6 O -0.60 -22.11 16.16 -4.27 -0.07 -22.18 16 7 N -0.71 -13.57 5.54 -466.86 -2.59 -16.16 16 8 C 0.13 3.09 5.93 86.38 0.51 3.60 16 9 C 0.06 1.24 5.80 86.30 0.50 1.74 16 10 N -0.69 -21.14 6.13 -517.92 -3.17 -24.32 16 11 C 0.07 2.24 6.17 85.56 0.53 2.76 16 12 C 0.43 20.59 7.82 87.66 0.69 21.28 16 13 O -0.63 -35.33 15.78 -3.07 -0.05 -35.38 16 14 N -0.57 -29.14 5.29 -307.00 -1.62 -30.76 16 15 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 16 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 17 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 18 N -0.92 -49.09 13.05 21.66 0.28 -48.80 16 19 Si 0.99 43.08 29.55 68.60 2.03 45.10 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 C -0.09 -2.28 6.27 -20.08 -0.13 -2.41 16 24 C -0.10 -2.57 9.85 22.40 0.22 -2.35 16 25 C -0.14 -2.60 10.03 22.28 0.22 -2.37 16 26 C -0.11 -1.41 10.01 22.28 0.22 -1.19 16 27 C -0.12 -1.52 9.91 22.37 0.22 -1.30 16 28 C 0.07 1.17 6.79 38.92 0.26 1.44 16 29 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.11 -0.47 8.13 -2.39 -0.02 -0.49 16 31 H 0.10 -0.12 8.03 -2.38 -0.02 -0.14 16 32 H 0.22 0.12 7.38 -2.91 -0.02 0.10 16 33 H 0.42 4.11 7.35 -92.71 -0.68 3.43 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.35 11.47 8.43 -89.69 -0.76 10.71 16 39 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 41 H 0.40 18.95 7.90 -92.70 -0.73 18.22 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.10 3.09 7.45 -2.91 -0.02 3.07 16 44 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 46 H 0.15 0.86 8.02 -2.91 -0.02 0.83 16 Total: -1.00 -87.09 396.80 -0.62 -87.71 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -1.13 Total: 34.38 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 7.39 Total: 16.89 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -8.79 Total: -126.53 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -0.12 Total: -57.55 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -87.09 -0.62 -87.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130951310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.057 kcal (2) G-P(sol) polarization free energy of solvation -87.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds