Wall clock time and date at job start Sat Apr 11 2020 07:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.38144 * 125.60596 * 2 1 4 4 C 1.47060 * 125.43065 * 359.73272 * 3 2 1 5 5 O 1.21650 * 119.99990 * 5.00523 * 4 3 2 6 6 N 1.34769 * 120.00378 * 184.99609 * 4 3 2 7 7 C 1.46506 * 120.00462 * 185.10517 * 6 4 3 8 8 C 1.53003 * 109.47104 * 180.02562 * 7 6 4 9 9 N 1.46900 * 109.46904 * 180.02562 * 8 7 6 10 10 C 1.46897 * 111.00043 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.46939 * 179.97438 * 10 9 8 12 12 O 1.21286 * 120.00336 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99832 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99857 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00329 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99663 * 179.97438 * 14 13 11 17 17 N 1.31412 * 120.00039 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99712 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47473 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47130 * 120.00130 * 18 16 14 21 21 H 1.48501 * 109.47132 * 240.00156 * 18 16 14 22 22 C 1.35871 * 109.14069 * 179.73514 * 3 2 1 23 23 C 1.41583 * 107.72554 * 359.97438 * 22 3 2 24 24 C 1.40102 * 133.38234 * 179.97438 * 23 22 3 25 25 C 1.36435 * 119.83118 * 179.97438 * 24 23 22 26 26 C 1.38939 * 120.62022 * 359.97438 * 25 24 23 27 27 C 1.37670 * 120.64325 * 0.02562 * 26 25 24 28 28 C 1.37477 * 125.60720 * 179.69070 * 2 1 3 29 29 H 1.09005 * 109.47142 * 84.44661 * 1 2 3 30 30 H 1.09005 * 109.47540 * 204.44012 * 1 2 3 31 31 H 1.09001 * 109.47378 * 324.44120 * 1 2 3 32 32 H 0.97003 * 119.99961 * 5.11334 * 6 4 3 33 33 H 1.08995 * 109.46636 * 300.00587 * 7 6 4 34 34 H 1.09002 * 109.46504 * 60.00935 * 7 6 4 35 35 H 1.09001 * 109.47191 * 300.00242 * 8 7 6 36 36 H 1.08993 * 109.47165 * 60.00587 * 8 7 6 37 37 H 1.00898 * 111.00221 * 56.04288 * 9 8 7 38 38 H 1.09001 * 109.46924 * 299.99492 * 10 9 8 39 39 H 1.08996 * 109.47167 * 59.99287 * 10 9 8 40 40 H 0.97000 * 119.99489 * 359.97438 * 13 11 10 41 41 H 0.96997 * 119.99594 * 179.97438 * 17 16 14 42 42 H 1.07999 * 126.13520 * 179.97438 * 22 3 2 43 43 H 1.08003 * 120.08228 * 359.97204 * 24 23 22 44 44 H 1.08001 * 119.68975 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.68069 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.09388 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1232 0.0000 4 6 1.7913 2.5139 -0.0056 5 8 0.6008 2.7484 0.0812 6 7 2.6723 3.5288 -0.1066 7 6 2.2089 4.9146 0.0001 8 6 3.3998 5.8635 -0.1490 9 7 2.9352 7.2529 -0.0414 10 6 4.0541 8.1945 -0.1806 11 6 3.5398 9.6063 -0.0657 12 8 2.3575 9.8083 0.1141 13 7 4.3938 10.6446 -0.1626 14 6 3.9259 11.9290 -0.0585 15 1 2.8730 12.1089 0.1007 16 6 4.8064 12.9993 -0.1580 17 7 6.0877 12.7804 -0.3512 18 14 4.1687 14.7494 -0.0169 19 1 2.6996 14.7252 0.1978 20 1 4.8252 15.4244 1.1314 21 1 4.4746 15.4900 -1.2672 22 6 3.5722 0.7381 0.0059 23 6 3.6033 -0.6774 0.0105 24 6 4.6425 -1.6171 0.0167 25 6 4.3520 -2.9502 0.0205 26 6 3.0331 -3.3871 0.0187 27 6 1.9946 -2.4834 0.0126 28 6 2.2654 -1.1177 0.0060 29 1 -0.3634 0.0995 -1.0229 30 1 -0.3634 -0.9356 0.4252 31 1 -0.3634 0.8360 0.5976 32 1 3.6132 3.3418 -0.2502 33 1 1.4829 5.1165 -0.7875 34 1 1.7417 5.0674 0.9730 35 1 4.1261 5.6616 0.6383 36 1 3.8667 5.7105 -1.1219 37 1 2.4416 7.4030 0.8258 38 1 4.7854 8.0086 0.6060 39 1 4.5250 8.0577 -1.1541 40 1 5.3394 10.4829 -0.3060 41 1 6.7022 13.5276 -0.4210 42 1 4.4302 1.3940 0.0070 43 1 5.6708 -1.2870 0.0185 44 1 5.1549 -3.6726 0.0249 45 1 2.8206 -4.4460 0.0214 46 1 0.9726 -2.8329 0.0109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133018087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:42 Heat of formation + Delta-G solvation = -30.711706 kcal Electronic energy + Delta-G solvation = -27594.883257 eV Core-core repulsion = 23483.901763 eV Total energy + Delta-G solvation = -4110.981493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -42.66685 -40.55269 -40.12787 -37.91955 -37.40698 -36.03066 -35.42834 -34.04568 -33.26122 -31.27153 -31.20220 -29.73457 -27.73860 -27.29631 -25.83701 -24.62859 -23.14025 -22.47393 -22.19402 -21.09438 -20.99013 -19.91659 -18.74100 -17.87485 -17.71281 -17.48538 -17.26031 -16.87934 -16.63110 -16.47549 -16.02207 -15.92791 -15.64657 -15.23861 -15.10020 -14.88918 -14.83605 -14.55084 -14.31949 -14.00866 -13.97445 -13.88141 -13.52639 -13.31583 -13.30861 -12.94044 -12.60334 -12.57937 -12.43837 -12.39378 -12.21484 -12.11377 -11.81911 -11.51140 -11.27241 -10.77918 -10.36014 -10.29187 -10.00851 -9.37280 -9.20666 -8.68594 -8.46686 -5.95080 -0.25137 0.67757 1.06022 1.36956 1.40298 1.42849 1.56602 2.05868 2.14084 2.21013 2.31206 2.96294 3.00862 3.20990 3.46443 3.61883 3.67088 3.82542 3.88581 4.11115 4.12369 4.27842 4.31731 4.33030 4.41694 4.46855 4.48417 4.51717 4.59652 4.63129 4.65166 4.79980 4.87058 4.89216 4.93733 5.12032 5.22210 5.41850 5.52381 5.63014 5.69962 5.73769 5.84819 6.06833 6.07557 6.23546 6.33498 6.38473 6.60768 7.00913 7.13431 7.56959 8.12660 8.70824 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.001401 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.398962 B =19982.419833 C =20843.432408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.462 5.462 3 C -0.005 4.005 4 C 0.581 3.419 5 O -0.576 6.576 6 N -0.696 5.696 7 C 0.131 3.869 8 C 0.058 3.942 9 N -0.686 5.686 10 C 0.068 3.932 11 C 0.435 3.565 12 O -0.626 6.626 13 N -0.572 5.572 14 C -0.335 4.335 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.919 5.919 18 Si 0.991 3.009 19 H -0.275 1.275 20 H -0.270 1.270 21 H -0.271 1.271 22 C -0.128 4.128 23 C -0.142 4.142 24 C -0.068 4.068 25 C -0.154 4.154 26 C -0.086 4.086 27 C -0.146 4.146 28 C 0.089 3.911 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.420 0.580 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.346 0.654 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.398 0.602 41 H 0.278 0.722 42 H 0.181 0.819 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -34.746 0.625 34.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.143 5.143 3 C -0.115 4.115 4 C 0.368 3.632 5 O -0.457 6.457 6 N -0.349 5.349 7 C 0.007 3.993 8 C -0.071 4.071 9 N -0.319 5.319 10 C -0.064 4.064 11 C 0.222 3.778 12 O -0.512 6.512 13 N -0.210 5.210 14 C -0.465 4.465 15 H 0.095 0.905 16 C -0.211 4.211 17 N -0.560 5.560 18 Si 0.815 3.185 19 H -0.199 1.199 20 H -0.196 1.196 21 H -0.196 1.196 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.087 4.087 25 C -0.173 4.173 26 C -0.106 4.106 27 C -0.166 4.166 28 C -0.020 4.020 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.258 0.742 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.165 0.835 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.198 0.802 43 H 0.163 0.837 44 H 0.166 0.834 45 H 0.170 0.830 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.753 -34.170 0.134 34.179 hybrid contribution 0.634 0.983 0.725 1.376 sum -0.119 -33.187 0.860 33.199 Atomic orbital electron populations 1.22162 0.75451 1.05060 1.03829 1.43999 1.06767 1.03365 1.60164 1.19789 0.91091 0.87087 1.13516 1.17320 0.85456 0.84135 0.76278 1.90797 1.17260 1.85640 1.51997 1.45348 1.11908 1.04979 1.72666 1.21126 0.97182 0.78936 1.02099 1.22071 0.95383 0.86208 1.03469 1.59875 1.25708 1.02519 1.43807 1.21523 0.92794 0.88094 1.03968 1.20957 0.86472 0.87981 0.82341 1.90503 1.18401 1.86488 1.55820 1.41921 1.10127 1.05105 1.63810 1.19701 0.94972 0.83101 1.48683 0.90462 1.26002 0.95178 1.03639 0.96263 1.69668 1.02815 1.34091 1.49400 0.84891 0.78144 0.77099 0.78329 1.19944 1.19554 1.19619 1.21316 0.94885 0.94461 1.04831 1.18486 0.92966 0.93968 1.09229 1.20729 0.98474 0.92310 0.97173 1.21034 0.97371 0.95818 1.03054 1.21283 0.91979 1.00188 0.97121 1.20360 1.01087 0.88478 1.06716 1.18792 0.90299 0.88971 1.03973 0.90942 0.87906 0.89878 0.74215 0.91910 0.91935 0.92134 0.88690 0.83490 0.90795 0.87253 0.76833 0.91287 0.80192 0.83700 0.83396 0.82988 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.42 127.77 1.33 2.62 16 2 N -0.46 -9.40 3.22 -526.28 -1.70 -11.09 16 3 C -0.01 -0.11 6.81 39.91 0.27 0.16 16 4 C 0.58 13.38 7.78 86.56 0.67 14.05 16 5 O -0.58 -17.45 14.67 -4.19 -0.06 -17.51 16 6 N -0.70 -12.03 5.52 -466.72 -2.58 -14.60 16 7 C 0.13 2.74 5.94 86.38 0.51 3.25 16 8 C 0.06 1.10 5.80 86.30 0.50 1.60 16 9 N -0.69 -20.12 6.12 -517.95 -3.17 -23.29 16 10 C 0.07 2.17 6.17 85.56 0.53 2.70 16 11 C 0.43 20.30 7.82 87.66 0.69 20.99 16 12 O -0.63 -34.67 15.78 -3.05 -0.05 -34.72 16 13 N -0.57 -28.90 5.29 -306.98 -1.62 -30.52 16 14 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 15 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 16 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 17 N -0.92 -48.97 13.05 21.67 0.28 -48.69 16 18 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 C -0.13 -2.03 10.28 22.55 0.23 -1.79 16 23 C -0.14 -2.44 6.16 -21.36 -0.13 -2.57 16 24 C -0.07 -0.86 10.06 22.30 0.22 -0.63 16 25 C -0.15 -1.58 9.96 22.02 0.22 -1.36 16 26 C -0.09 -0.91 10.01 22.30 0.22 -0.68 16 27 C -0.15 -2.04 9.89 22.37 0.22 -1.82 16 28 C 0.09 1.65 6.81 39.14 0.27 1.92 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.10 1.17 7.85 -2.38 -0.02 1.15 16 31 H 0.08 1.72 6.48 -2.39 -0.02 1.71 16 32 H 0.42 4.32 7.30 -92.71 -0.68 3.65 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.35 10.87 8.43 -89.70 -0.76 10.12 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 41 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.18 1.52 7.36 -2.91 -0.02 1.50 16 43 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 45 H 0.15 0.73 8.06 -2.91 -0.02 0.70 16 46 H 0.13 1.36 7.90 -2.91 -0.02 1.34 16 Total: -1.00 -77.40 393.48 -0.95 -78.35 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -1.12 Total: 37.08 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 7.04 Total: 20.16 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -8.79 Total: -128.20 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.11 Total: -52.23 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -77.40 -0.95 -78.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133018087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.641 kcal (2) G-P(sol) polarization free energy of solvation -77.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds