Wall clock time and date at job start Sat Apr 11 2020 07:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.45193 * 109.47169 * 2 1 4 4 C 1.34730 * 116.99881 * 179.97438 * 3 2 1 5 5 O 1.21487 * 120.00028 * 359.97438 * 4 3 2 6 6 C 1.47581 * 119.99969 * 180.02562 * 4 3 2 7 7 N 1.31847 * 126.52685 * 359.97438 * 6 4 3 8 8 N 1.28470 * 110.06985 * 180.02562 * 7 6 4 9 9 H 0.96993 * 124.88532 * 180.02562 * 8 7 6 10 10 C 1.35048 * 110.23503 * 359.73639 * 8 7 6 11 11 C 1.35345 * 107.24164 * 0.43033 * 10 8 7 12 12 C 1.50705 * 127.24969 * 179.84960 * 11 10 8 13 13 N 1.46894 * 109.47154 * 259.68760 * 12 11 10 14 14 C 1.46903 * 111.00436 * 71.72829 * 13 12 11 15 15 C 1.50699 * 109.46663 * 63.49654 * 14 13 12 16 16 H 1.08001 * 120.00598 * 355.95372 * 15 14 13 17 17 C 1.37886 * 119.99883 * 175.94694 * 15 14 13 18 18 N 1.31504 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99953 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47309 * 89.99743 * 19 17 15 21 21 H 1.48501 * 109.46880 * 209.99909 * 19 17 15 22 22 H 1.48502 * 109.47096 * 329.99587 * 19 17 15 23 23 C 1.46903 * 110.99961 * 195.68337 * 13 12 11 24 24 C 1.50706 * 109.46921 * 169.99879 * 23 13 12 25 25 C 1.38672 * 120.41556 * 90.00254 * 24 23 13 26 26 C 1.38634 * 118.41524 * 179.97438 * 25 24 23 27 27 C 1.38223 * 119.16257 * 0.24931 * 26 25 24 28 28 N 1.31853 * 120.76521 * 359.50128 * 27 26 25 29 29 C 1.31881 * 121.72352 * 0.48979 * 28 27 26 30 30 H 1.08995 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46529 * 299.99899 * 1 2 3 32 32 H 1.08996 * 109.46405 * 59.99845 * 1 2 3 33 33 H 1.08995 * 109.46914 * 239.99726 * 2 1 3 34 34 H 1.09005 * 109.46648 * 120.00271 * 2 1 3 35 35 H 1.08000 * 126.38073 * 180.30372 * 10 8 7 36 36 H 1.08999 * 109.46896 * 139.68508 * 12 11 10 37 37 H 1.08998 * 109.46778 * 19.68552 * 12 11 10 38 38 H 1.08989 * 109.47439 * 183.49707 * 14 13 12 39 39 H 1.09003 * 109.46975 * 303.50240 * 14 13 12 40 40 H 0.97008 * 120.00117 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.46855 * 50.00297 * 23 13 12 42 42 H 1.08994 * 109.47286 * 289.99816 * 23 13 12 43 43 H 1.08000 * 120.79211 * 359.95373 * 25 24 23 44 44 H 1.08005 * 120.41663 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.61487 * 179.74498 * 27 26 25 46 46 H 1.08006 * 119.62163 * 179.74877 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3498 1.5454 0.0005 5 8 4.0898 0.5819 0.0015 6 6 3.9139 2.9091 0.0011 7 7 3.2348 4.0393 0.0008 8 7 4.0421 5.0387 0.0010 9 1 3.7717 5.9701 0.0011 10 6 5.3213 4.6058 0.0073 11 6 5.2870 3.2528 0.0016 12 6 6.4632 2.3105 0.0020 13 7 6.6954 1.8166 -1.3617 14 6 7.2487 2.8744 -2.2178 15 6 8.5997 3.2889 -1.6942 16 1 8.9780 2.8614 -0.7774 17 6 9.3529 4.2140 -2.3857 18 7 8.8921 4.7349 -3.5018 19 14 11.0277 4.7273 -1.7371 20 1 12.0710 3.8297 -2.2950 21 1 11.3090 6.1270 -2.1455 22 1 11.0347 4.6332 -0.2551 23 6 7.5695 0.6359 -1.3523 24 6 7.5879 0.0136 -2.7248 25 6 8.5283 0.4111 -3.6633 26 6 8.5079 -0.1892 -4.9127 27 6 7.5545 -1.1533 -5.1813 28 7 6.6784 -1.5098 -4.2627 29 6 6.6685 -0.9606 -3.0637 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 6.2068 5.2241 0.0136 36 1 6.2542 1.4690 0.6626 37 1 7.3503 2.8370 0.3537 38 1 7.3529 2.5003 -3.2362 39 1 6.5780 3.7336 -2.2131 40 1 9.4218 5.3860 -3.9882 41 1 7.1936 -0.0886 -0.6299 42 1 8.5804 0.9345 -1.0752 43 1 9.2589 1.1704 -3.4266 44 1 9.2251 0.0961 -5.6682 45 1 7.5293 -1.6227 -6.1537 46 1 5.9328 -1.2756 -2.3383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138850951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:56 Heat of formation + Delta-G solvation = 33.204341 kcal Electronic energy + Delta-G solvation = -30633.756490 eV Core-core repulsion = 26525.546604 eV Total energy + Delta-G solvation = -4108.209886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38128 -39.80043 -39.58007 -36.89394 -36.19060 -32.67637 -32.58239 -31.95196 -31.38326 -30.93462 -30.22326 -27.24643 -26.08696 -24.89331 -24.13288 -22.86306 -22.64615 -22.06980 -20.65202 -20.16089 -19.47842 -17.73557 -17.22176 -16.57476 -16.40727 -16.29582 -16.05357 -15.69230 -15.33313 -14.92480 -14.50755 -14.37088 -13.82619 -13.77075 -13.40318 -13.31300 -13.07620 -12.96343 -12.60334 -12.42957 -12.35108 -12.23527 -11.85942 -11.63269 -11.54903 -11.14931 -10.98252 -10.93155 -10.59071 -10.54838 -10.37209 -10.33925 -10.15737 -10.07072 -9.72508 -9.17090 -9.07319 -8.88149 -8.58934 -8.49675 -8.34719 -7.11778 -6.09243 -4.19789 1.65559 1.71692 1.94547 2.44824 2.69782 3.18403 3.27297 3.29012 3.29403 3.52105 4.31348 4.39542 4.69151 4.94147 4.98604 4.99353 5.17426 5.19205 5.28249 5.33447 5.37890 5.41782 5.65020 5.66354 5.71611 5.75613 5.78362 5.81424 5.92504 5.98171 6.04396 6.26679 6.32923 6.43060 6.51285 6.60002 6.69874 6.75641 6.82451 7.07248 7.20800 7.25162 7.35074 7.50495 7.85911 7.94329 8.05889 8.24671 8.25272 8.29338 8.52566 8.93278 9.46697 10.93700 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.004609 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.549864 B = 6073.910752 C = 8672.114506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.351 6.351 4 C 0.556 3.444 5 O -0.480 6.480 6 C 0.007 3.993 7 N -0.249 5.249 8 N -0.381 5.381 9 H 0.445 0.555 10 C 0.000 4.000 11 C -0.110 4.110 12 C 0.132 3.868 13 N -0.524 5.524 14 C 0.184 3.816 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.880 3.120 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.105 3.895 24 C -0.105 4.105 25 C -0.048 4.048 26 C -0.180 4.180 27 C 0.080 3.920 28 N -0.498 5.498 29 C 0.106 3.894 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.189 0.811 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 -4.334 6.102 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.268 6.268 4 C 0.397 3.603 5 O -0.364 6.364 6 C -0.151 4.151 7 N -0.087 5.087 8 N -0.096 5.096 9 H 0.289 0.711 10 C -0.145 4.145 11 C -0.119 4.119 12 C 0.003 3.997 13 N -0.248 5.248 14 C 0.058 3.942 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.708 3.292 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.024 4.024 24 C -0.108 4.108 25 C -0.075 4.075 26 C -0.200 4.200 27 C -0.077 4.077 28 N -0.207 5.207 29 C -0.050 4.050 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.206 0.794 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.162 0.838 44 H 0.143 0.857 45 H 0.161 0.839 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.963 -4.984 5.561 13.265 hybrid contribution 3.147 1.693 0.513 3.610 sum -7.817 -3.291 6.074 10.432 Atomic orbital electron populations 1.21786 0.92949 1.02633 1.03433 1.22985 0.95072 0.80441 1.02640 1.86620 1.23937 1.31764 1.84494 1.19499 0.80241 0.87455 0.73077 1.90854 1.60188 1.40647 1.44687 1.20578 0.91794 0.89816 1.12926 1.73582 1.22042 0.94616 1.18418 1.43245 1.04362 1.08757 1.53227 0.71083 1.22896 0.88787 0.95854 1.06919 1.20210 0.93365 0.93149 1.05223 1.20225 0.92499 0.95217 0.91777 1.62412 1.46156 1.07099 1.09096 1.19817 0.92586 0.88866 0.92946 1.21726 1.03544 1.24359 1.08978 0.92434 1.24912 0.97570 0.96145 0.94776 1.69956 1.37673 1.29178 1.15621 0.86786 0.85073 0.77991 0.79322 1.20673 1.21307 1.19929 1.20777 0.97182 0.92646 0.91775 1.20814 0.95587 0.96670 0.97687 1.21806 0.97471 0.96037 0.92166 1.22076 1.00987 0.98865 0.98102 1.22534 0.91735 0.95419 0.98024 1.67615 1.23558 1.27358 1.02177 1.22575 0.96274 0.93146 0.93046 0.90440 0.91666 0.91508 0.91052 0.91353 0.79379 0.90955 0.92626 0.94644 0.95480 0.92873 0.91536 0.92830 0.83811 0.85653 0.83861 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.74 6.20 37.16 0.23 0.97 16 3 O -0.35 -5.45 10.23 -40.57 -0.42 -5.87 16 4 C 0.56 9.76 7.97 34.54 0.28 10.04 16 5 O -0.48 -8.96 15.18 -19.26 -0.29 -9.26 16 6 C 0.01 0.13 7.17 -82.79 -0.59 -0.46 16 7 N -0.25 -4.00 12.24 33.41 0.41 -3.60 16 8 N -0.38 -5.07 6.83 30.47 0.21 -4.86 16 9 H 0.45 3.98 8.96 -190.45 -1.71 2.27 16 10 C 0.00 -0.01 11.36 -17.17 -0.19 -0.20 16 11 C -0.11 -1.95 5.05 -104.39 -0.53 -2.47 16 12 C 0.13 2.46 4.61 -4.98 -0.02 2.43 16 13 N -0.52 -10.77 4.65 -238.97 -1.11 -11.88 16 14 C 0.18 4.35 4.60 -4.97 -0.02 4.33 16 15 C -0.55 -13.26 6.96 -34.44 -0.24 -13.50 16 16 H 0.06 1.39 5.95 -52.49 -0.31 1.07 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -23.97 13.28 55.43 0.74 -23.23 16 19 Si 0.88 19.65 29.54 -169.99 -5.02 14.62 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 C 0.10 1.99 4.93 -4.97 -0.02 1.96 16 24 C -0.11 -2.01 4.89 -104.48 -0.51 -2.52 16 25 C -0.05 -0.93 8.14 -39.27 -0.32 -1.25 16 26 C -0.18 -3.08 10.11 -39.44 -0.40 -3.48 16 27 C 0.08 1.33 11.18 -17.55 -0.20 1.13 16 28 N -0.50 -9.17 10.36 -13.25 -0.14 -9.31 16 29 C 0.11 1.97 10.86 -17.55 -0.19 1.78 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.19 2.65 8.06 -52.49 -0.42 2.23 16 36 H 0.07 1.30 6.93 -51.93 -0.36 0.94 16 37 H 0.06 1.07 6.35 -51.93 -0.33 0.74 16 38 H 0.04 0.94 6.15 -51.94 -0.32 0.62 16 39 H 0.03 0.70 6.91 -51.93 -0.36 0.34 16 40 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.07 1.16 7.82 -51.93 -0.41 0.76 16 42 H 0.05 1.06 6.36 -51.93 -0.33 0.73 16 43 H 0.14 3.01 7.68 -52.49 -0.40 2.61 16 44 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 45 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 46 H 0.15 2.58 8.06 -52.48 -0.42 2.16 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -30.97 387.74 -9.70 -40.66 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.47 Total: 7.40 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.45 Total: -0.53 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.10 Total: -52.88 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.71 Total: -15.12 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.97 -9.70 -40.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138850951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.868 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds