Wall clock time and date at job start Sat Apr 11 2020 07:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.45193 * 109.47169 * 2 1 4 4 C 1.34730 * 116.99881 * 179.97438 * 3 2 1 5 5 O 1.21487 * 120.00028 * 359.97438 * 4 3 2 6 6 C 1.47581 * 119.99969 * 180.02562 * 4 3 2 7 7 N 1.31847 * 126.52685 * 359.97438 * 6 4 3 8 8 N 1.28470 * 110.06985 * 180.02562 * 7 6 4 9 9 H 0.96993 * 124.88532 * 180.02562 * 8 7 6 10 10 C 1.35048 * 110.23503 * 359.73639 * 8 7 6 11 11 C 1.35345 * 107.24164 * 0.43033 * 10 8 7 12 12 C 1.50705 * 127.24969 * 179.84960 * 11 10 8 13 13 N 1.46894 * 109.47154 * 259.68760 * 12 11 10 14 14 C 1.46903 * 111.00436 * 71.72829 * 13 12 11 15 15 C 1.50699 * 109.46663 * 63.49654 * 14 13 12 16 16 H 1.08001 * 120.00598 * 355.95372 * 15 14 13 17 17 C 1.37886 * 119.99883 * 175.94694 * 15 14 13 18 18 N 1.31504 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99953 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47309 * 89.99743 * 19 17 15 21 21 H 1.48501 * 109.46880 * 209.99909 * 19 17 15 22 22 H 1.48502 * 109.47096 * 329.99587 * 19 17 15 23 23 C 1.46903 * 110.99961 * 195.68337 * 13 12 11 24 24 C 1.50706 * 109.46921 * 169.99879 * 23 13 12 25 25 C 1.38672 * 120.41556 * 90.00254 * 24 23 13 26 26 C 1.38634 * 118.41524 * 179.97438 * 25 24 23 27 27 C 1.38223 * 119.16257 * 0.24931 * 26 25 24 28 28 N 1.31853 * 120.76521 * 359.50128 * 27 26 25 29 29 C 1.31881 * 121.72352 * 0.48979 * 28 27 26 30 30 H 1.08995 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46529 * 299.99899 * 1 2 3 32 32 H 1.08996 * 109.46405 * 59.99845 * 1 2 3 33 33 H 1.08995 * 109.46914 * 239.99726 * 2 1 3 34 34 H 1.09005 * 109.46648 * 120.00271 * 2 1 3 35 35 H 1.08000 * 126.38073 * 180.30372 * 10 8 7 36 36 H 1.08999 * 109.46896 * 139.68508 * 12 11 10 37 37 H 1.08998 * 109.46778 * 19.68552 * 12 11 10 38 38 H 1.08989 * 109.47439 * 183.49707 * 14 13 12 39 39 H 1.09003 * 109.46975 * 303.50240 * 14 13 12 40 40 H 0.97008 * 120.00117 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.46855 * 50.00297 * 23 13 12 42 42 H 1.08994 * 109.47286 * 289.99816 * 23 13 12 43 43 H 1.08000 * 120.79211 * 359.95373 * 25 24 23 44 44 H 1.08005 * 120.41663 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.61487 * 179.74498 * 27 26 25 46 46 H 1.08006 * 119.62163 * 179.74877 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3498 1.5454 0.0005 5 8 4.0898 0.5819 0.0015 6 6 3.9139 2.9091 0.0011 7 7 3.2348 4.0393 0.0008 8 7 4.0421 5.0387 0.0010 9 1 3.7717 5.9701 0.0011 10 6 5.3213 4.6058 0.0073 11 6 5.2870 3.2528 0.0016 12 6 6.4632 2.3105 0.0020 13 7 6.6954 1.8166 -1.3617 14 6 7.2487 2.8744 -2.2178 15 6 8.5997 3.2889 -1.6942 16 1 8.9780 2.8614 -0.7774 17 6 9.3529 4.2140 -2.3857 18 7 8.8921 4.7349 -3.5018 19 14 11.0277 4.7273 -1.7371 20 1 12.0710 3.8297 -2.2950 21 1 11.3090 6.1270 -2.1455 22 1 11.0347 4.6332 -0.2551 23 6 7.5695 0.6359 -1.3523 24 6 7.5879 0.0136 -2.7248 25 6 8.5283 0.4111 -3.6633 26 6 8.5079 -0.1892 -4.9127 27 6 7.5545 -1.1533 -5.1813 28 7 6.6784 -1.5098 -4.2627 29 6 6.6685 -0.9606 -3.0637 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 6.2068 5.2241 0.0136 36 1 6.2542 1.4690 0.6626 37 1 7.3503 2.8370 0.3537 38 1 7.3529 2.5003 -3.2362 39 1 6.5780 3.7336 -2.2131 40 1 9.4218 5.3860 -3.9882 41 1 7.1936 -0.0886 -0.6299 42 1 8.5804 0.9345 -1.0752 43 1 9.2589 1.1704 -3.4266 44 1 9.2251 0.0961 -5.6682 45 1 7.5293 -1.6227 -6.1537 46 1 5.9328 -1.2756 -2.3383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138850951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:55 Heat of formation + Delta-G solvation = 13.649099 kcal Electronic energy + Delta-G solvation = -30634.604469 eV Core-core repulsion = 26525.546604 eV Total energy + Delta-G solvation = -4109.057865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.64020 -41.05903 -41.01248 -38.48857 -37.46497 -34.57238 -33.99831 -33.08947 -32.70205 -32.12482 -31.60298 -29.07633 -27.51657 -26.13454 -25.86486 -24.30655 -23.62376 -23.60131 -21.95581 -21.62818 -20.90828 -19.06250 -18.50341 -18.31170 -17.78354 -17.59405 -17.27196 -17.16693 -16.69210 -16.58911 -15.98599 -15.91406 -15.42962 -14.84065 -14.80788 -14.59437 -14.45532 -14.18310 -14.13105 -13.89995 -13.67550 -13.50747 -13.17638 -12.90175 -12.83830 -12.75044 -12.51616 -12.43889 -12.23049 -12.10084 -11.90763 -11.82386 -11.63630 -11.47871 -11.43195 -10.58780 -10.46998 -10.40596 -10.31843 -9.94767 -9.74589 -8.83295 -8.02652 -6.21235 0.29680 0.36236 0.48234 1.15723 1.40741 1.45363 1.52023 1.55132 2.16113 2.22522 2.43786 2.96824 3.21624 3.42846 3.65552 3.75314 3.98511 4.04488 4.08456 4.12736 4.17438 4.19650 4.25895 4.30705 4.42098 4.48365 4.59351 4.65410 4.81199 4.87337 4.89195 4.97404 4.97863 5.06364 5.14980 5.22084 5.30061 5.35991 5.40994 5.48162 5.51292 5.61302 5.87558 5.91890 6.12064 6.18422 6.40226 6.62028 6.71501 6.97623 7.00569 7.11639 7.49176 8.97501 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.004609 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.549864 B = 6073.910752 C = 8672.114506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.553 3.447 5 O -0.500 6.500 6 C -0.013 4.013 7 N -0.249 5.249 8 N -0.357 5.357 9 H 0.465 0.535 10 C 0.009 3.991 11 C -0.138 4.138 12 C 0.139 3.861 13 N -0.528 5.528 14 C 0.207 3.793 15 C -0.537 4.537 16 H 0.059 0.941 17 C 0.027 3.973 18 N -0.921 5.921 19 Si 0.940 3.060 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.266 1.266 23 C 0.110 3.890 24 C -0.118 4.118 25 C -0.065 4.065 26 C -0.179 4.179 27 C 0.084 3.916 28 N -0.510 5.510 29 C 0.102 3.898 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.202 0.798 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.004 0.996 39 H 0.003 0.997 40 H 0.260 0.740 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.182 0.818 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 -4.588 6.346 12.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.395 3.605 5 O -0.386 6.386 6 C -0.171 4.171 7 N -0.088 5.088 8 N -0.075 5.075 9 H 0.314 0.686 10 C -0.136 4.136 11 C -0.148 4.148 12 C 0.011 3.989 13 N -0.251 5.251 14 C 0.081 3.919 15 C -0.577 4.577 16 H 0.077 0.923 17 C -0.172 4.172 18 N -0.561 5.561 19 Si 0.767 3.233 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.018 4.018 24 C -0.120 4.120 25 C -0.092 4.092 26 C -0.199 4.199 27 C -0.073 4.073 28 N -0.219 5.219 29 C -0.055 4.055 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.219 0.781 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.023 0.977 39 H 0.021 0.979 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.139 0.861 44 H 0.167 0.833 45 H 0.199 0.801 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.386 -5.228 5.831 13.819 hybrid contribution 3.199 1.746 0.407 3.667 sum -8.186 -3.482 6.239 10.866 Atomic orbital electron populations 1.21811 0.90341 1.04394 1.03511 1.23335 0.97079 0.78834 1.02741 1.86615 1.22754 1.33946 1.83994 1.19590 0.80830 0.87318 0.72713 1.90823 1.60744 1.41172 1.45834 1.20696 0.91926 0.90435 1.14039 1.73539 1.22269 0.94728 1.18313 1.43303 1.03494 1.09436 1.51246 0.68631 1.23028 0.89753 0.95277 1.05551 1.20254 0.93259 0.94092 1.07179 1.20135 0.92715 0.95562 0.90515 1.62343 1.46111 1.06627 1.10000 1.19366 0.91955 0.88591 0.92004 1.21837 1.03607 1.23606 1.08610 0.92269 1.25531 1.00552 0.96296 0.94869 1.70075 1.39023 1.30030 1.16927 0.85840 0.81197 0.77220 0.79088 1.20784 1.21490 1.19018 1.20754 0.96274 0.92330 0.92473 1.20825 0.96152 0.97288 0.97726 1.21729 0.97536 0.96298 0.93604 1.22349 1.01501 0.98427 0.97583 1.23132 0.90465 0.94689 0.98997 1.67673 1.24218 1.27652 1.02340 1.22662 0.96239 0.93027 0.93537 0.87798 0.91188 0.91781 0.91597 0.90676 0.78126 0.90528 0.93337 0.97749 0.97882 0.93042 0.90051 0.93981 0.86137 0.83285 0.80067 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.29 71.99 0.74 -1.54 16 2 C 0.05 1.23 6.20 71.99 0.45 1.68 16 3 O -0.36 -10.97 10.23 -56.41 -0.58 -11.55 16 4 C 0.55 19.54 7.97 70.29 0.56 20.10 16 5 O -0.50 -18.87 15.18 19.88 0.30 -18.57 16 6 C -0.01 -0.48 7.17 42.42 0.30 -0.17 16 7 N -0.25 -7.83 12.24 -48.22 -0.59 -8.42 16 8 N -0.36 -9.03 6.83 -57.51 -0.39 -9.43 16 9 H 0.47 7.41 8.96 -220.00 -1.97 5.43 16 10 C 0.01 0.27 11.36 83.53 0.95 1.22 16 11 C -0.14 -4.90 5.05 -19.71 -0.10 -5.00 16 12 C 0.14 5.26 4.61 85.56 0.39 5.65 16 13 N -0.53 -22.11 4.65 -909.95 -4.23 -26.34 16 14 C 0.21 10.08 4.60 85.56 0.39 10.47 16 15 C -0.54 -26.36 6.96 25.60 0.18 -26.18 16 16 H 0.06 2.86 5.95 -2.91 -0.02 2.84 16 17 C 0.03 1.39 5.46 84.66 0.46 1.85 16 18 N -0.92 -50.46 13.28 21.45 0.28 -50.17 16 19 Si 0.94 40.31 29.54 68.60 2.03 42.33 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 23 C 0.11 4.25 4.93 85.56 0.42 4.68 16 24 C -0.12 -4.55 4.89 -19.77 -0.10 -4.65 16 25 C -0.07 -2.55 8.14 22.47 0.18 -2.36 16 26 C -0.18 -5.94 10.11 22.36 0.23 -5.71 16 27 C 0.08 2.63 11.18 84.69 0.95 3.58 16 28 N -0.51 -18.17 10.36 -195.84 -2.03 -20.20 16 29 C 0.10 3.75 10.86 84.67 0.92 4.67 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.20 5.45 8.06 -2.91 -0.02 5.43 16 36 H 0.08 2.79 6.93 -2.39 -0.02 2.78 16 37 H 0.05 1.88 6.35 -2.39 -0.02 1.86 16 38 H 0.00 0.24 6.15 -2.39 -0.01 0.23 16 39 H 0.00 0.16 6.91 -2.39 -0.02 0.15 16 40 H 0.26 13.71 8.31 -92.70 -0.77 12.94 16 41 H 0.08 2.87 7.82 -2.39 -0.02 2.85 16 42 H 0.04 1.71 6.36 -2.39 -0.02 1.69 16 43 H 0.12 5.25 7.68 -2.91 -0.02 5.23 16 44 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 45 H 0.18 4.20 8.06 -2.91 -0.02 4.17 16 46 H 0.16 5.38 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -66.76 387.74 0.77 -65.99 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.95 Total: 28.07 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.93 Total: 8.29 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -6.96 Total: -114.56 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.28 Total: -30.12 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Total: -66.76 0.77 -65.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138850951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.634 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds