Wall clock time and date at job start Sat Apr 11 2020 07:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47421 * 2 1 4 4 C 1.34233 * 117.00422 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99432 * 359.97438 * 4 3 2 6 6 C 1.50692 * 120.00115 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.47078 * 174.23391 * 6 4 3 8 8 C 1.46904 * 110.99808 * 287.88194 * 7 6 4 9 9 C 1.50696 * 109.47220 * 295.57171 * 8 7 6 10 10 H 1.07998 * 120.00155 * 5.24395 * 9 8 7 11 11 C 1.37885 * 119.99509 * 185.24910 * 9 8 7 12 12 N 1.31510 * 120.00467 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99602 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46963 * 90.00200 * 13 11 9 15 15 H 1.48498 * 109.47110 * 209.99858 * 13 11 9 16 16 H 1.48503 * 109.47430 * 330.00099 * 13 11 9 17 17 C 1.46906 * 111.00007 * 163.93359 * 7 6 4 18 18 C 1.50698 * 109.46807 * 189.99910 * 17 7 6 19 19 C 1.38282 * 119.93268 * 269.72502 * 18 17 7 20 20 C 1.38121 * 120.06186 * 179.72892 * 19 18 17 21 21 C 1.38835 * 119.93844 * 0.56503 * 20 19 18 22 22 N 1.40193 * 120.06986 * 179.72495 * 21 20 19 23 23 C 1.34729 * 126.83927 * 359.69421 * 22 21 20 24 24 N 1.30848 * 108.02754 * 179.89001 * 23 22 21 25 25 C 1.33260 * 109.84644 * 0.37935 * 24 23 22 26 26 N 1.30749 * 108.99726 * 359.76065 * 25 24 23 27 27 C 1.38838 * 119.86153 * 359.71130 * 21 20 19 28 28 C 1.38115 * 119.93598 * 359.97438 * 27 21 20 29 29 H 1.09001 * 109.47017 * 60.00106 * 1 2 3 30 30 H 1.08993 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46826 * 300.00495 * 1 2 3 32 32 H 1.09004 * 109.47282 * 239.99781 * 2 1 3 33 33 H 1.09001 * 109.47017 * 119.99894 * 2 1 3 34 34 H 1.09008 * 109.47527 * 54.23518 * 6 4 3 35 35 H 1.08998 * 109.47469 * 294.22914 * 6 4 3 36 36 H 1.09003 * 109.46751 * 55.57257 * 8 7 6 37 37 H 1.09001 * 109.47017 * 175.56562 * 8 7 6 38 38 H 0.96997 * 120.00187 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.46780 * 309.99567 * 17 7 6 40 40 H 1.08998 * 109.47252 * 69.99831 * 17 7 6 41 41 H 1.07999 * 119.96333 * 0.02562 * 19 18 17 42 42 H 1.08005 * 120.03155 * 180.29346 * 20 19 18 43 43 H 1.07999 * 125.98422 * 0.03939 * 23 22 21 44 44 H 1.07995 * 125.49981 * 179.74517 * 25 24 23 45 45 H 1.07997 * 120.02790 * 179.97438 * 27 21 20 46 46 H 1.08004 * 119.96562 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3814 2.8631 0.1375 8 6 5.7614 2.4668 1.5001 9 6 5.3284 3.5334 2.4726 10 1 4.7478 4.3759 2.1270 11 6 5.6737 3.4336 3.8038 12 7 6.3803 2.4075 4.2248 13 14 5.1376 4.7560 5.0093 14 1 3.8151 4.3973 5.5818 15 1 6.1372 4.8642 6.1022 16 1 5.0343 6.0579 4.3024 17 6 6.0109 4.1371 -0.2350 18 6 7.5044 3.9539 -0.3183 19 6 8.2889 4.1648 0.8007 20 6 9.6574 3.9922 0.7289 21 6 10.2465 3.6180 -0.4713 22 7 11.6359 3.4476 -0.5488 23 6 12.5271 3.6150 0.4476 24 7 13.7189 3.3583 -0.0276 25 6 13.6314 3.0337 -1.3171 26 7 12.3766 3.0743 -1.6821 27 6 9.4567 3.4125 -1.5945 28 6 8.0881 3.5803 -1.5149 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5049 3.5030 0.8327 35 1 3.6696 3.4340 -0.9383 36 1 5.2748 1.5249 1.7534 37 1 6.8430 2.3431 1.5541 38 1 6.6235 2.3375 5.1612 39 1 5.6300 4.4610 -1.2036 40 1 5.7787 4.8909 0.5173 41 1 7.8305 4.4602 1.7330 42 1 10.2692 4.1525 1.6044 43 1 12.2977 3.9073 1.4617 44 1 14.4629 2.7787 -1.9574 45 1 9.9122 3.1217 -2.5296 46 1 7.4733 3.4202 -2.3883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139333044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:58 Heat of formation + Delta-G solvation = 29.156399 kcal Electronic energy + Delta-G solvation = -29554.287524 eV Core-core repulsion = 25445.902107 eV Total energy + Delta-G solvation = -4108.385418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.31863 -41.41761 -40.45405 -38.45481 -37.23072 -35.21367 -34.47227 -32.68935 -32.65291 -31.80425 -31.35748 -29.64869 -28.18665 -26.23246 -24.79640 -24.31083 -24.03232 -22.83650 -22.12577 -21.77946 -21.21767 -19.37212 -18.91726 -18.35058 -17.67981 -17.19190 -16.87350 -16.73663 -16.57255 -16.31304 -16.10884 -16.04243 -15.50519 -15.10184 -14.92748 -14.78474 -14.48430 -14.36527 -14.08947 -13.84272 -13.55819 -13.36779 -13.22307 -12.95196 -12.91144 -12.70877 -12.58439 -12.45485 -12.39620 -12.29902 -11.92294 -11.85464 -11.74446 -11.54501 -11.45707 -11.25887 -11.18265 -10.96612 -10.54882 -9.92068 -9.29065 -8.97284 -8.08797 -6.28210 -0.27256 0.42502 0.99785 1.17478 1.36952 1.40830 1.43955 1.51703 1.75419 1.86462 2.41054 2.75791 3.17461 3.33493 3.44393 3.52907 3.84848 3.93090 3.93654 4.01846 4.04352 4.08003 4.14813 4.35965 4.38366 4.45216 4.48222 4.61212 4.67543 4.71732 4.88005 4.94757 4.96879 5.03640 5.13749 5.16713 5.21203 5.31996 5.40197 5.44272 5.45193 5.55434 5.72558 5.75196 5.83962 6.01486 6.07063 6.23215 6.40779 6.91759 6.93974 6.97296 7.43071 8.93738 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.003078 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.440248 B = 9095.460671 C =11020.381338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.464 3.536 5 O -0.529 6.529 6 C 0.067 3.933 7 N -0.532 5.532 8 C 0.204 3.796 9 C -0.550 4.550 10 H 0.070 0.930 11 C 0.021 3.979 12 N -0.923 5.923 13 Si 0.946 3.054 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.257 1.257 17 C 0.099 3.901 18 C -0.071 4.071 19 C -0.078 4.078 20 C -0.134 4.134 21 C 0.125 3.875 22 N -0.331 5.331 23 C 0.259 3.741 24 N -0.561 5.561 25 C 0.202 3.798 26 N -0.346 5.346 27 C -0.123 4.123 28 C -0.079 4.079 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.143 0.857 36 H -0.012 1.012 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.250 0.750 44 H 0.256 0.744 45 H 0.137 0.863 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 4.209 -10.981 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.062 4.062 7 N -0.256 5.256 8 C 0.078 3.922 9 C -0.589 4.589 10 H 0.088 0.912 11 C -0.179 4.179 12 N -0.562 5.562 13 Si 0.772 3.228 14 H -0.209 1.209 15 H -0.214 1.214 16 H -0.181 1.181 17 C -0.027 4.027 18 C -0.072 4.072 19 C -0.097 4.097 20 C -0.155 4.155 21 C 0.033 3.967 22 N -0.114 5.114 23 C -0.035 4.035 24 N -0.288 5.288 25 C -0.100 4.100 26 N -0.172 5.172 27 C -0.142 4.142 28 C -0.098 4.098 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.160 0.840 36 H 0.006 0.994 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.164 0.836 43 H 0.266 0.734 44 H 0.272 0.728 45 H 0.155 0.845 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.432 3.293 -11.716 12.177 hybrid contribution -0.337 0.458 2.048 2.126 sum -0.768 3.751 -9.668 10.399 Atomic orbital electron populations 1.21797 0.89841 1.04348 1.03802 1.23216 0.97396 0.79691 1.01825 1.86476 1.24165 1.33329 1.84286 1.24180 0.80313 0.93474 0.71326 1.90624 1.61113 1.44266 1.45727 1.21590 0.89790 0.89240 1.05566 1.62113 1.05530 1.30080 1.27858 1.19413 0.95812 0.93931 0.83049 1.21930 1.34509 1.08567 0.93881 0.91169 1.25674 0.94873 0.97218 1.00104 1.70101 1.38814 1.31146 1.16162 0.85743 0.77696 0.80384 0.79014 1.20908 1.21377 1.18078 1.21021 0.89644 0.90364 1.01676 1.19970 0.95926 0.98023 0.93271 1.21138 0.92464 0.97277 0.98802 1.20906 0.95677 1.02958 0.95929 1.17659 0.78287 1.04392 0.96341 1.47776 1.06212 1.49057 1.08389 1.26864 0.83817 0.95265 0.97565 1.70668 1.23464 1.23612 1.11057 1.26879 0.94764 0.96381 0.91947 1.78053 1.06048 1.25158 1.07988 1.20921 0.93736 1.02008 0.97581 1.21109 0.93410 0.96952 0.98302 0.90518 0.88170 0.91670 0.91248 0.93083 0.89938 0.83972 0.99414 0.96312 0.92928 0.87666 0.92861 0.85627 0.83602 0.73423 0.72817 0.84499 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.29 71.98 0.74 -1.77 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.37 -11.76 10.22 -51.44 -0.53 -12.29 16 4 C 0.46 17.51 7.54 71.23 0.54 18.04 16 5 O -0.53 -24.15 14.90 21.98 0.33 -23.83 16 6 C 0.07 2.24 5.42 85.55 0.46 2.70 16 7 N -0.53 -20.60 4.29 -909.92 -3.91 -24.51 16 8 C 0.20 10.09 4.40 85.56 0.38 10.47 16 9 C -0.55 -27.02 6.75 25.60 0.17 -26.85 16 10 H 0.07 3.22 5.97 -2.91 -0.02 3.21 16 11 C 0.02 1.11 5.46 84.66 0.46 1.57 16 12 N -0.92 -52.29 13.29 21.45 0.28 -52.00 16 13 Si 0.95 40.43 29.54 68.60 2.03 42.46 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 17 C 0.10 3.14 4.90 85.56 0.42 3.56 16 18 C -0.07 -2.29 4.88 -19.84 -0.10 -2.38 16 19 C -0.08 -2.67 7.98 22.25 0.18 -2.49 16 20 C -0.13 -4.05 9.47 22.38 0.21 -3.83 16 21 C 0.13 3.77 6.70 38.09 0.26 4.03 16 22 N -0.33 -9.53 3.82 -191.26 -0.73 -10.26 16 23 C 0.26 6.45 11.98 180.26 2.16 8.61 16 24 N -0.56 -14.57 11.19 -203.73 -2.28 -16.85 16 25 C 0.20 4.77 13.03 180.75 2.35 7.13 16 26 N -0.35 -9.87 12.06 -61.22 -0.74 -10.61 16 27 C -0.12 -3.57 9.68 22.38 0.22 -3.36 16 28 C -0.08 -2.24 9.69 22.25 0.22 -2.02 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.78 8.13 -2.38 -0.02 1.76 16 33 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 34 H 0.08 2.89 6.40 -2.38 -0.02 2.87 16 35 H 0.14 3.40 7.81 -2.39 -0.02 3.38 16 36 H -0.01 -0.72 6.58 -2.39 -0.02 -0.74 16 37 H 0.02 1.02 6.21 -2.39 -0.01 1.01 16 38 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.11 2.49 7.80 -2.39 -0.02 2.47 16 40 H 0.05 1.79 6.30 -2.39 -0.02 1.78 16 41 H 0.13 4.90 7.46 -2.91 -0.02 4.88 16 42 H 0.15 3.63 6.81 -2.91 -0.02 3.61 16 43 H 0.25 4.25 7.10 -2.91 -0.02 4.23 16 44 H 0.26 3.57 8.06 -2.91 -0.02 3.55 16 45 H 0.14 3.78 7.74 -2.91 -0.02 3.76 16 46 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -72.03 386.28 4.58 -67.46 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 1.01 Total: 25.17 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 9.11 Total: 15.25 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -7.37 Total: -114.23 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.20 Total: -36.12 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -72.03 4.58 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139333044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.613 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds