Wall clock time and date at job start Sat Apr 11 2020 07:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36565 * 125.06604 * 2 1 4 4 C 1.34455 * 109.97634 * 180.02562 * 3 2 1 5 5 C 1.46255 * 107.03427 * 0.02562 * 4 3 2 6 6 C 1.39911 * 133.83874 * 180.02562 * 5 4 3 7 7 C 1.36195 * 119.96366 * 179.97438 * 6 5 4 8 8 C 1.40240 * 120.37544 * 359.97438 * 7 6 5 9 9 C 1.47578 * 119.83115 * 180.02562 * 8 7 6 10 10 O 1.21593 * 119.99995 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00056 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27917 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 N 1.46896 * 109.47256 * 180.02562 * 13 12 11 15 15 C 1.46903 * 111.00106 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47212 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99995 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00130 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00317 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00114 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00461 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99613 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00139 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46959 * 89.99748 * 23 21 19 25 25 H 1.48496 * 109.47021 * 209.99927 * 23 21 19 26 26 H 1.48499 * 109.47173 * 329.99925 * 23 21 19 27 27 C 1.39287 * 120.33542 * 0.29055 * 8 7 6 28 28 C 1.37817 * 125.07557 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46864 * 89.97472 * 1 2 3 30 30 H 1.08996 * 109.46543 * 209.96830 * 1 2 3 31 31 H 1.08997 * 109.47198 * 329.97359 * 1 2 3 32 32 H 1.07995 * 125.01499 * 0.04476 * 3 2 1 33 33 H 1.08002 * 126.48440 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.01533 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.81294 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 38 38 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 39 39 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 40 40 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 41 41 H 1.00898 * 111.00589 * 56.04557 * 14 13 12 42 42 H 1.08999 * 109.46866 * 299.99546 * 15 14 13 43 43 H 1.09000 * 109.47494 * 59.99570 * 15 14 13 44 44 H 0.97000 * 120.00374 * 359.97438 * 18 16 15 45 45 H 0.96995 * 119.99630 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.16222 * 179.71163 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.1178 0.0000 4 6 3.5478 0.7677 -0.0006 5 6 3.5974 -0.6940 -0.0016 6 6 4.6389 -1.6282 -0.0020 7 6 4.3573 -2.9608 -0.0025 8 6 3.0270 -3.4045 -0.0020 9 6 2.7356 -4.8512 -0.0019 10 8 1.5833 -5.2393 -0.0010 11 7 3.7468 -5.7423 -0.0029 12 6 3.4575 -7.1784 -0.0090 13 6 4.7709 -7.9631 -0.0158 14 7 4.4809 -9.4032 -0.0226 15 6 5.7214 -10.1900 -0.0286 16 6 5.3846 -11.6589 -0.0348 17 8 4.2252 -12.0152 -0.0338 18 7 6.3716 -12.5766 -0.0415 19 6 6.0652 -13.9128 -0.0466 20 1 5.0329 -14.2302 -0.0457 21 6 7.0828 -14.8590 -0.0529 22 7 8.3389 -14.4729 -0.0546 23 14 6.6652 -16.6797 -0.0606 24 1 6.5518 -17.1556 -1.4628 25 1 7.7377 -17.4364 0.6338 26 1 5.3741 -16.8945 0.6409 27 6 1.9793 -2.4867 -0.0071 28 6 2.2570 -1.1279 -0.0005 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3632 -0.8903 0.5133 31 1 -0.3633 0.8897 0.5142 32 1 1.8817 2.1331 0.0007 33 1 4.3939 1.4390 -0.0011 34 1 5.6655 -1.2929 -0.0020 35 1 5.1632 -3.6798 -0.0033 36 1 4.6661 -5.4326 -0.0040 37 1 2.8842 -7.4373 0.8812 38 1 2.8800 -7.4290 -0.8988 39 1 5.3443 -7.7042 -0.9060 40 1 5.3486 -7.7126 0.8739 41 1 3.8921 -9.6499 -0.8039 42 1 6.3019 -9.9463 -0.9184 43 1 6.3050 -9.9552 0.8615 44 1 7.2988 -12.2917 -0.0427 45 1 9.0492 -15.1334 -0.0594 46 1 0.9558 -2.8315 -0.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146644036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:06 Heat of formation + Delta-G solvation = -3.229725 kcal Electronic energy + Delta-G solvation = -27347.600074 eV Core-core repulsion = 23237.810288 eV Total energy + Delta-G solvation = -4109.789785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77882 -39.93662 -38.31470 -37.14415 -36.25487 -34.38311 -33.73932 -33.31936 -31.23835 -30.83485 -30.27365 -28.79274 -26.74256 -26.07268 -24.26123 -23.30565 -22.61127 -22.03632 -20.93883 -20.30150 -19.27325 -18.08885 -17.87714 -17.22718 -16.61794 -16.26261 -16.05172 -15.86627 -15.78593 -15.15675 -14.94519 -14.53827 -14.49599 -14.17841 -13.99722 -13.91625 -13.71194 -13.51591 -13.39350 -13.24232 -13.10836 -12.87081 -12.42398 -12.28882 -11.90243 -11.66746 -11.50912 -11.45068 -11.38862 -11.36184 -11.02314 -10.38327 -10.21535 -10.15508 -10.10075 -9.50392 -9.25085 -8.64080 -8.49067 -8.11397 -8.09548 -7.95749 -6.41261 -3.81976 0.41707 1.08042 2.13762 2.28479 2.78610 2.91770 3.18843 3.27583 3.33982 3.63103 3.90932 4.12209 4.19869 4.23808 4.31751 4.37754 4.50241 4.64952 4.70853 4.83355 4.88796 4.94171 4.99955 5.06010 5.16297 5.19532 5.24186 5.27290 5.41272 5.46913 5.59862 5.74198 5.83986 5.91352 5.94697 5.97607 6.08340 6.18618 6.25423 6.29495 6.30827 6.71678 6.78015 7.11297 7.31015 7.56074 7.58842 8.03432 8.06793 8.61656 9.18515 9.54524 10.05991 10.76495 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.001330 C = 0.001289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.460551 B =21043.767460 C =21724.122343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.484 5.484 3 C 0.059 3.941 4 C -0.210 4.210 5 C -0.087 4.087 6 C -0.077 4.077 7 C -0.115 4.115 8 C -0.118 4.118 9 C 0.561 3.439 10 O -0.538 6.538 11 N -0.723 5.723 12 C 0.120 3.880 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.057 4.057 28 C 0.081 3.919 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.150 0.850 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.400 0.600 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 35.119 -0.725 35.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.167 5.167 3 C -0.067 4.067 4 C -0.235 4.235 5 C -0.092 4.092 6 C -0.096 4.096 7 C -0.135 4.135 8 C -0.122 4.122 9 C 0.348 3.652 10 O -0.416 6.416 11 N -0.375 5.375 12 C -0.003 4.003 13 C -0.081 4.081 14 N -0.299 5.299 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.079 4.079 28 C -0.024 4.024 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.188 0.812 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.235 0.765 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.656 34.415 -0.036 35.487 hybrid contribution 1.255 -0.389 -0.918 1.603 sum -7.400 34.026 -0.954 34.835 Atomic orbital electron populations 1.22021 0.76769 1.04546 1.03351 1.43841 1.06146 1.04237 1.62489 1.21903 0.90561 0.91172 1.03038 1.21732 0.96075 0.92769 1.12913 1.19401 0.92013 0.93786 1.04022 1.20174 0.98202 0.91610 0.99606 1.20714 0.95004 0.95932 1.01814 1.19478 0.93549 0.92365 1.06852 1.18107 0.85021 0.85683 0.76358 1.90796 1.20410 1.80679 1.49745 1.45796 1.09452 1.06752 1.75511 1.21306 0.97474 0.77971 1.03594 1.22083 0.95824 0.89129 1.01076 1.59919 1.16724 1.01578 1.51649 1.21669 0.91461 0.93546 1.01341 1.19782 0.86417 0.86689 0.84592 1.90534 1.19551 1.81208 1.55305 1.41850 1.07853 1.05921 1.64362 1.19719 0.94931 0.80714 1.47573 0.87887 1.25260 0.94686 1.00663 0.97288 1.69612 0.98810 1.35289 1.50629 0.85852 0.78225 0.81813 0.78375 1.20428 1.20923 1.19377 1.20052 0.99786 0.88480 0.99549 1.18092 0.90306 0.88096 1.05932 0.90974 0.89762 0.89673 0.81237 0.83278 0.85294 0.85529 0.76474 0.90004 0.91196 0.94870 0.90394 0.82786 0.93698 0.89444 0.77454 0.91883 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.02 59.85 0.66 0.94 16 2 N -0.48 -3.41 3.18 -121.85 -0.39 -3.79 16 3 C 0.06 0.34 11.28 -16.78 -0.19 0.15 16 4 C -0.21 -1.44 11.08 -37.70 -0.42 -1.85 16 5 C -0.09 -0.78 6.37 -105.05 -0.67 -1.45 16 6 C -0.08 -0.61 10.03 -39.69 -0.40 -1.01 16 7 C -0.11 -0.93 9.46 -39.56 -0.37 -1.31 16 8 C -0.12 -1.23 5.87 -104.95 -0.62 -1.84 16 9 C 0.56 6.92 7.76 -12.45 -0.10 6.82 16 10 O -0.54 -8.64 16.31 5.28 0.09 -8.55 16 11 N -0.72 -7.32 5.50 -61.34 -0.34 -7.66 16 12 C 0.12 1.42 5.93 -4.04 -0.02 1.39 16 13 C 0.05 0.56 5.80 -3.83 -0.02 0.54 16 14 N -0.67 -10.60 6.12 -115.06 -0.70 -11.30 16 15 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 16 C 0.44 10.40 7.82 -10.99 -0.09 10.32 16 17 O -0.58 -15.95 15.78 5.55 0.09 -15.86 16 18 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 19 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.06 -0.59 9.49 -39.03 -0.37 -0.96 16 28 C 0.08 0.76 6.80 -84.00 -0.57 0.19 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.08 0.14 8.13 -51.93 -0.42 -0.29 16 32 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 33 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.70 6.36 -52.48 -0.33 0.36 16 36 H 0.40 2.86 6.46 -40.82 -0.26 2.60 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.13 1.36 7.62 -52.49 -0.40 0.96 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -36.14 395.81 -9.33 -45.46 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -6.23 Total: 12.98 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -3.45 Total: 4.78 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.76 Total: -60.87 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.17 Total: -24.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.14 -9.33 -45.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146644036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.234 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds