Wall clock time and date at job start Sat Apr 11 2020 07:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46790 * 2 1 4 4 C 1.36943 * 119.99881 * 275.90804 * 3 2 1 5 5 H 1.08002 * 119.99415 * 34.09232 * 4 3 2 6 6 C 1.38812 * 120.00241 * 214.09194 * 4 3 2 7 7 N 1.31619 * 119.99798 * 17.00985 * 6 4 3 8 8 Si 1.86795 * 119.99916 * 197.00847 * 6 4 3 9 9 H 1.48499 * 109.47359 * 60.00237 * 8 6 4 10 10 H 1.48501 * 109.46841 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47263 * 300.00001 * 8 6 4 12 12 C 1.46495 * 120.00500 * 95.90845 * 3 2 1 13 13 H 1.08999 * 109.47594 * 177.15607 * 12 3 2 14 14 C 1.53000 * 109.47072 * 57.16078 * 12 3 2 15 15 C 1.52997 * 109.47456 * 297.16229 * 12 3 2 16 16 N 1.46503 * 109.47073 * 304.99853 * 15 12 3 17 17 C 1.34771 * 120.00481 * 179.97438 * 16 15 12 18 18 O 1.21558 * 119.99714 * 359.97438 * 17 16 15 19 19 C 1.47810 * 120.00395 * 180.02562 * 17 16 15 20 20 C 1.39657 * 120.02548 * 359.71720 * 19 17 16 21 21 C 1.37736 * 119.97501 * 179.79052 * 20 19 17 22 22 C 1.39438 * 120.02494 * 0.46598 * 21 20 19 23 23 C 1.48394 * 119.97492 * 179.76267 * 22 21 20 24 24 N 1.35226 * 126.41420 * 359.73960 * 23 22 21 25 25 C 1.30970 * 105.57952 * 179.84294 * 24 23 22 26 26 O 1.33673 * 107.12366 * 0.41274 * 25 24 23 27 27 N 1.21290 * 110.02406 * 359.72970 * 26 25 24 28 28 C 1.39442 * 120.04851 * 359.79361 * 22 21 20 29 29 C 1.37725 * 120.02983 * 359.97049 * 28 22 21 30 30 H 1.08990 * 109.47085 * 60.00450 * 1 2 3 31 31 H 1.09002 * 109.46398 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47370 * 299.99711 * 1 2 3 33 33 H 1.08994 * 109.47427 * 239.99940 * 2 1 3 34 34 H 1.09004 * 109.47224 * 119.99580 * 2 1 3 35 35 H 0.97002 * 120.00004 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47168 * 299.99922 * 14 12 3 37 37 H 1.09001 * 109.47526 * 59.99768 * 14 12 3 38 38 H 1.08994 * 109.47568 * 180.02562 * 14 12 3 39 39 H 1.09001 * 109.47279 * 64.99269 * 15 12 3 40 40 H 1.09000 * 109.47742 * 184.99689 * 15 12 3 41 41 H 0.97007 * 119.99369 * 359.97438 * 16 15 12 42 42 H 1.08001 * 120.01042 * 0.03506 * 20 19 17 43 43 H 1.07995 * 119.98665 * 180.25618 * 21 20 19 44 44 H 1.08009 * 126.43668 * 180.14322 * 25 24 23 45 45 H 1.07998 * 119.98042 * 180.02562 * 28 22 21 46 46 H 1.08002 * 120.01701 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1797 5 1 1.4231 1.8926 -1.9761 6 6 3.1562 2.9877 -1.3519 7 7 4.1988 2.9695 -0.5487 8 14 3.0558 4.2518 -2.7235 9 1 1.8466 5.0928 -2.5340 10 1 4.2666 5.1111 -2.6943 11 1 2.9746 3.5561 -4.0328 12 6 2.3855 2.0284 1.2619 13 1 2.7709 3.0277 1.0591 14 6 3.4622 1.1998 1.9655 15 6 1.1518 2.1303 2.1609 16 7 0.0787 2.8206 1.4411 17 6 -1.1111 3.0257 2.0399 18 8 -1.2941 2.6375 3.1772 19 6 -2.1940 3.7218 1.3134 20 6 -1.9828 4.1724 0.0085 21 6 -2.9940 4.8170 -0.6690 22 6 -4.2250 5.0284 -0.0491 23 6 -5.3119 5.7277 -0.7782 24 7 -5.2489 6.2157 -2.0378 25 6 -6.4252 6.7426 -2.2702 26 8 -7.1574 6.5737 -1.1646 27 7 -6.5080 5.9925 -0.3211 28 6 -4.4352 4.5837 1.2557 29 6 -3.4272 3.9346 1.9334 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.9148 3.6128 -0.6688 36 1 3.0770 0.2005 2.1684 37 1 4.3413 1.1272 1.3251 38 1 3.7352 1.6810 2.9046 39 1 0.8191 1.1294 2.4362 40 1 1.4036 2.6900 3.0617 41 1 0.2246 3.1301 0.5334 42 1 -1.0283 4.0119 -0.4705 43 1 -2.8323 5.1619 -1.6796 44 1 -6.7425 7.2268 -3.1820 45 1 -5.3892 4.7477 1.7346 46 1 -3.5901 3.5906 2.9442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156491549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:55 Heat of formation + Delta-G solvation = 83.222204 kcal Electronic energy + Delta-G solvation = -30023.634587 eV Core-core repulsion = 25917.593639 eV Total energy + Delta-G solvation = -4106.040948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.89919 -40.04581 -38.45605 -36.90243 -36.04698 -33.81558 -33.14510 -31.94478 -31.42995 -31.12695 -30.50071 -28.20917 -26.24473 -24.76769 -24.51702 -23.96204 -22.39599 -22.25895 -21.66314 -20.03875 -19.31984 -18.69272 -18.40238 -17.66244 -16.83194 -16.40826 -15.82154 -15.53593 -15.10866 -14.85864 -14.53819 -14.38046 -14.15481 -13.72974 -13.61047 -13.22258 -13.14471 -12.93084 -12.70237 -12.39119 -12.23493 -12.17893 -11.93419 -11.85716 -11.56589 -11.54902 -11.10919 -11.08992 -11.01030 -10.82720 -10.77714 -10.71233 -10.34343 -10.10230 -9.67657 -9.57669 -9.47453 -9.14643 -8.88331 -8.55649 -8.40363 -6.69357 -5.92333 -3.42561 0.26145 1.00993 1.25634 2.05286 2.64867 3.12390 3.23372 3.28443 3.35550 3.37257 3.64803 3.71878 3.91393 4.37875 4.62838 4.78819 4.82105 4.99202 5.20948 5.22526 5.24761 5.35919 5.39281 5.50351 5.64529 5.86205 5.91321 6.04106 6.13732 6.18000 6.21813 6.24029 6.30671 6.35649 6.46309 6.51616 6.58185 6.64902 6.66599 6.80816 6.90009 7.00665 7.14644 7.43692 7.52383 7.72193 7.79432 8.08302 8.39976 8.64174 9.11973 9.73299 10.31315 11.13808 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.003115 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.075533 B = 8987.389494 C =10506.808740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.582 5.582 4 C -0.267 4.267 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.173 3.827 13 H 0.103 0.897 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.691 5.691 17 C 0.545 3.455 18 O -0.553 6.553 19 C -0.103 4.103 20 C -0.086 4.086 21 C -0.079 4.079 22 C -0.014 4.014 23 C 0.216 3.784 24 N -0.477 5.477 25 C 0.162 3.838 26 O 0.080 5.920 27 N -0.374 5.374 28 C -0.093 4.093 29 C -0.067 4.067 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.256 0.744 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.412 0.588 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.265 0.735 45 H 0.134 0.866 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.907 5.856 -1.240 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.397 4.397 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.066 3.934 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.342 5.342 17 C 0.331 3.669 18 O -0.434 6.434 19 C -0.107 4.107 20 C -0.104 4.104 21 C -0.099 4.099 22 C -0.016 4.016 23 C -0.054 4.054 24 N -0.209 5.209 25 C -0.079 4.079 26 O 0.019 5.981 27 N -0.080 5.080 28 C -0.113 4.113 29 C -0.086 4.086 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.250 0.750 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.281 0.719 45 H 0.152 0.848 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.667 5.342 0.239 17.503 hybrid contribution -0.043 0.993 -1.583 1.869 sum -16.710 6.334 -1.344 17.921 Atomic orbital electron populations 1.22426 1.00016 0.99018 1.01427 1.20778 0.91635 0.87468 0.98798 1.43865 1.75942 1.08274 1.02249 1.19055 1.07929 1.18945 0.93748 0.91862 1.25176 0.94458 1.01314 0.97741 1.69989 1.07200 1.36274 1.39637 0.86506 0.77117 0.81615 0.82328 1.20800 1.21648 1.20791 1.20540 0.89025 0.99539 0.84338 0.87968 1.21996 1.01025 0.98155 0.99142 1.22249 0.89044 0.95755 0.95439 1.45935 1.12001 1.57177 1.19054 1.18206 0.82708 0.79893 0.86105 1.90727 1.81955 1.52482 1.18226 1.20337 0.95264 1.00219 0.94848 1.21484 0.99733 0.95784 0.93419 1.21124 0.91052 0.97249 1.00500 1.17489 0.90707 0.99972 0.93440 1.24027 0.92481 0.99906 0.88959 1.72014 1.21178 1.14150 1.13518 1.30491 0.85542 0.97358 0.94477 1.85303 1.39271 1.54040 1.19476 1.74918 1.06466 1.13475 1.13112 1.21066 0.99743 0.97621 0.92875 1.21169 0.91079 0.95890 1.00425 0.93448 0.94817 0.93162 0.94089 0.94416 0.93423 0.94943 0.90581 0.94663 0.92606 0.92760 0.75012 0.83937 0.84141 0.71922 0.84793 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.95 37.16 0.37 -2.66 16 2 C 0.14 2.77 5.75 -4.04 -0.02 2.74 16 3 N -0.58 -12.71 1.88 -165.67 -0.31 -13.02 16 4 C -0.27 -6.42 9.07 -15.06 -0.14 -6.56 16 5 H 0.06 1.53 7.89 -52.49 -0.41 1.11 16 6 C 0.01 0.34 4.86 -17.43 -0.08 0.25 16 7 N -0.89 -23.08 10.90 55.49 0.60 -22.47 16 8 Si 0.89 19.74 29.59 -169.99 -5.03 14.71 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.17 3.61 1.95 -67.93 -0.13 3.48 16 13 H 0.10 2.43 5.94 -51.93 -0.31 2.12 16 14 C -0.14 -2.86 9.05 37.16 0.34 -2.52 16 15 C 0.10 1.91 4.36 -4.04 -0.02 1.89 16 16 N -0.69 -12.50 4.23 -61.26 -0.26 -12.76 16 17 C 0.54 9.74 7.72 -12.35 -0.10 9.65 16 18 O -0.55 -11.28 16.34 5.31 0.09 -11.19 16 19 C -0.10 -1.57 5.88 -104.92 -0.62 -2.18 16 20 C -0.09 -1.20 9.53 -39.24 -0.37 -1.58 16 21 C -0.08 -1.04 9.68 -39.32 -0.38 -1.42 16 22 C -0.01 -0.18 5.88 -104.82 -0.62 -0.80 16 23 C 0.22 2.65 7.79 -156.13 -1.22 1.43 16 24 N -0.48 -5.09 11.24 -13.74 -0.15 -5.24 16 25 C 0.16 1.02 13.39 52.05 0.70 1.71 16 26 O 0.08 0.68 11.29 18.03 0.20 0.89 16 27 N -0.37 -4.33 11.84 30.95 0.37 -3.97 16 28 C -0.09 -1.16 9.67 -39.32 -0.38 -1.54 16 29 C -0.07 -0.91 9.58 -39.24 -0.38 -1.29 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.93 5.32 -51.93 -0.28 0.65 16 33 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.04 0.72 6.29 -51.93 -0.33 0.39 16 35 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 37 H 0.08 1.71 7.69 -51.93 -0.40 1.31 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 1.08 6.98 -51.93 -0.36 0.72 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.41 7.53 5.76 -40.82 -0.23 7.29 16 42 H 0.14 2.01 6.39 -52.49 -0.34 1.67 16 43 H 0.14 1.71 7.86 -52.49 -0.41 1.29 16 44 H 0.27 0.00 8.06 -52.48 -0.42 -0.42 16 45 H 0.13 1.47 7.86 -52.49 -0.41 1.06 16 46 H 0.14 1.88 7.64 -52.49 -0.40 1.47 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -29.82 381.93 -7.68 -37.49 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.89 Total: 9.20 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.05 Total: 0.61 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.25 Total: -57.46 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.29 Total: -10.31 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.82 -7.68 -37.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156491549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.717 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds