Wall clock time and date at job start Sat Apr 11 2020 07:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46790 * 2 1 4 4 C 1.36943 * 119.99881 * 275.90804 * 3 2 1 5 5 H 1.08002 * 119.99415 * 34.09232 * 4 3 2 6 6 C 1.38812 * 120.00241 * 214.09194 * 4 3 2 7 7 N 1.31619 * 119.99798 * 17.00985 * 6 4 3 8 8 Si 1.86795 * 119.99916 * 197.00847 * 6 4 3 9 9 H 1.48499 * 109.47359 * 60.00237 * 8 6 4 10 10 H 1.48501 * 109.46841 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47263 * 300.00001 * 8 6 4 12 12 C 1.46495 * 120.00500 * 95.90845 * 3 2 1 13 13 H 1.08999 * 109.47594 * 177.15607 * 12 3 2 14 14 C 1.53000 * 109.47072 * 57.16078 * 12 3 2 15 15 C 1.52997 * 109.47456 * 297.16229 * 12 3 2 16 16 N 1.46503 * 109.47073 * 304.99853 * 15 12 3 17 17 C 1.34771 * 120.00481 * 179.97438 * 16 15 12 18 18 O 1.21558 * 119.99714 * 359.97438 * 17 16 15 19 19 C 1.47810 * 120.00395 * 180.02562 * 17 16 15 20 20 C 1.39657 * 120.02548 * 359.71720 * 19 17 16 21 21 C 1.37736 * 119.97501 * 179.79052 * 20 19 17 22 22 C 1.39438 * 120.02494 * 0.46598 * 21 20 19 23 23 C 1.48394 * 119.97492 * 179.76267 * 22 21 20 24 24 N 1.35226 * 126.41420 * 359.73960 * 23 22 21 25 25 C 1.30970 * 105.57952 * 179.84294 * 24 23 22 26 26 O 1.33673 * 107.12366 * 0.41274 * 25 24 23 27 27 N 1.21290 * 110.02406 * 359.72970 * 26 25 24 28 28 C 1.39442 * 120.04851 * 359.79361 * 22 21 20 29 29 C 1.37725 * 120.02983 * 359.97049 * 28 22 21 30 30 H 1.08990 * 109.47085 * 60.00450 * 1 2 3 31 31 H 1.09002 * 109.46398 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47370 * 299.99711 * 1 2 3 33 33 H 1.08994 * 109.47427 * 239.99940 * 2 1 3 34 34 H 1.09004 * 109.47224 * 119.99580 * 2 1 3 35 35 H 0.97002 * 120.00004 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47168 * 299.99922 * 14 12 3 37 37 H 1.09001 * 109.47526 * 59.99768 * 14 12 3 38 38 H 1.08994 * 109.47568 * 180.02562 * 14 12 3 39 39 H 1.09001 * 109.47279 * 64.99269 * 15 12 3 40 40 H 1.09000 * 109.47742 * 184.99689 * 15 12 3 41 41 H 0.97007 * 119.99369 * 359.97438 * 16 15 12 42 42 H 1.08001 * 120.01042 * 0.03506 * 20 19 17 43 43 H 1.07995 * 119.98665 * 180.25618 * 21 20 19 44 44 H 1.08009 * 126.43668 * 180.14322 * 25 24 23 45 45 H 1.07998 * 119.98042 * 180.02562 * 28 22 21 46 46 H 1.08002 * 120.01701 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1797 5 1 1.4231 1.8926 -1.9761 6 6 3.1562 2.9877 -1.3519 7 7 4.1988 2.9695 -0.5487 8 14 3.0558 4.2518 -2.7235 9 1 1.8466 5.0928 -2.5340 10 1 4.2666 5.1111 -2.6943 11 1 2.9746 3.5561 -4.0328 12 6 2.3855 2.0284 1.2619 13 1 2.7709 3.0277 1.0591 14 6 3.4622 1.1998 1.9655 15 6 1.1518 2.1303 2.1609 16 7 0.0787 2.8206 1.4411 17 6 -1.1111 3.0257 2.0399 18 8 -1.2941 2.6375 3.1772 19 6 -2.1940 3.7218 1.3134 20 6 -1.9828 4.1724 0.0085 21 6 -2.9940 4.8170 -0.6690 22 6 -4.2250 5.0284 -0.0491 23 6 -5.3119 5.7277 -0.7782 24 7 -5.2489 6.2157 -2.0378 25 6 -6.4252 6.7426 -2.2702 26 8 -7.1574 6.5737 -1.1646 27 7 -6.5080 5.9925 -0.3211 28 6 -4.4352 4.5837 1.2557 29 6 -3.4272 3.9346 1.9334 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.9148 3.6128 -0.6688 36 1 3.0770 0.2005 2.1684 37 1 4.3413 1.1272 1.3251 38 1 3.7352 1.6810 2.9046 39 1 0.8191 1.1294 2.4362 40 1 1.4036 2.6900 3.0617 41 1 0.2246 3.1301 0.5334 42 1 -1.0283 4.0119 -0.4705 43 1 -2.8323 5.1619 -1.6796 44 1 -6.7425 7.2268 -3.1820 45 1 -5.3892 4.7477 1.7346 46 1 -3.5901 3.5906 2.9442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156491549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:54 Heat of formation + Delta-G solvation = 65.443092 kcal Electronic energy + Delta-G solvation = -30024.405547 eV Core-core repulsion = 25917.593639 eV Total energy + Delta-G solvation = -4106.811909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -46.63973 -41.31531 -39.71001 -38.51819 -36.83916 -35.35305 -34.04105 -33.71287 -32.83319 -32.18311 -31.69274 -29.92445 -27.57647 -25.90642 -25.74074 -25.30964 -23.56176 -23.20306 -23.13981 -21.33553 -20.99581 -19.53654 -19.14695 -19.01046 -18.44638 -17.43039 -17.05946 -16.68741 -16.44847 -16.37351 -15.90869 -15.72646 -15.48248 -15.23367 -14.75409 -14.47719 -14.29806 -14.27342 -13.97927 -13.76270 -13.72632 -13.48222 -13.21517 -13.19509 -12.84477 -12.77045 -12.73996 -12.51024 -12.42646 -12.37437 -12.07910 -12.04726 -11.84079 -11.57682 -11.35535 -11.16258 -11.03422 -10.41155 -10.18923 -10.07771 -9.74920 -8.50299 -7.80508 -5.32066 -0.75160 0.21266 0.35968 1.17022 1.52368 1.55663 1.59656 1.91674 2.11987 2.25903 2.50029 2.56112 2.75284 3.01014 3.33768 3.62603 3.69634 3.75166 3.82322 4.00216 4.15290 4.24838 4.32157 4.46636 4.54874 4.58239 4.68485 4.69262 4.81077 4.85953 4.87397 4.90310 4.93179 4.98265 5.07306 5.16145 5.16795 5.23497 5.25168 5.33509 5.47030 5.58892 5.61934 5.72220 5.77406 5.85956 6.51777 6.63696 7.12226 7.19610 7.26604 7.93977 8.47223 9.22894 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.003115 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.075533 B = 8987.389494 C =10506.808740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.264 4.264 5 H 0.062 0.938 6 C -0.028 4.028 7 N -0.914 5.914 8 Si 0.947 3.053 9 H -0.271 1.271 10 H -0.302 1.302 11 H -0.283 1.283 12 C 0.179 3.821 13 H 0.074 0.926 14 C -0.135 4.135 15 C 0.113 3.887 16 N -0.691 5.691 17 C 0.548 3.452 18 O -0.582 6.582 19 C -0.122 4.122 20 C -0.084 4.084 21 C -0.080 4.080 22 C -0.010 4.010 23 C 0.192 3.808 24 N -0.512 5.512 25 C 0.193 3.807 26 O 0.087 5.913 27 N -0.390 5.390 28 C -0.089 4.089 29 C -0.064 4.064 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.249 0.751 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.411 0.589 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.323 0.677 45 H 0.150 0.850 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.390 6.655 -2.335 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.395 4.395 5 H 0.080 0.920 6 C -0.226 4.226 7 N -0.557 5.557 8 Si 0.776 3.224 9 H -0.196 1.196 10 H -0.229 1.229 11 H -0.209 1.209 12 C 0.071 3.929 13 H 0.092 0.908 14 C -0.194 4.194 15 C -0.013 4.013 16 N -0.341 5.341 17 C 0.335 3.665 18 O -0.464 6.464 19 C -0.126 4.126 20 C -0.103 4.103 21 C -0.100 4.100 22 C -0.012 4.012 23 C -0.077 4.077 24 N -0.244 5.244 25 C -0.046 4.046 26 O 0.024 5.976 27 N -0.095 5.095 28 C -0.109 4.109 29 C -0.083 4.083 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.249 0.751 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.338 0.662 45 H 0.167 0.833 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.159 6.125 -0.862 20.133 hybrid contribution 0.585 0.785 -1.331 1.652 sum -18.574 6.910 -2.193 19.939 Atomic orbital electron populations 1.22242 0.98255 1.00217 1.00702 1.20845 0.92842 0.86332 0.98704 1.43980 1.76077 1.09109 1.02029 1.19218 1.07278 1.18695 0.94260 0.92037 1.25704 0.94387 1.02909 0.99562 1.70124 1.07716 1.36759 1.41141 0.85674 0.76794 0.79771 0.80156 1.19624 1.22864 1.20906 1.20395 0.89924 0.98123 0.84430 0.90831 1.21864 0.99496 0.98941 0.99114 1.22002 0.88463 0.95857 0.94983 1.45894 1.12079 1.57195 1.18915 1.18532 0.82868 0.79287 0.85768 1.90702 1.82449 1.53832 1.19461 1.20153 0.95130 1.01861 0.95414 1.21426 0.99906 0.95898 0.93029 1.21176 0.90912 0.97108 1.00809 1.17677 0.90967 0.99037 0.93564 1.23973 0.92662 1.01198 0.89899 1.71994 1.23452 1.15815 1.13091 1.31698 0.83689 0.94535 0.94650 1.85270 1.38938 1.53445 1.19907 1.74914 1.06356 1.13901 1.14347 1.21179 0.99934 0.96972 0.92769 1.21224 0.90750 0.95734 1.00564 0.94098 0.92640 0.93849 0.95034 0.93618 0.94220 0.93640 0.93494 0.92995 0.92706 0.92563 0.75119 0.84331 0.83299 0.66221 0.83270 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.95 71.98 0.72 -4.64 16 2 C 0.14 5.40 5.75 86.38 0.50 5.90 16 3 N -0.59 -25.83 1.88 -678.05 -1.28 -27.11 16 4 C -0.26 -12.74 9.07 84.03 0.76 -11.98 16 5 H 0.06 2.96 7.89 -2.91 -0.02 2.93 16 6 C -0.03 -1.38 4.86 84.86 0.41 -0.97 16 7 N -0.91 -48.42 10.90 21.65 0.24 -48.18 16 8 Si 0.95 40.81 29.59 68.60 2.03 42.84 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 10 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 C 0.18 7.51 1.95 44.99 0.09 7.60 16 13 H 0.07 3.57 5.94 -2.39 -0.01 3.56 16 14 C -0.13 -5.36 9.05 71.98 0.65 -4.71 16 15 C 0.11 4.26 4.36 86.38 0.38 4.64 16 16 N -0.69 -25.12 4.23 -466.01 -1.97 -27.09 16 17 C 0.55 19.65 7.72 86.78 0.67 20.32 16 18 O -0.58 -23.79 16.34 -3.90 -0.06 -23.85 16 19 C -0.12 -3.70 5.88 -20.06 -0.12 -3.82 16 20 C -0.08 -2.34 9.53 22.49 0.21 -2.12 16 21 C -0.08 -2.03 9.68 22.44 0.22 -1.82 16 22 C -0.01 -0.26 5.88 -19.99 -0.12 -0.38 16 23 C 0.19 4.38 7.79 137.29 1.07 5.45 16 24 N -0.51 -9.67 11.24 -314.70 -3.54 -13.21 16 25 C 0.19 1.69 13.39 130.49 1.75 3.44 16 26 O 0.09 1.24 11.29 74.57 0.84 2.08 16 27 N -0.39 -8.26 11.84 -59.20 -0.70 -8.96 16 28 C -0.09 -2.12 9.67 22.44 0.22 -1.90 16 29 C -0.06 -1.71 9.58 22.49 0.22 -1.50 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.56 5.32 -2.39 -0.01 1.55 16 33 H 0.03 1.28 8.09 -2.39 -0.02 1.26 16 34 H 0.05 1.70 6.29 -2.39 -0.02 1.68 16 35 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 36 H 0.04 1.65 6.56 -2.38 -0.02 1.63 16 37 H 0.05 2.13 7.69 -2.39 -0.02 2.12 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 2.09 6.98 -2.39 -0.02 2.08 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.41 15.16 5.76 -92.70 -0.53 14.63 16 42 H 0.14 3.92 6.39 -2.91 -0.02 3.90 16 43 H 0.15 3.47 7.86 -2.91 -0.02 3.45 16 44 H 0.32 -1.81 8.06 -2.91 -0.02 -1.84 16 45 H 0.15 3.07 7.86 -2.91 -0.02 3.05 16 46 H 0.15 3.77 7.64 -2.91 -0.02 3.75 16 Total: -1.00 -65.19 381.93 3.67 -61.52 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.49 Total: 28.46 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 7.62 Total: 13.50 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -7.25 Total: -124.55 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.78 Total: -21.77 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -65.19 3.67 -61.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156491549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.962 kcal (2) G-P(sol) polarization free energy of solvation -65.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds