Wall clock time and date at job start Sat Apr 11 2020 07:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47402 * 2 1 4 4 C 1.34227 * 117.00652 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00494 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47245 * 39.99948 * 6 4 3 8 8 N 1.46903 * 109.47160 * 160.00171 * 6 4 3 9 9 C 1.53004 * 109.47017 * 280.00137 * 6 4 3 10 10 C 1.50703 * 109.46767 * 174.99989 * 9 6 4 11 11 C 1.34604 * 125.88227 * 125.00153 * 10 9 6 12 12 N 1.37210 * 106.83124 * 179.97438 * 11 10 9 13 13 C 1.39368 * 126.49775 * 179.97438 * 12 11 10 14 14 C 1.39452 * 119.41033 * 180.02562 * 13 12 11 15 15 C 1.36687 * 119.50822 * 179.97438 * 14 13 12 16 16 C 1.41257 * 118.38527 * 0.02562 * 15 14 13 17 17 C 1.41223 * 120.59564 * 179.72188 * 16 15 14 18 18 H 1.08000 * 120.00053 * 154.88968 * 17 16 15 19 19 C 1.39932 * 119.99974 * 334.89857 * 17 16 15 20 20 N 1.30843 * 120.00000 * 343.98730 * 19 17 16 21 21 Si 1.86809 * 119.99872 * 163.98438 * 19 17 16 22 22 H 1.48498 * 109.47026 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46807 * 120.00106 * 21 19 17 24 24 H 1.48498 * 109.46852 * 240.00115 * 21 19 17 25 25 C 1.40782 * 118.81204 * 0.02562 * 16 15 14 26 26 C 1.50704 * 119.82455 * 180.02562 * 25 16 15 27 27 N 1.31460 * 120.35523 * 0.02562 * 25 16 15 28 28 C 1.36017 * 107.00728 * 0.24196 * 12 11 10 29 29 N 1.30461 * 108.54530 * 359.59615 * 28 12 11 30 30 H 1.08997 * 109.47245 * 300.00085 * 1 2 3 31 31 H 1.09004 * 109.46973 * 59.99628 * 1 2 3 32 32 H 1.08995 * 109.47053 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47524 * 240.00749 * 2 1 3 34 34 H 1.09002 * 109.47676 * 120.00146 * 2 1 3 35 35 H 1.00897 * 111.00171 * 296.04246 * 8 6 4 36 36 H 1.00894 * 110.99973 * 60.00319 * 8 6 4 37 37 H 1.08996 * 109.47290 * 55.00118 * 9 6 4 38 38 H 1.08998 * 109.47177 * 294.99905 * 9 6 4 39 39 H 1.08005 * 126.58490 * 359.97438 * 11 10 9 40 40 H 1.07999 * 120.24392 * 0.02562 * 14 13 12 41 41 H 1.08003 * 120.81105 * 179.97438 * 15 14 13 42 42 H 0.97010 * 119.99765 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47386 * 89.99330 * 26 25 16 44 44 H 1.08997 * 109.46827 * 210.00237 * 26 25 16 45 45 H 1.09003 * 109.46680 * 329.99706 * 26 25 16 46 46 H 1.08004 * 125.72966 * 179.75783 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.3319 3.5739 0.6617 8 7 5.3104 2.8923 0.4753 9 6 3.8847 3.5049 -1.4193 10 6 4.3458 4.9395 -1.3989 11 6 5.3460 5.4572 -2.1360 12 7 5.4309 6.7878 -1.8118 13 6 6.3313 7.7131 -2.3366 14 6 6.2868 9.0362 -1.8986 15 6 7.1693 9.9453 -2.4115 16 6 8.1022 9.5049 -3.3765 17 6 9.0313 10.4058 -3.9416 18 1 9.9654 10.0387 -4.3406 19 6 8.7418 11.7742 -3.9845 20 7 7.5147 12.1893 -3.8005 21 14 10.1073 13.0082 -4.3046 22 1 11.3945 12.2882 -4.4777 23 1 9.8002 13.7776 -5.5370 24 1 10.2127 13.9396 -3.1528 25 6 8.0848 8.1531 -3.7695 26 6 9.0703 7.6586 -4.7968 27 7 7.2136 7.3199 -3.2451 28 6 4.4736 7.0312 -0.8767 29 7 3.8296 5.9209 -0.6433 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 5.3554 2.5818 1.4342 36 1 5.8771 2.3081 -0.1210 37 1 2.8662 3.4560 -1.8043 38 1 4.5441 2.9204 -2.0609 39 1 5.9633 4.9271 -2.8462 40 1 5.5609 9.3403 -1.1589 41 1 7.1532 10.9755 -2.0876 42 1 7.3140 13.1380 -3.8306 43 1 9.9747 7.3133 -4.2961 44 1 8.6282 6.8349 -5.3573 45 1 9.3206 8.4701 -5.4802 46 1 4.2775 7.9844 -0.4082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163416671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:14 Heat of formation + Delta-G solvation = -21.453770 kcal Electronic energy + Delta-G solvation = -28648.473828 eV Core-core repulsion = 24537.893789 eV Total energy + Delta-G solvation = -4110.580039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.03463 -41.68106 -40.41176 -38.08408 -36.73466 -36.11500 -34.66682 -33.14653 -32.61229 -32.06590 -31.46013 -29.24429 -28.67549 -26.90661 -25.68604 -24.10468 -23.73276 -22.86548 -21.91199 -21.62991 -20.33119 -19.36192 -19.02592 -18.86464 -17.75133 -17.61231 -17.21736 -16.98329 -16.61309 -16.27838 -15.71957 -15.53219 -15.25286 -15.00286 -14.82636 -14.67848 -14.47550 -14.14281 -14.02999 -13.67848 -13.62109 -13.48497 -13.47038 -13.34738 -12.98132 -12.90475 -12.83392 -12.69858 -12.55676 -12.44003 -12.26564 -11.85039 -11.71628 -11.55337 -11.38203 -10.94220 -10.88857 -10.33416 -10.18171 -9.98173 -9.39749 -9.05754 -8.77114 -6.43779 0.30364 0.86023 0.98756 1.32834 1.42799 1.57283 1.60788 1.72352 1.98493 2.16721 2.22839 2.68053 3.31714 3.55092 3.62743 3.69088 3.78213 3.92805 3.99685 4.06669 4.11607 4.17584 4.32236 4.36424 4.48530 4.50942 4.63029 4.69595 4.81465 4.83055 4.91588 4.93760 4.96063 5.03212 5.07702 5.13037 5.14628 5.37768 5.40517 5.40997 5.52032 5.79266 5.84640 5.92840 5.97511 6.33134 6.34541 6.52083 6.62261 6.65623 6.70530 7.16312 7.53173 8.14673 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.001860 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.336282 B =15047.793919 C =15460.798772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.360 6.360 4 C 0.438 3.562 5 O -0.538 6.538 6 C 0.123 3.877 7 H 0.121 0.879 8 N -0.811 5.811 9 C -0.009 4.009 10 C 0.007 3.993 11 C -0.045 4.045 12 N -0.375 5.375 13 C 0.162 3.838 14 C -0.142 4.142 15 C -0.138 4.138 16 C 0.038 3.962 17 C -0.449 4.449 18 H 0.099 0.901 19 C 0.035 3.965 20 N -0.807 5.807 21 Si 0.987 3.013 22 H -0.252 1.252 23 H -0.267 1.267 24 H -0.265 1.265 25 C 0.008 3.992 26 C -0.065 4.065 27 N -0.478 5.478 28 C 0.170 3.830 29 N -0.493 5.493 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.351 0.649 36 H 0.351 0.649 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.166 0.834 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.296 0.704 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 -12.453 4.950 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.275 6.275 4 C 0.279 3.721 5 O -0.428 6.428 6 C 0.008 3.992 7 H 0.139 0.861 8 N -0.341 5.341 9 C -0.048 4.048 10 C -0.122 4.122 11 C -0.178 4.178 12 N -0.052 5.052 13 C -0.064 4.064 14 C -0.164 4.164 15 C -0.163 4.163 16 C 0.033 3.967 17 C -0.477 4.477 18 H 0.117 0.883 19 C -0.183 4.183 20 N -0.431 5.431 21 Si 0.807 3.193 22 H -0.175 1.175 23 H -0.191 1.191 24 H -0.190 1.190 25 C -0.136 4.136 26 C -0.123 4.123 27 N -0.189 5.189 28 C -0.111 4.111 29 N -0.212 5.212 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.183 0.817 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.058 -12.636 5.064 15.819 hybrid contribution 0.945 0.449 -0.232 1.072 sum -7.113 -12.186 4.832 14.915 Atomic orbital electron populations 1.21829 0.90551 1.04339 1.03728 1.23308 0.97141 0.79451 1.02466 1.86597 1.24264 1.33646 1.82982 1.25790 0.80940 0.94391 0.70932 1.90638 1.61064 1.44009 1.47102 1.21269 0.90425 0.87540 1.00004 0.86104 1.59076 1.06442 1.60330 1.08261 1.19705 1.02881 0.88510 0.93724 1.20181 0.97455 0.95606 0.98912 1.22522 1.04233 0.84212 1.06864 1.42688 1.24660 1.07825 1.30019 1.17646 0.97604 0.87577 1.03567 1.21020 1.01556 0.91439 1.02338 1.21343 0.97935 0.99467 0.97562 1.18745 0.93415 0.93079 0.91454 1.19981 1.03556 0.91670 1.32463 0.88321 1.26909 0.98424 1.01199 0.91740 1.69816 1.21077 1.18977 1.33228 0.85049 0.78314 0.77061 0.78830 1.17475 1.19149 1.19006 1.21372 0.99247 0.90864 1.02114 1.20283 0.95713 1.00656 0.95641 1.66141 1.04200 1.39571 1.09030 1.25408 0.90079 1.00637 0.94936 1.70030 1.27618 0.98659 1.24919 0.91324 0.91349 0.88161 0.91323 0.91357 0.83482 0.83420 0.88556 0.89484 0.81711 0.84857 0.85397 0.89265 0.91583 0.92123 0.90706 0.76178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 71.98 0.74 -0.84 16 2 C 0.05 0.81 6.19 71.98 0.45 1.26 16 3 O -0.36 -7.67 10.22 -51.38 -0.53 -8.19 16 4 C 0.44 10.16 7.19 71.23 0.51 10.67 16 5 O -0.54 -14.53 16.00 21.96 0.35 -14.18 16 6 C 0.12 2.84 3.24 44.17 0.14 2.98 16 7 H 0.12 2.93 8.10 -2.39 -0.02 2.91 16 8 N -0.81 -18.96 8.70 -171.80 -1.49 -20.46 16 9 C -0.01 -0.23 5.41 29.85 0.16 -0.07 16 10 C 0.01 0.24 6.08 41.37 0.25 0.49 16 11 C -0.04 -1.66 11.03 83.02 0.92 -0.74 16 12 N -0.38 -15.03 2.97 -355.47 -1.06 -16.09 16 13 C 0.16 7.29 7.51 132.95 1.00 8.29 16 14 C -0.14 -6.19 9.42 22.20 0.21 -5.98 16 15 C -0.14 -6.56 8.73 22.65 0.20 -6.36 16 16 C 0.04 1.86 5.58 -21.18 -0.12 1.74 16 17 C -0.45 -20.73 8.15 23.41 0.19 -20.54 16 18 H 0.10 4.26 6.86 -2.91 -0.02 4.24 16 19 C 0.04 1.54 5.19 85.25 0.44 1.98 16 20 N -0.81 -36.87 10.93 21.82 0.24 -36.64 16 21 Si 0.99 32.79 29.59 68.60 2.03 34.82 16 22 H -0.25 -8.10 7.11 99.48 0.71 -7.39 16 23 H -0.27 -8.63 7.11 99.48 0.71 -7.92 16 24 H -0.27 -8.61 7.11 99.48 0.71 -7.91 16 25 C 0.01 0.40 6.86 43.24 0.30 0.69 16 26 C -0.07 -2.50 9.59 71.24 0.68 -1.82 16 27 N -0.48 -22.53 9.77 -178.87 -1.75 -24.28 16 28 C 0.17 6.03 11.89 179.96 2.14 8.17 16 29 N -0.49 -17.04 11.18 -187.61 -2.10 -19.13 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 34 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 35 H 0.35 7.18 9.06 -89.70 -0.81 6.37 16 36 H 0.35 8.04 8.58 -89.70 -0.77 7.27 16 37 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 1.99 8.11 -2.39 -0.02 1.97 16 39 H 0.17 5.97 8.06 -2.91 -0.02 5.95 16 40 H 0.13 4.90 6.70 -2.91 -0.02 4.88 16 41 H 0.13 6.16 6.25 -2.91 -0.02 6.14 16 42 H 0.30 12.10 8.30 -92.70 -0.77 11.33 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.07 2.76 6.75 -2.39 -0.02 2.74 16 46 H 0.22 6.40 7.01 -2.91 -0.02 6.38 16 Total: -1.00 -59.82 391.91 3.36 -56.46 By element: Atomic # 1 Polarization: 48.31 SS G_CDS: -0.54 Total: 47.77 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 8.21 Total: -0.08 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -6.16 Total: -116.60 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.17 Total: -22.37 kcal Atomic # 14 Polarization: 32.79 SS G_CDS: 2.03 Total: 34.82 kcal Total: -59.82 3.36 -56.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163416671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.003 kcal (2) G-P(sol) polarization free energy of solvation -59.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds