Wall clock time and date at job start Sat Apr 11 2020 07:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34874 * 117.00002 * 2 1 4 4 O 1.21602 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.46704 * 120.00130 * 179.72547 * 3 2 1 6 6 C 1.36064 * 125.46515 * 179.69188 * 5 3 2 7 7 C 1.41233 * 107.57202 * 179.84311 * 6 5 3 8 8 C 1.40053 * 134.37171 * 180.02562 * 7 6 5 9 9 N 1.31980 * 118.64433 * 180.36147 * 8 7 6 10 10 C 1.32909 * 121.19858 * 0.02562 * 9 8 7 11 11 N 1.38236 * 118.79482 * 179.97438 * 10 9 8 12 12 C 1.46847 * 110.99852 * 236.04421 * 11 10 9 13 13 C 1.53037 * 109.52320 * 174.15862 * 12 11 10 14 14 C 1.53119 * 109.27627 * 59.18415 * 13 12 11 15 15 C 1.53123 * 109.15585 * 302.34306 * 14 13 12 16 16 H 1.08996 * 109.50533 * 297.67375 * 15 14 13 17 17 C 1.50708 * 109.49989 * 177.59745 * 15 14 13 18 18 H 1.07999 * 120.00162 * 0.02562 * 17 15 14 19 19 C 1.37873 * 119.99996 * 179.97438 * 17 15 14 20 20 N 1.31518 * 119.99918 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00295 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46937 * 89.99682 * 21 19 17 23 23 H 1.48497 * 109.47494 * 210.00274 * 21 19 17 24 24 H 1.48506 * 109.46941 * 330.00480 * 21 19 17 25 25 C 1.46842 * 111.00094 * 111.83589 * 11 10 9 26 26 N 1.32264 * 122.40963 * 359.97438 * 10 9 8 27 27 C 1.32913 * 120.50934 * 359.97438 * 26 10 9 28 28 N 1.36637 * 133.93475 * 179.97438 * 27 26 10 29 29 C 1.46495 * 125.54768 * 0.06240 * 28 27 26 30 30 H 1.09002 * 109.46640 * 60.00144 * 1 2 3 31 31 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46967 * 299.99941 * 1 2 3 33 33 H 1.07998 * 126.21603 * 0.02562 * 6 5 3 34 34 H 1.08004 * 120.67904 * 0.34592 * 8 7 6 35 35 H 1.09006 * 109.46254 * 294.17764 * 12 11 10 36 36 H 1.09009 * 109.46048 * 54.15440 * 12 11 10 37 37 H 1.09002 * 109.50091 * 179.12015 * 13 12 11 38 38 H 1.08997 * 109.50198 * 299.24167 * 13 12 11 39 39 H 1.08993 * 109.52464 * 62.24840 * 14 13 12 40 40 H 1.08997 * 109.52311 * 182.38126 * 14 13 12 41 41 H 0.97006 * 120.00080 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.46455 * 305.85909 * 25 11 10 43 43 H 1.09000 * 109.46171 * 65.82050 * 25 11 10 44 44 H 1.08998 * 109.47199 * 269.98404 * 29 28 27 45 45 H 1.09007 * 109.47363 * 29.98213 * 29 28 27 46 46 H 1.08997 * 109.47295 * 149.97975 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2216 -0.0005 5 6 3.5293 1.2786 0.0061 6 6 4.2597 2.4265 0.0007 7 6 5.6245 2.0636 0.0134 8 6 6.8283 2.7794 0.0156 9 7 7.9641 2.1072 0.0220 10 6 7.9775 0.7782 0.0258 11 7 9.1956 0.1247 0.0319 12 6 9.3013 -0.8021 -1.1023 13 6 10.7106 -1.3968 -1.1472 14 6 10.9905 -2.1335 0.1656 15 6 10.8264 -1.1578 1.3342 16 1 11.5573 -0.3544 1.2428 17 6 11.0423 -1.8889 2.6342 18 1 11.2738 -2.9438 2.6285 19 6 10.9454 -1.2110 3.8308 20 7 10.6639 0.0737 3.8377 21 14 11.2122 -2.1173 5.4422 22 1 12.6496 -2.0589 5.8107 23 1 10.4012 -1.4787 6.5096 24 1 10.7983 -3.5350 5.2871 25 6 9.4138 -0.5699 1.3071 26 7 6.8681 0.0581 0.0239 27 6 5.6787 0.6511 0.0185 28 7 4.3912 0.1936 0.0149 29 6 3.9878 -1.2147 0.0177 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.8671 3.4326 -0.0082 34 1 6.8273 3.8595 0.0120 35 1 8.5722 -1.6039 -0.9853 36 1 9.1043 -0.2646 -2.0300 37 1 10.7840 -2.0964 -1.9799 38 1 11.4392 -0.5968 -1.2780 39 1 10.2864 -2.9580 0.2778 40 1 12.0085 -2.5227 0.1550 41 1 10.5953 0.5507 4.6796 42 1 9.2983 0.1360 2.1296 43 1 8.6842 -1.3728 1.4128 44 1 3.8914 -1.5670 -1.0093 45 1 4.7415 -1.8076 0.5359 46 1 3.0304 -1.3174 0.5284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166741573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:24 Heat of formation + Delta-G solvation = 24.571927 kcal Electronic energy + Delta-G solvation = -30235.210379 eV Core-core repulsion = 26126.626164 eV Total energy + Delta-G solvation = -4108.584215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19168 -40.61820 -39.32385 -37.48148 -36.89374 -34.16945 -33.18696 -32.56946 -32.08200 -29.60501 -29.55917 -28.03279 -27.03136 -25.19614 -24.99766 -23.46049 -22.57540 -21.82160 -21.40213 -20.28566 -18.93650 -18.38930 -18.05275 -17.24061 -16.93247 -16.58938 -16.13695 -15.80137 -15.41438 -15.08808 -14.53448 -14.41515 -14.16475 -13.75720 -13.69815 -13.67265 -13.63151 -13.32861 -12.83065 -12.76833 -12.61374 -12.33115 -12.21542 -12.02235 -11.72855 -11.25400 -11.18633 -10.98249 -10.89432 -10.83752 -10.79251 -10.45667 -10.20463 -10.16286 -9.66306 -9.10667 -9.06604 -9.01132 -8.87492 -8.41704 -8.19017 -7.85706 -6.00493 -4.07733 0.28313 1.46534 1.62150 2.02045 2.34136 2.76286 3.29839 3.36972 3.39564 3.74377 3.96503 4.14595 4.36126 4.41164 4.42992 4.68278 4.74928 4.78143 4.93119 5.06514 5.10611 5.13347 5.27789 5.34199 5.43125 5.49118 5.58100 5.66527 5.80664 5.88460 5.93689 6.11523 6.20706 6.40069 6.45075 6.55662 6.60932 6.68944 6.75837 6.91722 6.98949 7.06887 7.20997 7.30110 7.53783 7.68393 7.88970 7.94904 8.10426 8.43027 8.51623 8.97021 9.57237 11.04899 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.002922 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.393583 B = 9580.475984 C =10229.727915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.540 3.460 4 O -0.491 6.491 5 C 0.013 3.987 6 C -0.053 4.053 7 C -0.249 4.249 8 C 0.235 3.765 9 N -0.506 5.506 10 C 0.548 3.452 11 N -0.474 5.474 12 C 0.072 3.928 13 C -0.114 4.114 14 C -0.113 4.113 15 C 0.055 3.945 16 H 0.039 0.961 17 C -0.515 4.515 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.885 5.885 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.077 3.923 26 N -0.559 5.559 27 C 0.351 3.649 28 N -0.447 5.447 29 C 0.077 3.923 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.167 0.833 34 H 0.177 0.823 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.261 0.739 42 H 0.106 0.894 43 H 0.023 0.977 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.988 1.466 -10.245 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.384 3.616 4 O -0.379 6.379 5 C -0.092 4.092 6 C -0.081 4.081 7 C -0.258 4.258 8 C 0.057 3.943 9 N -0.221 5.221 10 C 0.193 3.807 11 N -0.200 5.200 12 C -0.055 4.055 13 C -0.152 4.152 14 C -0.150 4.150 15 C 0.036 3.964 16 H 0.057 0.943 17 C -0.553 4.553 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.048 4.048 26 N -0.284 5.284 27 C 0.108 3.892 28 N -0.134 5.134 29 C -0.064 4.064 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.184 0.816 34 H 0.193 0.807 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.124 0.876 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.183 1.301 -10.151 19.999 hybrid contribution -1.611 -0.700 1.082 2.063 sum -18.794 0.601 -9.069 20.876 Atomic orbital electron populations 1.23341 0.75434 1.04046 1.02917 1.86630 1.24107 1.32200 1.84486 1.19745 0.86623 0.81976 0.73230 1.90922 1.65193 1.35718 1.46043 1.18971 0.86650 0.87270 1.16346 1.20795 0.90142 0.97563 0.99639 1.19617 0.95822 0.95088 1.15264 1.22986 0.84636 1.00415 0.86304 1.68269 1.28809 1.08725 1.16307 1.21213 0.87009 0.86551 0.85902 1.59676 1.21130 1.32054 1.07112 1.21993 0.98135 0.93780 0.91617 1.21619 0.95638 0.99455 0.98498 1.21701 1.00146 0.98654 0.94548 1.18708 0.91881 0.93843 0.91955 0.94283 1.21156 1.47995 0.95739 0.90447 0.92375 1.25028 0.94987 0.94833 0.99168 1.69879 1.48277 1.07686 1.26439 0.86615 0.78211 0.79882 0.83434 1.20560 1.21310 1.19956 1.22635 0.99574 0.96611 0.85948 1.67683 0.96430 1.42673 1.21595 1.18335 0.85594 0.89197 0.96123 1.43831 1.02285 1.06745 1.60514 1.22207 1.02811 0.77554 1.03784 0.91547 0.87753 0.91524 0.81584 0.80655 0.93886 0.92471 0.92603 0.91421 0.93519 0.92908 0.92866 0.87645 0.95857 0.90770 0.89035 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.28 16 2 O -0.36 -3.32 7.89 -40.97 -0.32 -3.64 16 3 C 0.54 6.20 7.92 34.15 0.27 6.47 16 4 O -0.49 -6.38 16.63 -19.34 -0.32 -6.70 16 5 C 0.01 0.16 6.81 -82.18 -0.56 -0.40 16 6 C -0.05 -0.64 10.54 -39.23 -0.41 -1.05 16 7 C -0.25 -3.61 6.21 -106.89 -0.66 -4.28 16 8 C 0.23 3.42 11.39 -16.81 -0.19 3.23 16 9 N -0.51 -9.58 10.44 -13.63 -0.14 -9.72 16 10 C 0.55 11.18 6.23 -322.81 -2.01 9.17 16 11 N -0.47 -10.24 4.71 -175.43 -0.83 -11.06 16 12 C 0.07 1.34 5.17 -3.83 -0.02 1.32 16 13 C -0.11 -2.02 6.09 -26.65 -0.16 -2.19 16 14 C -0.11 -2.33 5.23 -26.61 -0.14 -2.47 16 15 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 16 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 17 C -0.51 -13.97 8.56 -34.44 -0.29 -14.27 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 20 N -0.88 -25.35 11.34 55.43 0.63 -24.72 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 25 C 0.08 1.89 4.35 -3.84 -0.02 1.87 16 26 N -0.56 -10.70 9.67 -13.17 -0.13 -10.82 16 27 C 0.35 5.81 7.95 -155.99 -1.24 4.57 16 28 N -0.45 -6.11 3.21 -119.53 -0.38 -6.49 16 29 C 0.08 0.82 10.54 59.84 0.63 1.45 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.18 1.74 8.06 -52.48 -0.42 1.31 16 35 H 0.04 0.81 7.89 -51.93 -0.41 0.40 16 36 H 0.06 0.98 8.10 -51.92 -0.42 0.56 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.11 2.96 6.07 -51.93 -0.32 2.64 16 43 H 0.02 0.59 8.09 -51.93 -0.42 0.17 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 46 H 0.10 0.87 6.08 -51.93 -0.32 0.55 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -32.59 379.69 -11.34 -43.93 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.50 Total: -0.15 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -4.05 Total: 7.49 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -0.85 Total: -62.82 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.65 Total: -10.34 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.59 -11.34 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.497 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds