Wall clock time and date at job start Sat Apr 11 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34874 * 117.00002 * 2 1 4 4 O 1.21602 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.46704 * 120.00130 * 179.72547 * 3 2 1 6 6 C 1.36064 * 125.46515 * 179.69188 * 5 3 2 7 7 C 1.41233 * 107.57202 * 179.84311 * 6 5 3 8 8 C 1.40053 * 134.37171 * 180.02562 * 7 6 5 9 9 N 1.31980 * 118.64433 * 180.36147 * 8 7 6 10 10 C 1.32909 * 121.19858 * 0.02562 * 9 8 7 11 11 N 1.38236 * 118.79482 * 179.97438 * 10 9 8 12 12 C 1.46847 * 110.99852 * 236.04421 * 11 10 9 13 13 C 1.53037 * 109.52320 * 174.15862 * 12 11 10 14 14 C 1.53119 * 109.27627 * 59.18415 * 13 12 11 15 15 C 1.53123 * 109.15585 * 302.34306 * 14 13 12 16 16 H 1.08996 * 109.50533 * 297.67375 * 15 14 13 17 17 C 1.50708 * 109.49989 * 177.59745 * 15 14 13 18 18 H 1.07999 * 120.00162 * 0.02562 * 17 15 14 19 19 C 1.37873 * 119.99996 * 179.97438 * 17 15 14 20 20 N 1.31518 * 119.99918 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00295 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46937 * 89.99682 * 21 19 17 23 23 H 1.48497 * 109.47494 * 210.00274 * 21 19 17 24 24 H 1.48506 * 109.46941 * 330.00480 * 21 19 17 25 25 C 1.46842 * 111.00094 * 111.83589 * 11 10 9 26 26 N 1.32264 * 122.40963 * 359.97438 * 10 9 8 27 27 C 1.32913 * 120.50934 * 359.97438 * 26 10 9 28 28 N 1.36637 * 133.93475 * 179.97438 * 27 26 10 29 29 C 1.46495 * 125.54768 * 0.06240 * 28 27 26 30 30 H 1.09002 * 109.46640 * 60.00144 * 1 2 3 31 31 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46967 * 299.99941 * 1 2 3 33 33 H 1.07998 * 126.21603 * 0.02562 * 6 5 3 34 34 H 1.08004 * 120.67904 * 0.34592 * 8 7 6 35 35 H 1.09006 * 109.46254 * 294.17764 * 12 11 10 36 36 H 1.09009 * 109.46048 * 54.15440 * 12 11 10 37 37 H 1.09002 * 109.50091 * 179.12015 * 13 12 11 38 38 H 1.08997 * 109.50198 * 299.24167 * 13 12 11 39 39 H 1.08993 * 109.52464 * 62.24840 * 14 13 12 40 40 H 1.08997 * 109.52311 * 182.38126 * 14 13 12 41 41 H 0.97006 * 120.00080 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.46455 * 305.85909 * 25 11 10 43 43 H 1.09000 * 109.46171 * 65.82050 * 25 11 10 44 44 H 1.08998 * 109.47199 * 269.98404 * 29 28 27 45 45 H 1.09007 * 109.47363 * 29.98213 * 29 28 27 46 46 H 1.08997 * 109.47295 * 149.97975 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2216 -0.0005 5 6 3.5293 1.2786 0.0061 6 6 4.2597 2.4265 0.0007 7 6 5.6245 2.0636 0.0134 8 6 6.8283 2.7794 0.0156 9 7 7.9641 2.1072 0.0220 10 6 7.9775 0.7782 0.0258 11 7 9.1956 0.1247 0.0319 12 6 9.3013 -0.8021 -1.1023 13 6 10.7106 -1.3968 -1.1472 14 6 10.9905 -2.1335 0.1656 15 6 10.8264 -1.1578 1.3342 16 1 11.5573 -0.3544 1.2428 17 6 11.0423 -1.8889 2.6342 18 1 11.2738 -2.9438 2.6285 19 6 10.9454 -1.2110 3.8308 20 7 10.6639 0.0737 3.8377 21 14 11.2122 -2.1173 5.4422 22 1 12.6496 -2.0589 5.8107 23 1 10.4012 -1.4787 6.5096 24 1 10.7983 -3.5350 5.2871 25 6 9.4138 -0.5699 1.3071 26 7 6.8681 0.0581 0.0239 27 6 5.6787 0.6511 0.0185 28 7 4.3912 0.1936 0.0149 29 6 3.9878 -1.2147 0.0177 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.8671 3.4326 -0.0082 34 1 6.8273 3.8595 0.0120 35 1 8.5722 -1.6039 -0.9853 36 1 9.1043 -0.2646 -2.0300 37 1 10.7840 -2.0964 -1.9799 38 1 11.4392 -0.5968 -1.2780 39 1 10.2864 -2.9580 0.2778 40 1 12.0085 -2.5227 0.1550 41 1 10.5953 0.5507 4.6796 42 1 9.2983 0.1360 2.1296 43 1 8.6842 -1.3728 1.4128 44 1 3.8914 -1.5670 -1.0093 45 1 4.7415 -1.8076 0.5359 46 1 3.0304 -1.3174 0.5284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:23 Heat of formation + Delta-G solvation = 6.466716 kcal Electronic energy + Delta-G solvation = -30235.995480 eV Core-core repulsion = 26126.626164 eV Total energy + Delta-G solvation = -4109.369316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.32646 -41.59031 -40.62497 -38.94960 -37.72537 -35.68758 -34.81528 -33.84383 -33.55323 -31.42860 -30.65189 -28.85532 -27.98222 -27.00181 -26.38873 -24.82270 -23.66197 -23.41510 -22.86717 -21.26355 -20.53394 -19.53652 -19.26793 -18.58032 -18.01921 -17.77996 -17.57101 -16.89109 -16.72715 -16.42220 -16.18284 -15.95855 -15.30916 -15.02688 -14.85834 -14.75800 -14.57065 -14.51592 -14.40363 -14.26714 -14.10240 -13.54825 -13.43159 -13.01648 -12.94755 -12.88388 -12.63766 -12.33287 -12.21290 -12.17308 -12.03597 -12.01937 -11.92171 -11.79090 -11.46923 -10.89348 -10.86002 -10.53530 -10.41915 -10.13772 -9.52389 -9.30996 -8.10239 -6.25658 -0.82737 0.21775 0.54805 1.02437 1.40644 1.40816 1.48766 1.51245 1.79415 2.32980 2.43811 2.67574 3.06964 3.18204 3.28610 3.47747 3.66118 3.76341 3.95953 4.12148 4.14926 4.22329 4.28696 4.29958 4.33645 4.34455 4.49600 4.57216 4.60404 4.72647 4.75173 4.84826 4.86866 4.90261 5.03185 5.04912 5.11685 5.23532 5.25547 5.32647 5.50204 5.52780 5.59704 5.80625 5.89774 5.93380 6.08864 6.37109 6.40491 6.44905 6.87072 7.16639 7.43126 8.93761 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.002922 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.393583 B = 9580.475984 C =10229.727915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.547 3.453 4 O -0.506 6.506 5 C 0.013 3.987 6 C -0.045 4.045 7 C -0.244 4.244 8 C 0.239 3.761 9 N -0.539 5.539 10 C 0.520 3.480 11 N -0.486 5.486 12 C 0.075 3.925 13 C -0.105 4.105 14 C -0.106 4.106 15 C 0.052 3.948 16 H 0.003 0.997 17 C -0.533 4.533 18 H 0.059 0.941 19 C 0.012 3.988 20 N -0.914 5.914 21 Si 0.955 3.045 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.105 3.895 26 N -0.575 5.575 27 C 0.317 3.683 28 N -0.444 5.444 29 C 0.074 3.926 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.067 0.933 33 H 0.199 0.801 34 H 0.223 0.777 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.003 0.997 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.137 1.211 -11.123 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.392 3.608 4 O -0.394 6.394 5 C -0.093 4.093 6 C -0.073 4.073 7 C -0.253 4.253 8 C 0.063 3.937 9 N -0.255 5.255 10 C 0.164 3.836 11 N -0.212 5.212 12 C -0.052 4.052 13 C -0.143 4.143 14 C -0.144 4.144 15 C 0.033 3.967 16 H 0.022 0.978 17 C -0.572 4.572 18 H 0.077 0.923 19 C -0.187 4.187 20 N -0.553 5.553 21 Si 0.780 3.220 22 H -0.198 1.198 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.021 4.021 26 N -0.300 5.300 27 C 0.074 3.926 28 N -0.131 5.131 29 C -0.066 4.066 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.216 0.784 34 H 0.239 0.761 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.022 0.978 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.372 1.024 -11.052 22.327 hybrid contribution -1.182 -0.597 1.318 1.868 sum -20.555 0.427 -9.734 22.747 Atomic orbital electron populations 1.23689 0.73293 1.06221 1.03179 1.86610 1.26084 1.30843 1.83805 1.19512 0.86016 0.82414 0.72864 1.90923 1.65309 1.36365 1.46838 1.19334 0.87457 0.87078 1.15418 1.21133 0.88623 0.98981 0.98544 1.19867 0.97024 0.94240 1.14210 1.23728 0.83510 1.02196 0.84252 1.68235 1.30993 1.08283 1.17992 1.21048 0.86907 0.87145 0.88464 1.59495 1.23044 1.32258 1.06358 1.22052 0.98474 0.93422 0.91254 1.21590 0.94907 0.99789 0.98012 1.21586 1.00593 0.97774 0.94442 1.18652 0.91143 0.93669 0.93259 0.97847 1.21533 1.47908 0.95957 0.91780 0.92266 1.25827 0.94757 0.95539 1.02593 1.70053 1.49146 1.09141 1.26982 0.85604 0.78274 0.78907 0.79191 1.19799 1.21257 1.19069 1.22006 0.98572 0.94851 0.86702 1.67485 0.97230 1.43221 1.22040 1.18629 0.85805 0.90538 0.97627 1.44077 1.01468 1.08046 1.59495 1.22380 1.03119 0.76107 1.04946 0.91162 0.84699 0.91421 0.78398 0.76083 0.94380 0.90763 0.88667 0.91731 0.93499 0.92182 0.93107 0.91754 0.97839 0.89126 0.90471 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 113.37 1.20 1.46 16 2 O -0.36 -5.68 7.89 -57.88 -0.46 -6.14 16 3 C 0.55 11.26 7.92 70.03 0.55 11.81 16 4 O -0.51 -11.86 16.63 19.50 0.32 -11.54 16 5 C 0.01 0.29 6.81 39.79 0.27 0.56 16 6 C -0.05 -0.98 10.54 22.50 0.24 -0.75 16 7 C -0.24 -6.81 6.21 -21.34 -0.13 -6.95 16 8 C 0.24 6.74 11.39 85.11 0.97 7.71 16 9 N -0.54 -20.78 10.44 -197.02 -2.06 -22.84 16 10 C 0.52 21.97 6.23 261.49 1.63 23.60 16 11 N -0.49 -21.86 4.71 -708.94 -3.34 -25.20 16 12 C 0.07 2.80 5.17 86.33 0.45 3.25 16 13 C -0.11 -3.65 6.09 30.65 0.19 -3.46 16 14 C -0.11 -4.43 5.23 30.68 0.16 -4.27 16 15 C 0.05 2.71 2.26 -11.49 -0.03 2.68 16 16 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 17 C -0.53 -29.90 8.56 25.60 0.22 -29.68 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 19 C 0.01 0.67 5.30 84.65 0.45 1.12 16 20 N -0.91 -54.67 11.34 21.45 0.24 -54.43 16 21 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 C 0.10 5.44 4.35 86.32 0.38 5.82 16 26 N -0.57 -22.65 9.67 -195.60 -1.89 -24.54 16 27 C 0.32 10.49 7.95 134.25 1.07 11.55 16 28 N -0.44 -11.71 3.21 -532.07 -1.71 -13.42 16 29 C 0.07 1.51 10.54 127.77 1.35 2.85 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.20 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.22 3.82 8.06 -2.91 -0.02 3.79 16 35 H 0.04 1.45 7.89 -2.38 -0.02 1.43 16 36 H 0.07 2.51 8.10 -2.38 -0.02 2.49 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 42 H 0.06 3.86 6.07 -2.39 -0.01 3.84 16 43 H 0.00 0.18 8.09 -2.39 -0.02 0.16 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 46 H 0.12 1.87 6.08 -2.39 -0.01 1.86 16 Total: -1.00 -74.83 379.69 3.10 -71.73 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.00 Total: 12.72 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 8.95 Total: 27.31 kcal Atomic # 7 Polarization: -131.68 SS G_CDS: -8.75 Total: -140.43 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.13 Total: -17.67 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -74.83 3.10 -71.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.198 kcal (2) G-P(sol) polarization free energy of solvation -74.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds