Wall clock time and date at job start Sat Apr 11 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46946 * 2 1 4 4 C 1.42899 * 113.99751 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46969 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99977 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99701 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00354 * 0.02562 * 7 5 4 9 9 C 1.46504 * 119.99644 * 180.02562 * 7 5 4 10 10 C 1.52992 * 109.47089 * 95.33164 * 9 7 5 11 11 H 1.08995 * 110.00156 * 53.37149 * 10 9 7 12 12 C 1.54338 * 109.99202 * 292.33268 * 10 9 7 13 13 C 1.55154 * 103.02440 * 218.66381 * 12 10 9 14 14 C 1.54915 * 101.57876 * 35.30969 * 13 12 10 15 15 N 1.47022 * 109.88439 * 174.47053 * 10 9 7 16 16 C 1.34776 * 125.64736 * 298.39781 * 15 10 9 17 17 O 1.21285 * 119.99817 * 354.64394 * 16 15 10 18 18 C 1.50699 * 120.00555 * 174.64910 * 16 15 10 19 19 S 1.80998 * 109.47538 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99976 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00399 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00106 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99746 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00322 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47452 * 59.99636 * 24 22 20 26 26 H 1.48504 * 109.47536 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47049 * 299.99917 * 24 22 20 28 28 H 1.09004 * 109.47069 * 60.00280 * 1 2 3 29 29 H 1.09007 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47438 * 299.99871 * 1 2 3 31 31 H 1.08994 * 109.47119 * 239.99688 * 2 1 3 32 32 H 1.09004 * 109.47069 * 119.99720 * 2 1 3 33 33 H 1.09005 * 109.46783 * 59.99867 * 4 3 2 34 34 H 1.08994 * 109.47321 * 300.00230 * 4 3 2 35 35 H 1.09004 * 109.47109 * 265.66206 * 8 7 5 36 36 H 1.09002 * 109.46915 * 25.66085 * 8 7 5 37 37 H 1.08994 * 109.47142 * 145.66225 * 8 7 5 38 38 H 1.09004 * 109.47073 * 335.32689 * 9 7 5 39 39 H 1.08999 * 109.46910 * 215.33334 * 9 7 5 40 40 H 1.09006 * 110.84733 * 100.19766 * 12 10 9 41 41 H 1.08996 * 110.66653 * 337.05494 * 12 10 9 42 42 H 1.09000 * 111.00785 * 277.23781 * 13 12 10 43 43 H 1.09001 * 111.00445 * 153.37527 * 13 12 10 44 44 H 1.08997 * 110.36780 * 204.14835 * 14 13 12 45 45 H 1.09005 * 110.45871 * 81.87524 * 14 13 12 46 46 H 1.09006 * 109.47038 * 59.99535 * 18 16 15 47 47 H 1.09004 * 109.46840 * 300.00157 * 18 16 15 48 48 H 0.96998 * 119.99986 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 -0.0001 6 8 2.9610 3.7729 -0.0005 7 7 5.1209 3.2663 0.0008 8 6 6.1579 2.2315 0.0019 9 6 5.4986 4.6818 0.0007 10 6 5.7585 5.1404 1.4370 11 1 6.4822 4.4797 1.9141 12 6 4.4398 5.1366 2.2389 13 6 4.5625 6.4080 3.1196 14 6 5.3112 7.3744 2.1680 15 7 6.2653 6.5205 1.4373 16 6 7.4097 6.9372 0.8600 17 8 8.1663 6.1306 0.3621 18 6 7.7493 8.4052 0.8333 19 16 9.3367 8.6422 -0.0033 20 6 9.4813 10.3948 0.1056 21 1 8.7063 10.9717 0.5885 22 6 10.5910 11.0342 -0.4292 23 7 11.5358 10.3312 -1.0173 24 14 10.7447 12.8922 -0.3131 25 1 10.7489 13.3004 1.1147 26 1 12.0119 13.3253 -0.9550 27 1 9.5956 13.5282 -1.0063 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8339 0.9764 -0.8892 34 1 3.8332 0.9768 0.8907 35 1 6.4692 2.0301 1.0270 36 1 5.7610 1.3190 -0.4432 37 1 7.0149 2.5753 -0.5772 38 1 4.6903 5.2735 -0.4291 39 1 6.4028 4.8165 -0.5930 40 1 4.3656 4.2434 2.8593 41 1 3.5826 5.2120 1.5699 42 1 5.1507 6.2078 4.0151 43 1 3.5790 6.7997 3.3794 44 1 5.8433 8.1340 2.7406 45 1 4.6131 7.8430 1.4743 46 1 7.8173 8.7810 1.8543 47 1 6.9710 8.9484 0.2973 48 1 12.3116 10.7779 -1.3908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333524940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:35 Heat of formation + Delta-G solvation = -108.768629 kcal Electronic energy + Delta-G solvation = -28117.189211 eV Core-core repulsion = 24105.974116 eV Total energy + Delta-G solvation = -4011.215095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60744 -39.59215 -38.05742 -37.10255 -35.70276 -32.42885 -32.15841 -31.74127 -30.92340 -28.82076 -27.95016 -27.11126 -25.49759 -25.06389 -23.21478 -22.78880 -21.14322 -19.67888 -19.00518 -17.75512 -17.65260 -16.94503 -16.91507 -16.77234 -16.37496 -15.62602 -15.43660 -14.90180 -14.79853 -14.44909 -14.26517 -14.01315 -13.78534 -13.57381 -13.29954 -13.11448 -13.04529 -12.85626 -12.78600 -12.66421 -12.50526 -12.40182 -12.12653 -11.82805 -11.69050 -11.64951 -11.30642 -11.04114 -11.03660 -10.98300 -10.80941 -10.75504 -10.12010 -9.93167 -9.82491 -9.39824 -9.11212 -9.05554 -8.39028 -8.24522 -6.50310 -6.21613 -3.92221 2.30301 2.37260 2.94732 3.03483 3.23885 3.26186 3.29377 3.46780 3.66414 4.20454 4.22010 4.43621 4.49022 4.57390 4.60042 4.73301 4.77495 4.82106 4.86664 4.91727 5.00783 5.10425 5.13604 5.14796 5.23646 5.26018 5.27070 5.44404 5.48913 5.49914 5.63168 5.67037 5.70592 5.72156 5.73940 5.82726 5.87997 5.97907 6.05233 6.15421 6.25682 6.51685 6.64522 7.09370 7.59506 7.67931 7.92396 8.35222 8.53249 9.23717 10.85771 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024899 B = 0.002030 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.287076 B =13793.000495 C =14312.370675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.046 3.954 5 C 0.514 3.486 6 O -0.514 6.514 7 N -0.609 5.609 8 C 0.073 3.927 9 C 0.105 3.895 10 C 0.128 3.872 11 H 0.074 0.926 12 C -0.131 4.131 13 C -0.132 4.132 14 C 0.101 3.899 15 N -0.620 5.620 16 C 0.550 3.450 17 O -0.517 6.517 18 C -0.148 4.148 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.773 -20.701 6.117 28.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.034 4.034 5 C 0.300 3.700 6 O -0.389 6.389 7 N -0.345 5.345 8 C -0.070 4.070 9 C -0.018 4.018 10 C 0.023 3.977 11 H 0.092 0.908 12 C -0.169 4.169 13 C -0.170 4.170 14 C -0.022 4.022 15 N -0.358 5.358 16 C 0.339 3.661 17 O -0.391 6.391 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.975 -21.245 5.231 28.316 hybrid contribution -0.399 1.803 0.703 1.976 sum -18.374 -19.442 5.934 27.401 Atomic orbital electron populations 1.21732 0.93320 1.02271 1.03530 1.22552 0.96058 0.83303 1.00181 1.88027 1.18470 1.26411 1.95413 1.22235 0.83936 0.94769 1.02423 1.20221 0.82321 0.90589 0.76820 1.90702 1.48831 1.51564 1.47809 1.47694 1.05444 1.07422 1.73925 1.21920 0.91868 0.90667 1.02538 1.21940 1.02510 0.80176 0.97210 1.21812 0.95610 0.84448 0.95827 0.90843 1.22830 0.97329 0.98114 0.98595 1.22765 1.00834 0.95514 0.97853 1.22310 0.91759 0.93837 0.94291 1.48563 1.22138 1.08611 1.56470 1.20052 0.78739 0.90752 0.76577 1.90681 1.47774 1.55648 1.45001 1.23529 1.06830 0.93826 1.05644 1.85337 1.15973 1.08753 1.73257 1.22824 1.09648 0.91792 1.44110 0.90974 1.24983 0.94724 0.99325 0.94490 1.70008 1.09027 1.35973 1.35317 0.86227 0.77651 0.83122 0.78522 1.19939 1.20805 1.19922 0.91640 0.90947 0.91656 0.93181 0.93180 0.90305 0.90279 0.92130 0.91061 0.90056 0.89239 0.88844 0.91003 0.88761 0.90779 0.89868 0.90257 0.91243 0.89327 0.89189 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.36 6.66 37.16 0.25 0.61 16 3 O -0.36 -3.76 9.88 -55.14 -0.54 -4.30 16 4 C 0.05 0.37 4.91 36.01 0.18 0.55 16 5 C 0.51 5.88 7.25 -10.98 -0.08 5.80 16 6 O -0.51 -7.86 14.01 -14.35 -0.20 -8.07 16 7 N -0.61 -6.40 2.78 -181.57 -0.51 -6.91 16 8 C 0.07 0.53 10.36 59.85 0.62 1.15 16 9 C 0.10 1.37 5.05 -4.04 -0.02 1.35 16 10 C 0.13 1.65 3.08 -66.95 -0.21 1.44 16 11 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 12 C -0.13 -1.43 5.75 -24.89 -0.14 -1.57 16 13 C -0.13 -1.27 7.09 -24.58 -0.17 -1.45 16 14 C 0.10 1.19 6.65 -2.53 -0.02 1.17 16 15 N -0.62 -9.21 3.06 -163.01 -0.50 -9.71 16 16 C 0.55 10.50 7.58 -10.99 -0.08 10.42 16 17 O -0.52 -11.43 15.05 5.55 0.08 -11.35 16 18 C -0.15 -3.05 5.25 36.01 0.19 -2.86 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 24 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.46 7.42 -51.93 -0.39 0.08 16 34 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.32 6.29 -51.93 -0.33 -0.01 16 37 H 0.08 0.65 8.00 -51.93 -0.42 0.23 16 38 H 0.09 1.30 7.14 -51.93 -0.37 0.92 16 39 H 0.09 1.40 6.74 -51.93 -0.35 1.05 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.19 5.80 -51.93 -0.30 0.89 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.70 7.77 -51.91 -0.40 1.30 16 47 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -36.46 402.92 -8.99 -45.45 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.98 Total: -1.52 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 1.09 Total: 3.14 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.27 Total: -42.02 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.66 Total: -23.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.46 -8.99 -45.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333524940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.319 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds