Wall clock time and date at job start Sat Apr 11 2020 07:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46946 * 2 1 4 4 C 1.42899 * 113.99751 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46969 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99977 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99701 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00354 * 0.02562 * 7 5 4 9 9 C 1.46504 * 119.99644 * 180.02562 * 7 5 4 10 10 C 1.52992 * 109.47089 * 95.33164 * 9 7 5 11 11 H 1.08995 * 110.00156 * 53.37149 * 10 9 7 12 12 C 1.54338 * 109.99202 * 292.33268 * 10 9 7 13 13 C 1.55154 * 103.02440 * 218.66381 * 12 10 9 14 14 C 1.54915 * 101.57876 * 35.30969 * 13 12 10 15 15 N 1.47022 * 109.88439 * 174.47053 * 10 9 7 16 16 C 1.34776 * 125.64736 * 298.39781 * 15 10 9 17 17 O 1.21285 * 119.99817 * 354.64394 * 16 15 10 18 18 C 1.50699 * 120.00555 * 174.64910 * 16 15 10 19 19 S 1.80998 * 109.47538 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99976 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00399 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00106 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99746 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00322 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47452 * 59.99636 * 24 22 20 26 26 H 1.48504 * 109.47536 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47049 * 299.99917 * 24 22 20 28 28 H 1.09004 * 109.47069 * 60.00280 * 1 2 3 29 29 H 1.09007 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47438 * 299.99871 * 1 2 3 31 31 H 1.08994 * 109.47119 * 239.99688 * 2 1 3 32 32 H 1.09004 * 109.47069 * 119.99720 * 2 1 3 33 33 H 1.09005 * 109.46783 * 59.99867 * 4 3 2 34 34 H 1.08994 * 109.47321 * 300.00230 * 4 3 2 35 35 H 1.09004 * 109.47109 * 265.66206 * 8 7 5 36 36 H 1.09002 * 109.46915 * 25.66085 * 8 7 5 37 37 H 1.08994 * 109.47142 * 145.66225 * 8 7 5 38 38 H 1.09004 * 109.47073 * 335.32689 * 9 7 5 39 39 H 1.08999 * 109.46910 * 215.33334 * 9 7 5 40 40 H 1.09006 * 110.84733 * 100.19766 * 12 10 9 41 41 H 1.08996 * 110.66653 * 337.05494 * 12 10 9 42 42 H 1.09000 * 111.00785 * 277.23781 * 13 12 10 43 43 H 1.09001 * 111.00445 * 153.37527 * 13 12 10 44 44 H 1.08997 * 110.36780 * 204.14835 * 14 13 12 45 45 H 1.09005 * 110.45871 * 81.87524 * 14 13 12 46 46 H 1.09006 * 109.47038 * 59.99535 * 18 16 15 47 47 H 1.09004 * 109.46840 * 300.00157 * 18 16 15 48 48 H 0.96998 * 119.99986 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 -0.0001 6 8 2.9610 3.7729 -0.0005 7 7 5.1209 3.2663 0.0008 8 6 6.1579 2.2315 0.0019 9 6 5.4986 4.6818 0.0007 10 6 5.7585 5.1404 1.4370 11 1 6.4822 4.4797 1.9141 12 6 4.4398 5.1366 2.2389 13 6 4.5625 6.4080 3.1196 14 6 5.3112 7.3744 2.1680 15 7 6.2653 6.5205 1.4373 16 6 7.4097 6.9372 0.8600 17 8 8.1663 6.1306 0.3621 18 6 7.7493 8.4052 0.8333 19 16 9.3367 8.6422 -0.0033 20 6 9.4813 10.3948 0.1056 21 1 8.7063 10.9717 0.5885 22 6 10.5910 11.0342 -0.4292 23 7 11.5358 10.3312 -1.0173 24 14 10.7447 12.8922 -0.3131 25 1 10.7489 13.3004 1.1147 26 1 12.0119 13.3253 -0.9550 27 1 9.5956 13.5282 -1.0063 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8339 0.9764 -0.8892 34 1 3.8332 0.9768 0.8907 35 1 6.4692 2.0301 1.0270 36 1 5.7610 1.3190 -0.4432 37 1 7.0149 2.5753 -0.5772 38 1 4.6903 5.2735 -0.4291 39 1 6.4028 4.8165 -0.5930 40 1 4.3656 4.2434 2.8593 41 1 3.5826 5.2120 1.5699 42 1 5.1507 6.2078 4.0151 43 1 3.5790 6.7997 3.3794 44 1 5.8433 8.1340 2.7406 45 1 4.6131 7.8430 1.4743 46 1 7.8173 8.7810 1.8543 47 1 6.9710 8.9484 0.2973 48 1 12.3116 10.7779 -1.3908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333524940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:34 Heat of formation + Delta-G solvation = -132.647444 kcal Electronic energy + Delta-G solvation = -28118.224674 eV Core-core repulsion = 24105.974116 eV Total energy + Delta-G solvation = -4012.250559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63711 -40.69802 -38.82731 -38.29791 -36.61956 -34.59402 -33.19505 -32.55849 -31.79272 -30.26767 -28.73065 -27.87615 -27.66307 -25.99792 -23.94926 -23.65894 -22.12433 -20.63739 -20.31493 -19.53557 -18.55627 -18.10685 -17.72139 -17.55730 -17.34539 -16.88764 -16.58374 -16.47704 -16.20071 -15.88000 -15.38098 -15.13543 -14.82123 -14.58614 -14.34179 -14.11550 -14.02784 -13.81499 -13.76110 -13.65478 -13.51868 -13.25124 -13.18110 -13.15095 -12.89531 -12.84314 -12.63955 -12.30989 -12.19147 -12.15484 -11.92491 -11.76275 -11.71177 -11.13661 -10.99407 -10.78519 -10.65228 -10.30536 -10.11165 -9.52279 -8.68003 -8.35457 -6.13686 1.19544 1.39241 1.43246 1.46644 1.52443 1.54585 1.65787 2.12795 2.26666 2.87609 2.98591 3.21295 3.43197 3.53657 3.59115 3.82006 3.91140 4.06164 4.11073 4.15327 4.17168 4.23065 4.25223 4.26896 4.33228 4.36731 4.43836 4.52327 4.56370 4.60849 4.68880 4.76729 4.82290 4.87908 4.89245 4.96906 5.02138 5.04459 5.15021 5.28251 5.34674 5.40682 5.43713 6.07348 6.18687 6.32374 6.36593 7.05341 7.05859 7.08835 8.73481 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024899 B = 0.002030 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.287076 B =13793.000495 C =14312.370675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.402 6.402 4 C 0.050 3.950 5 C 0.508 3.492 6 O -0.561 6.561 7 N -0.607 5.607 8 C 0.067 3.933 9 C 0.113 3.887 10 C 0.128 3.872 11 H 0.073 0.927 12 C -0.120 4.120 13 C -0.120 4.120 14 C 0.089 3.911 15 N -0.613 5.613 16 C 0.550 3.450 17 O -0.556 6.556 18 C -0.123 4.123 19 S -0.142 6.142 20 C -0.549 4.549 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.262 1.262 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.251 -21.310 7.793 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.321 6.321 4 C -0.029 4.029 5 C 0.297 3.703 6 O -0.439 6.439 7 N -0.341 5.341 8 C -0.074 4.074 9 C -0.011 4.011 10 C 0.023 3.977 11 H 0.091 0.909 12 C -0.158 4.158 13 C -0.157 4.157 14 C -0.032 4.032 15 N -0.348 5.348 16 C 0.338 3.662 17 O -0.434 6.434 18 C -0.274 4.274 19 S 0.085 5.915 20 C -0.697 4.697 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.546 5.546 24 Si 0.819 3.181 25 H -0.186 1.186 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.483 -21.891 6.935 30.115 hybrid contribution -0.043 1.880 0.196 1.891 sum -19.526 -20.011 7.131 28.855 Atomic orbital electron populations 1.21781 0.93430 1.03422 1.02370 1.22770 0.96084 0.81966 1.01785 1.87985 1.19615 1.28763 1.95771 1.22344 0.83473 0.92084 1.05044 1.20950 0.81773 0.91983 0.75604 1.90677 1.50060 1.53134 1.50030 1.47756 1.06237 1.06791 1.73350 1.22159 0.90821 0.90811 1.03624 1.21618 1.00459 0.82111 0.96936 1.21944 0.96590 0.83151 0.95965 0.90929 1.22718 0.95113 0.99619 0.98309 1.22770 1.01875 0.93877 0.97209 1.22643 0.91484 0.94314 0.94794 1.48514 1.21057 1.10234 1.54992 1.19736 0.79764 0.89755 0.76960 1.90663 1.49541 1.56163 1.47057 1.23336 1.02883 0.95547 1.05635 1.85475 1.21321 1.09600 1.75114 1.23168 1.10235 0.91942 1.44337 0.90061 1.26105 0.94105 1.05035 0.93717 1.70170 1.09756 1.38348 1.36346 0.85022 0.77969 0.75986 0.79135 1.18618 1.20257 1.18793 0.92935 0.88633 0.92681 0.91659 0.91335 0.87696 0.87188 0.90714 0.87615 0.91344 0.91171 0.91375 0.89490 0.90330 0.89671 0.87568 0.89314 0.90519 0.87565 0.87926 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.05 0.53 6.66 71.98 0.48 1.01 16 3 O -0.40 -7.68 9.88 -129.94 -1.28 -8.96 16 4 C 0.05 0.68 4.91 71.24 0.35 1.03 16 5 C 0.51 11.22 7.25 87.66 0.64 11.86 16 6 O -0.56 -17.38 14.01 16.02 0.22 -17.15 16 7 N -0.61 -12.46 2.78 -846.76 -2.36 -14.81 16 8 C 0.07 0.87 10.36 127.77 1.32 2.19 16 9 C 0.11 3.07 5.05 86.38 0.44 3.50 16 10 C 0.13 3.25 3.08 45.34 0.14 3.39 16 11 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 12 C -0.12 -2.43 5.75 31.79 0.18 -2.25 16 13 C -0.12 -1.99 7.09 31.99 0.23 -1.76 16 14 C 0.09 1.94 6.65 86.86 0.58 2.52 16 15 N -0.61 -17.94 3.06 -788.03 -2.41 -20.35 16 16 C 0.55 21.30 7.58 87.66 0.66 21.97 16 17 O -0.56 -25.60 15.05 -3.04 -0.05 -25.65 16 18 C -0.12 -5.09 5.25 71.24 0.37 -4.71 16 19 S -0.14 -7.96 20.57 -56.49 -1.16 -9.12 16 20 C -0.55 -31.62 9.50 67.95 0.65 -30.98 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.02 0.88 5.49 84.86 0.47 1.34 16 23 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 24 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.11 0.88 7.42 -2.38 -0.02 0.86 16 34 H 0.11 0.82 8.11 -2.39 -0.02 0.80 16 35 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.11 0.62 6.29 -2.39 -0.01 0.61 16 37 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 38 H 0.07 2.15 7.14 -2.39 -0.02 2.13 16 39 H 0.07 2.19 6.74 -2.39 -0.02 2.17 16 40 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.08 1.93 5.80 -2.39 -0.01 1.92 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.09 1.78 7.51 -2.39 -0.02 1.77 16 45 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.11 3.99 7.77 -2.39 -0.02 3.97 16 47 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -83.35 402.92 3.46 -79.89 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.94 Total: 17.74 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 7.24 Total: 8.25 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -4.48 Total: -90.81 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.10 Total: -51.76 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -83.35 3.46 -79.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333524940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.754 kcal (2) G-P(sol) polarization free energy of solvation -83.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds