Wall clock time and date at job start Sat Apr 11 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47191 * 2 1 4 4 C 1.42905 * 114.00074 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46610 * 329.99409 * 4 3 2 6 6 C 1.52997 * 109.47264 * 89.99687 * 4 3 2 7 7 C 1.50697 * 109.46996 * 210.00118 * 4 3 2 8 8 O 1.21285 * 120.00040 * 354.99689 * 7 4 3 9 9 N 1.34778 * 119.99902 * 174.99831 * 7 4 3 10 10 C 1.46505 * 119.99823 * 179.97438 * 9 7 4 11 11 C 1.52993 * 109.47015 * 179.97438 * 10 9 7 12 12 C 1.53774 * 113.61954 * 274.13778 * 11 10 9 13 13 C 1.53948 * 87.02420 * 220.04671 * 12 11 10 14 14 N 1.46493 * 113.54169 * 270.81214 * 13 12 11 15 15 C 1.34778 * 120.00018 * 252.49377 * 14 13 12 16 16 O 1.21278 * 120.00201 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99968 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47274 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00414 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99377 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00094 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00168 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99975 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46753 * 90.00453 * 23 21 19 25 25 H 1.48499 * 109.47265 * 210.00202 * 23 21 19 26 26 H 1.48502 * 109.47270 * 330.00318 * 23 21 19 27 27 C 1.53781 * 87.10983 * 25.36210 * 13 12 11 28 28 H 1.09000 * 109.47014 * 299.99934 * 1 2 3 29 29 H 1.08996 * 109.47076 * 60.00588 * 1 2 3 30 30 H 1.09005 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47542 * 239.99540 * 2 1 3 32 32 H 1.09003 * 109.47563 * 120.00137 * 2 1 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.46832 * 60.00108 * 6 4 3 35 35 H 1.09004 * 109.47261 * 300.00089 * 6 4 3 36 36 H 0.96996 * 120.00226 * 0.02562 * 9 7 4 37 37 H 1.09002 * 109.47222 * 300.00310 * 10 9 7 38 38 H 1.09002 * 109.46819 * 60.00042 * 10 9 7 39 39 H 1.09000 * 112.84797 * 45.33898 * 11 10 9 40 40 H 1.09001 * 113.61396 * 334.56960 * 12 11 10 41 41 H 1.09003 * 113.61713 * 105.46441 * 12 11 10 42 42 H 1.09004 * 113.74596 * 139.93499 * 13 12 11 43 43 H 0.96998 * 120.00169 * 72.48791 * 14 13 12 44 44 H 1.09007 * 109.47595 * 299.99893 * 17 15 14 45 45 H 1.09003 * 109.47378 * 60.00404 * 17 15 14 46 46 H 0.96996 * 120.00253 * 179.97438 * 22 21 19 47 47 H 1.08999 * 113.61786 * 220.08935 * 27 13 12 48 48 H 1.09000 * 113.61514 * 89.18574 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5005 -1.4433 7 6 3.8348 2.7263 0.7099 8 8 2.9864 3.5046 1.0913 9 7 5.1387 2.9937 0.9214 10 6 5.5313 4.2249 1.6115 11 6 7.0562 4.2838 1.7214 12 6 7.6142 3.5472 2.9505 13 6 8.6083 4.7134 3.0981 14 7 9.8545 4.5178 2.3532 15 6 10.9971 4.2407 3.0122 16 8 10.9935 4.1528 4.2218 17 6 12.2789 4.0389 2.2459 18 16 13.6244 3.6841 3.4034 19 6 14.9612 3.4972 2.2708 20 1 14.7900 3.6090 1.2104 21 6 16.2341 3.2063 2.7416 22 7 17.2328 3.0672 1.8955 23 14 16.5302 3.0137 4.5759 24 1 16.3325 1.5937 4.9627 25 1 17.9197 3.4260 4.8990 26 1 15.5736 3.8683 5.3242 27 6 7.5782 5.5828 2.3579 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 5.0253 1.5870 -1.4437 34 1 3.5060 2.3591 -1.9568 35 1 3.6466 0.5847 -1.9571 36 1 5.8172 2.3714 0.6160 37 1 5.1736 5.0870 1.0485 38 1 5.0947 4.2366 2.6102 39 1 7.5581 4.0216 0.7900 40 1 6.9042 3.4718 3.7740 41 1 8.0886 2.5955 2.7110 42 1 8.7760 5.0192 4.1308 43 1 9.8573 4.5876 1.3857 44 1 12.1626 3.2021 1.5570 45 1 12.5121 4.9429 1.6833 46 1 18.1225 2.8643 2.2245 47 1 8.0236 6.2722 1.6406 48 1 6.8583 6.0650 3.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333645145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:39 Heat of formation + Delta-G solvation = -109.992855 kcal Electronic energy + Delta-G solvation = -26632.632595 eV Core-core repulsion = 22621.364413 eV Total energy + Delta-G solvation = -4011.268182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65624 -40.04024 -38.48385 -37.96298 -35.04596 -33.32942 -32.73985 -32.47027 -30.70271 -29.55083 -27.87263 -26.05598 -25.65369 -24.87801 -23.26110 -22.71567 -21.15346 -20.73499 -19.46200 -17.99260 -17.74419 -17.53930 -16.59410 -16.34776 -16.22085 -15.92394 -15.70361 -15.17233 -15.01498 -14.90701 -14.63833 -14.26984 -13.97099 -13.74691 -13.55191 -13.39164 -13.15221 -12.98912 -12.82244 -12.79581 -12.74986 -12.48269 -12.42839 -11.96594 -11.85145 -11.57929 -11.38987 -11.29121 -11.03954 -10.92987 -10.70018 -10.55101 -10.38919 -9.89262 -9.85244 -9.59675 -9.47085 -9.06205 -9.01034 -8.54233 -6.95836 -6.32230 -4.04410 2.22438 2.39483 2.70153 2.87787 3.24628 3.30850 3.39210 3.47852 3.59773 4.10024 4.13588 4.26997 4.30032 4.37053 4.38527 4.45085 4.56792 4.59321 4.69796 4.72418 4.83118 4.86014 4.92497 5.06967 5.13326 5.19231 5.20737 5.24849 5.32431 5.39475 5.42235 5.42946 5.54821 5.66880 5.67199 5.69580 5.70933 5.75012 5.90507 5.96089 6.02716 6.55075 6.57307 7.06650 7.53815 7.82297 7.90704 8.37926 8.42444 9.13944 10.76961 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.001564 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.467739 B =17903.746077 C =18533.223752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.071 3.929 5 H 0.086 0.914 6 C -0.170 4.170 7 C 0.513 3.487 8 O -0.520 6.520 9 N -0.727 5.727 10 C 0.131 3.869 11 C -0.126 4.126 12 C -0.148 4.148 13 C 0.124 3.876 14 N -0.720 5.720 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.523 4.523 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.135 4.135 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.399 0.601 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.271 0.729 47 H 0.078 0.922 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.960 -3.350 -6.731 30.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.009 3.991 5 H 0.104 0.896 6 C -0.228 4.228 7 C 0.298 3.702 8 O -0.394 6.394 9 N -0.381 5.381 10 C 0.008 3.992 11 C -0.145 4.145 12 C -0.187 4.187 13 C 0.018 3.982 14 N -0.373 5.373 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.174 4.174 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.233 0.767 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -30.521 -2.789 -4.446 30.969 hybrid contribution 0.960 -0.643 -1.500 1.893 sum -29.561 -3.431 -5.946 30.348 Atomic orbital electron populations 1.21731 0.93303 1.02334 1.03464 1.22614 0.96081 0.83363 1.00184 1.88062 1.18198 1.26493 1.94940 1.21876 0.84005 0.96436 0.96787 0.89578 1.22236 1.01679 1.03945 0.94964 1.20402 0.82587 0.87720 0.79525 1.90736 1.50173 1.48739 1.49735 1.45934 1.07030 1.24557 1.60543 1.21402 0.93833 0.86418 0.97539 1.22884 0.94022 0.98433 0.99142 1.23571 0.98689 0.98833 0.97583 1.21748 0.83162 0.95776 0.97554 1.45666 1.07371 1.74134 1.10139 1.20310 0.84306 0.75268 0.88194 1.90703 1.85654 1.48692 1.14013 1.23283 0.95591 1.05534 1.03115 1.84810 1.01223 1.93115 1.12324 1.22312 0.93594 1.56032 0.95082 0.89396 1.24706 0.94780 0.93284 0.98465 1.69934 1.00773 1.46220 1.34712 0.86739 0.79290 0.80480 0.85365 1.19209 1.19902 1.15926 1.23297 0.98134 0.95958 1.00014 0.91621 0.91716 0.90916 0.93103 0.93155 0.90846 0.91007 0.91086 0.76443 0.91206 0.91060 0.88480 0.89041 0.90732 0.87770 0.76658 0.88503 0.88411 0.91915 0.90326 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.15 0.38 -0.43 16 2 C 0.05 0.33 6.47 37.15 0.24 0.57 16 3 O -0.36 -3.35 9.53 -55.09 -0.52 -3.88 16 4 C 0.07 0.49 3.13 -27.89 -0.09 0.41 16 5 H 0.09 0.40 7.79 -51.93 -0.40 0.00 16 6 C -0.17 -0.84 9.48 37.16 0.35 -0.49 16 7 C 0.51 4.82 7.18 -10.99 -0.08 4.75 16 8 O -0.52 -7.35 16.51 -14.31 -0.24 -7.59 16 9 N -0.73 -4.74 5.52 -60.29 -0.33 -5.08 16 10 C 0.13 0.90 5.50 -4.04 -0.02 0.88 16 11 C -0.13 -0.74 3.62 -89.81 -0.33 -1.06 16 12 C -0.15 -1.15 7.44 -25.83 -0.19 -1.34 16 13 C 0.12 1.19 4.33 -67.03 -0.29 0.90 16 14 N -0.72 -8.06 5.26 -52.94 -0.28 -8.34 16 15 C 0.53 8.85 7.85 -10.99 -0.09 8.76 16 16 O -0.52 -10.66 15.46 5.56 0.09 -10.58 16 17 C -0.12 -2.29 6.16 36.00 0.22 -2.06 16 18 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 19 C -0.52 -14.78 10.04 30.94 0.31 -14.47 16 20 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.19 13.97 55.49 0.78 -25.42 16 23 Si 0.86 21.47 27.74 -169.99 -4.71 16.76 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 27 C -0.14 -0.89 7.39 -25.92 -0.19 -1.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.23 7.87 -51.93 -0.41 -0.18 16 32 H 0.05 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.28 7.87 -51.93 -0.41 -0.13 16 36 H 0.40 1.61 8.25 -40.82 -0.34 1.27 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.69 7.92 -51.93 -0.41 0.27 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.24 7.47 -51.93 -0.39 0.85 16 43 H 0.40 3.33 8.70 -40.82 -0.36 2.97 16 44 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 45 H 0.10 1.67 8.14 -51.91 -0.42 1.24 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 413.45 15.07 6.23 6.23 Total: -1.00 -37.24 413.45 -9.03 -46.27 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.18 Total: -0.90 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 0.14 Total: -2.00 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.16 Total: -38.83 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.68 Total: -22.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.76 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -37.24 -9.03 -46.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333645145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.726 kcal (2) G-P(sol) polarization free energy of solvation -37.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds