Wall clock time and date at job start Sat Apr 11 2020 07:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47191 * 2 1 4 4 C 1.42905 * 114.00074 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46610 * 329.99409 * 4 3 2 6 6 C 1.52997 * 109.47264 * 89.99687 * 4 3 2 7 7 C 1.50697 * 109.46996 * 210.00118 * 4 3 2 8 8 O 1.21285 * 120.00040 * 354.99689 * 7 4 3 9 9 N 1.34778 * 119.99902 * 174.99831 * 7 4 3 10 10 C 1.46505 * 119.99823 * 179.97438 * 9 7 4 11 11 C 1.52993 * 109.47015 * 179.97438 * 10 9 7 12 12 C 1.53774 * 113.61954 * 274.13778 * 11 10 9 13 13 C 1.53948 * 87.02420 * 220.04671 * 12 11 10 14 14 N 1.46493 * 113.54169 * 270.81214 * 13 12 11 15 15 C 1.34778 * 120.00018 * 252.49377 * 14 13 12 16 16 O 1.21278 * 120.00201 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99968 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47274 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00414 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99377 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00094 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00168 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99975 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46753 * 90.00453 * 23 21 19 25 25 H 1.48499 * 109.47265 * 210.00202 * 23 21 19 26 26 H 1.48502 * 109.47270 * 330.00318 * 23 21 19 27 27 C 1.53781 * 87.10983 * 25.36210 * 13 12 11 28 28 H 1.09000 * 109.47014 * 299.99934 * 1 2 3 29 29 H 1.08996 * 109.47076 * 60.00588 * 1 2 3 30 30 H 1.09005 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47542 * 239.99540 * 2 1 3 32 32 H 1.09003 * 109.47563 * 120.00137 * 2 1 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.46832 * 60.00108 * 6 4 3 35 35 H 1.09004 * 109.47261 * 300.00089 * 6 4 3 36 36 H 0.96996 * 120.00226 * 0.02562 * 9 7 4 37 37 H 1.09002 * 109.47222 * 300.00310 * 10 9 7 38 38 H 1.09002 * 109.46819 * 60.00042 * 10 9 7 39 39 H 1.09000 * 112.84797 * 45.33898 * 11 10 9 40 40 H 1.09001 * 113.61396 * 334.56960 * 12 11 10 41 41 H 1.09003 * 113.61713 * 105.46441 * 12 11 10 42 42 H 1.09004 * 113.74596 * 139.93499 * 13 12 11 43 43 H 0.96998 * 120.00169 * 72.48791 * 14 13 12 44 44 H 1.09007 * 109.47595 * 299.99893 * 17 15 14 45 45 H 1.09003 * 109.47378 * 60.00404 * 17 15 14 46 46 H 0.96996 * 120.00253 * 179.97438 * 22 21 19 47 47 H 1.08999 * 113.61786 * 220.08935 * 27 13 12 48 48 H 1.09000 * 113.61514 * 89.18574 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5005 -1.4433 7 6 3.8348 2.7263 0.7099 8 8 2.9864 3.5046 1.0913 9 7 5.1387 2.9937 0.9214 10 6 5.5313 4.2249 1.6115 11 6 7.0562 4.2838 1.7214 12 6 7.6142 3.5472 2.9505 13 6 8.6083 4.7134 3.0981 14 7 9.8545 4.5178 2.3532 15 6 10.9971 4.2407 3.0122 16 8 10.9935 4.1528 4.2218 17 6 12.2789 4.0389 2.2459 18 16 13.6244 3.6841 3.4034 19 6 14.9612 3.4972 2.2708 20 1 14.7900 3.6090 1.2104 21 6 16.2341 3.2063 2.7416 22 7 17.2328 3.0672 1.8955 23 14 16.5302 3.0137 4.5759 24 1 16.3325 1.5937 4.9627 25 1 17.9197 3.4260 4.8990 26 1 15.5736 3.8683 5.3242 27 6 7.5782 5.5828 2.3579 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 5.0253 1.5870 -1.4437 34 1 3.5060 2.3591 -1.9568 35 1 3.6466 0.5847 -1.9571 36 1 5.8172 2.3714 0.6160 37 1 5.1736 5.0870 1.0485 38 1 5.0947 4.2366 2.6102 39 1 7.5581 4.0216 0.7900 40 1 6.9042 3.4718 3.7740 41 1 8.0886 2.5955 2.7110 42 1 8.7760 5.0192 4.1308 43 1 9.8573 4.5876 1.3857 44 1 12.1626 3.2021 1.5570 45 1 12.5121 4.9429 1.6833 46 1 18.1225 2.8643 2.2245 47 1 8.0236 6.2722 1.6406 48 1 6.8583 6.0650 3.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333645145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:38 Heat of formation + Delta-G solvation = -137.244005 kcal Electronic energy + Delta-G solvation = -26633.814294 eV Core-core repulsion = 22621.364413 eV Total energy + Delta-G solvation = -4012.449880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42776 -40.87757 -39.44319 -38.66070 -35.82923 -34.66778 -34.29306 -33.30157 -31.26444 -30.75895 -28.63080 -27.83135 -26.66126 -25.42003 -23.77531 -23.34186 -22.20511 -21.49911 -20.24137 -19.86200 -18.46638 -18.10536 -17.84913 -17.19657 -16.99246 -16.94021 -16.61990 -16.49745 -16.28943 -15.83039 -15.55202 -15.29066 -14.95550 -14.88799 -14.65917 -14.26532 -14.08962 -13.92502 -13.67275 -13.38590 -13.35404 -13.32604 -13.21053 -13.02162 -12.89167 -12.86452 -12.65606 -12.30497 -12.06846 -11.95589 -11.84223 -11.62665 -11.25591 -11.16355 -10.99637 -10.97025 -10.51932 -10.47026 -10.13422 -10.02915 -8.98428 -8.50843 -6.21393 1.00309 1.31845 1.47650 1.54130 1.56690 1.56829 1.85600 2.22035 2.26726 2.72990 2.87736 2.91449 3.50132 3.53187 3.74773 3.78831 3.85997 3.91991 3.93400 4.01743 4.18580 4.26386 4.30704 4.31310 4.47656 4.48866 4.56774 4.61442 4.68110 4.77942 4.82403 4.86357 4.88367 4.91136 5.00437 5.06941 5.13410 5.19144 5.23395 5.25603 5.42310 5.65382 5.71453 6.10923 6.12300 6.50294 6.53559 6.94764 7.20368 7.23169 8.61419 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.001564 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.467739 B =17903.746077 C =18533.223752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.394 6.394 4 C 0.068 3.932 5 H 0.113 0.887 6 C -0.165 4.165 7 C 0.508 3.492 8 O -0.577 6.577 9 N -0.711 5.711 10 C 0.133 3.867 11 C -0.105 4.105 12 C -0.143 4.143 13 C 0.108 3.892 14 N -0.693 5.693 15 C 0.538 3.462 16 O -0.563 6.563 17 C -0.111 4.111 18 S -0.178 6.178 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.237 1.237 27 C -0.123 4.123 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.417 0.583 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.418 0.582 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.277 0.723 47 H 0.090 0.910 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.848 -4.046 -7.484 32.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.007 3.993 5 H 0.130 0.870 6 C -0.223 4.223 7 C 0.294 3.706 8 O -0.455 6.455 9 N -0.365 5.365 10 C 0.009 3.991 11 C -0.124 4.124 12 C -0.182 4.182 13 C 0.002 3.998 14 N -0.346 5.346 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.262 4.262 18 S 0.048 5.952 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.158 4.158 22 N -0.555 5.555 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.185 1.185 26 H -0.161 1.161 27 C -0.161 4.161 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.255 0.745 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.086 0.914 47 H 0.109 0.891 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -31.406 -3.497 -5.260 32.035 hybrid contribution 1.107 -0.402 -1.354 1.794 sum -30.299 -3.900 -6.614 31.257 Atomic orbital electron populations 1.21770 0.93330 1.03404 1.02400 1.22809 0.96214 0.82321 1.01473 1.88028 1.19633 1.28467 1.95189 1.22054 0.83369 0.95852 0.97987 0.86967 1.22228 1.02837 1.03855 0.93335 1.20973 0.82748 0.88017 0.78851 1.90708 1.51795 1.50724 1.52314 1.45834 1.06651 1.24564 1.59422 1.21350 0.94324 0.86452 0.96947 1.22776 0.93181 0.97342 0.99083 1.23535 0.97992 0.97972 0.98686 1.21950 0.82906 0.98231 0.96705 1.45383 1.06361 1.71791 1.11043 1.19962 0.84959 0.75364 0.87391 1.90695 1.86300 1.51337 1.15796 1.23275 0.94017 1.07038 1.01870 1.84758 1.02739 1.93453 1.14242 1.22466 0.95105 1.55362 0.94681 0.91842 1.25534 0.94713 0.93114 1.02471 1.70011 1.01424 1.47404 1.36636 0.85887 0.79621 0.80524 0.80459 1.18711 1.18455 1.16140 1.23264 0.96854 0.96143 0.99864 0.93113 0.92340 0.88765 0.91193 0.92319 0.88679 0.92796 0.89705 0.74614 0.91639 0.92163 0.86504 0.88847 0.91114 0.90246 0.74485 0.86604 0.86770 0.91404 0.89129 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.05 0.51 6.47 71.98 0.47 0.98 16 3 O -0.39 -7.15 9.53 -129.99 -1.24 -8.39 16 4 C 0.07 0.84 3.13 29.85 0.09 0.94 16 5 H 0.11 0.75 7.79 -2.39 -0.02 0.73 16 6 C -0.16 -1.25 9.48 71.98 0.68 -0.56 16 7 C 0.51 9.07 7.18 87.66 0.63 9.69 16 8 O -0.58 -16.59 16.51 15.94 0.26 -16.33 16 9 N -0.71 -7.74 5.52 -463.05 -2.55 -10.29 16 10 C 0.13 1.55 5.50 86.38 0.47 2.03 16 11 C -0.11 -0.90 3.62 -10.27 -0.04 -0.93 16 12 C -0.14 -1.89 7.44 31.18 0.23 -1.66 16 13 C 0.11 1.86 4.33 45.58 0.20 2.05 16 14 N -0.69 -13.69 5.26 -439.78 -2.31 -16.00 16 15 C 0.54 16.96 7.85 87.66 0.69 17.65 16 16 O -0.56 -22.96 15.46 -3.02 -0.05 -23.01 16 17 C -0.11 -3.89 6.16 71.23 0.44 -3.45 16 18 S -0.18 -8.75 18.55 -56.49 -1.05 -9.80 16 19 C -0.53 -30.06 10.04 67.95 0.68 -29.38 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 21 C 0.05 2.72 5.50 84.86 0.47 3.19 16 22 N -0.92 -54.95 13.97 21.65 0.30 -54.65 16 23 Si 0.91 44.30 27.74 68.60 1.90 46.21 16 24 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.24 -11.52 6.74 99.48 0.67 -10.85 16 27 C -0.12 -1.26 7.39 31.12 0.23 -1.03 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.07 0.46 7.87 -2.39 -0.02 0.44 16 32 H 0.06 0.51 8.09 -2.39 -0.02 0.49 16 33 H 0.09 0.28 7.92 -2.39 -0.02 0.26 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.42 7.87 -2.38 -0.02 0.40 16 36 H 0.42 1.95 8.25 -92.71 -0.77 1.18 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.88 7.87 -2.39 -0.02 0.86 16 39 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.09 1.24 7.92 -2.39 -0.02 1.22 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.84 7.47 -2.38 -0.02 1.82 16 43 H 0.42 5.35 8.70 -92.71 -0.81 4.54 16 44 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 45 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 46 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.11 0.98 8.10 -2.39 -0.02 0.97 16 Total: -1.00 -83.81 413.45 0.61 -83.21 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -0.65 Total: 10.35 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.98 Total: -1.30 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -4.57 Total: -80.95 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -1.02 Total: -47.72 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Total: -83.81 0.61 -83.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333645145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.038 kcal (2) G-P(sol) polarization free energy of solvation -83.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds