Wall clock time and date at job start Sat Apr 11 2020 07:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47579 * 2 1 4 4 C 1.42895 * 113.99806 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47411 * 30.00391 * 4 3 2 6 6 C 1.53002 * 109.46985 * 270.00065 * 4 3 2 7 7 C 1.50706 * 109.46938 * 150.00503 * 4 3 2 8 8 O 1.21279 * 119.99617 * 4.99615 * 7 4 3 9 9 N 1.34771 * 119.99821 * 185.00123 * 7 4 3 10 10 C 1.46506 * 120.00015 * 179.97438 * 9 7 4 11 11 C 1.52992 * 109.47614 * 179.97438 * 10 9 7 12 12 C 1.53782 * 113.61696 * 274.13969 * 11 10 9 13 13 C 1.53947 * 87.01928 * 220.04596 * 12 11 10 14 14 N 1.46504 * 113.53633 * 270.80599 * 13 12 11 15 15 C 1.34776 * 119.99936 * 252.49438 * 14 13 12 16 16 O 1.21284 * 120.00300 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99613 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.46939 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00016 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00084 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00159 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99920 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00270 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46988 * 89.99931 * 23 21 19 25 25 H 1.48493 * 109.47137 * 210.00295 * 23 21 19 26 26 H 1.48504 * 109.46963 * 329.99992 * 23 21 19 27 27 C 1.53777 * 113.61760 * 176.52881 * 11 10 9 28 28 H 1.08998 * 109.46624 * 300.00288 * 1 2 3 29 29 H 1.09001 * 109.46846 * 59.99435 * 1 2 3 30 30 H 1.08997 * 109.47325 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46960 * 239.99580 * 2 1 3 32 32 H 1.09001 * 109.46846 * 120.00565 * 2 1 3 33 33 H 1.09004 * 109.47059 * 299.99932 * 6 4 3 34 34 H 1.08992 * 109.47060 * 60.00416 * 6 4 3 35 35 H 1.09004 * 109.46930 * 180.02562 * 6 4 3 36 36 H 0.96997 * 120.00771 * 359.97438 * 9 7 4 37 37 H 1.08995 * 109.46800 * 300.00083 * 10 9 7 38 38 H 1.09000 * 109.46729 * 59.99276 * 10 9 7 39 39 H 1.09009 * 112.84848 * 45.32884 * 11 10 9 40 40 H 1.09006 * 113.61288 * 334.56781 * 12 11 10 41 41 H 1.09007 * 113.61818 * 105.46302 * 12 11 10 42 42 H 1.09002 * 113.74327 * 139.94607 * 13 12 11 43 43 H 0.96996 * 120.00080 * 72.49802 * 14 13 12 44 44 H 1.09003 * 109.47135 * 299.99984 * 17 15 14 45 45 H 1.08995 * 109.47238 * 60.00453 * 17 15 14 46 46 H 0.97004 * 120.00283 * 180.02562 * 22 21 19 47 47 H 1.08996 * 113.61731 * 254.52892 * 27 11 10 48 48 H 1.08991 * 113.61276 * 25.43243 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.8632 0.6015 -0.5148 6 6 3.9399 1.4999 1.4417 7 6 3.8344 2.7264 -0.7109 8 8 2.9858 3.5048 -1.0913 9 7 5.1381 2.9937 -0.9234 10 6 5.5303 4.2246 -1.6144 11 6 7.0551 4.2842 -1.7242 12 6 7.7386 4.8911 -0.4875 13 6 8.6901 5.6062 -1.4639 14 7 9.8816 4.8226 -1.7991 15 6 11.0830 5.1763 -1.3011 16 8 11.1776 6.1431 -0.5750 17 6 12.3087 4.3705 -1.6465 18 16 13.7544 5.0914 -0.8302 19 6 15.0059 3.9852 -1.3914 20 1 14.7480 3.1642 -2.0438 21 6 16.3233 4.1691 -0.9949 22 7 16.6377 5.1695 -0.1992 23 14 17.6500 2.9960 -1.5891 24 1 18.2234 3.5013 -2.8623 25 1 18.7222 2.9021 -0.5661 26 1 17.0589 1.6519 -1.8114 27 6 7.5690 5.5014 -2.5112 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5078 2.3584 1.9559 34 1 3.6482 0.5840 1.9555 35 1 5.0266 1.5863 1.4413 36 1 5.8168 2.3713 -0.6189 37 1 5.0930 4.2358 -2.6127 38 1 5.1728 5.0869 -1.0515 39 1 7.4936 3.3395 -2.0458 40 1 7.0989 5.5708 0.0754 41 1 8.2333 4.1532 0.1442 42 1 8.9247 6.6312 -1.1765 43 1 9.8059 4.0492 -2.3796 44 1 12.1754 3.3430 -1.3078 45 1 12.4579 4.3807 -2.7262 46 1 17.5584 5.2982 0.0776 47 1 7.9270 5.2556 -3.5109 48 1 6.8828 6.3482 -2.5026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333645146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:41 Heat of formation + Delta-G solvation = -137.699457 kcal Electronic energy + Delta-G solvation = -26598.959755 eV Core-core repulsion = 22586.490125 eV Total energy + Delta-G solvation = -4012.469630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41246 -40.86236 -39.41702 -38.65599 -35.82189 -34.57724 -34.26821 -33.29662 -31.24637 -30.70137 -28.62158 -27.63749 -26.66212 -25.41656 -23.76383 -23.32996 -22.16388 -21.49669 -20.21477 -19.81174 -18.46484 -18.10400 -17.79477 -17.10414 -16.99376 -16.86628 -16.52116 -16.42513 -16.19063 -16.04297 -15.59252 -15.32486 -14.78641 -14.66934 -14.52115 -14.24157 -14.16805 -13.83681 -13.57800 -13.41004 -13.34152 -13.21158 -13.15275 -12.90517 -12.89018 -12.84078 -12.60434 -12.30272 -12.06509 -11.95264 -11.71658 -11.61832 -11.25148 -11.13252 -10.97517 -10.92946 -10.46831 -10.25561 -10.12966 -10.00643 -8.65359 -8.33617 -6.11574 1.28279 1.43419 1.48558 1.54212 1.58414 1.62009 1.86134 2.26080 2.30494 2.91840 3.00825 3.33465 3.50473 3.52892 3.75714 3.80794 3.88925 3.92027 4.00651 4.01426 4.19188 4.30290 4.32090 4.33564 4.48340 4.53010 4.58204 4.59298 4.68948 4.77394 4.82488 4.86747 4.88399 4.91875 5.00967 5.07297 5.13740 5.18724 5.24220 5.26162 5.42740 5.43067 5.67106 6.11666 6.20842 6.53902 6.54782 7.07947 7.20684 7.28888 8.75533 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.001543 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.645560 B =18136.581797 C =19041.045314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.394 6.394 4 C 0.070 3.930 5 H 0.116 0.884 6 C -0.166 4.166 7 C 0.508 3.492 8 O -0.577 6.577 9 N -0.711 5.711 10 C 0.133 3.867 11 C -0.104 4.104 12 C -0.144 4.144 13 C 0.106 3.894 14 N -0.693 5.693 15 C 0.536 3.464 16 O -0.566 6.566 17 C -0.129 4.129 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.257 1.257 27 C -0.122 4.122 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.417 0.583 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.417 0.583 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.271 0.729 47 H 0.091 0.909 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.727 -14.083 -3.408 32.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.009 3.991 5 H 0.134 0.866 6 C -0.224 4.224 7 C 0.294 3.706 8 O -0.455 6.455 9 N -0.365 5.365 10 C 0.009 3.991 11 C -0.122 4.122 12 C -0.182 4.182 13 C 0.000 4.000 14 N -0.346 5.346 15 C 0.322 3.678 16 O -0.444 6.444 17 C -0.280 4.280 18 S 0.073 5.927 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.181 1.181 27 C -0.160 4.160 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.254 0.746 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.255 0.745 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -29.194 -11.679 -2.393 31.535 hybrid contribution 1.219 -1.877 -0.937 2.426 sum -27.975 -13.557 -3.329 31.265 Atomic orbital electron populations 1.21772 0.93375 1.03407 1.02371 1.22815 0.96183 0.82293 1.01527 1.88031 1.19613 1.28532 1.95174 1.22039 0.83375 0.95924 0.97761 0.86615 1.22233 1.02735 1.03793 0.93627 1.20980 0.82732 0.88061 0.78835 1.90706 1.51771 1.50734 1.52326 1.45832 1.06661 1.24471 1.59496 1.21344 0.94294 0.86378 0.97040 1.22764 0.92720 0.99861 0.96861 1.23536 0.97702 1.00254 0.96728 1.21950 0.84214 0.95657 0.98145 1.45387 1.05251 1.32624 1.51376 1.20082 0.84728 0.83911 0.79098 1.90699 1.86269 1.29486 1.37976 1.23372 0.95676 1.03393 1.05586 1.85620 0.99256 1.42260 1.65551 1.23214 0.94711 1.15873 1.35589 0.89799 1.26114 1.00653 0.97687 0.94621 1.70187 1.20009 1.30853 1.33793 0.84964 0.76788 0.78303 0.77995 1.19397 1.20423 1.18067 1.23254 0.95774 0.98698 0.98310 0.92485 0.93059 0.88717 0.92078 0.91287 0.93044 0.89610 0.88892 0.74615 0.91519 0.92243 0.86435 0.88934 0.91169 0.90601 0.74526 0.86984 0.87166 0.92037 0.89065 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.50 6.47 71.98 0.47 0.97 16 3 O -0.39 -7.20 9.53 -129.99 -1.24 -8.44 16 4 C 0.07 0.88 3.13 29.85 0.09 0.97 16 5 H 0.12 0.70 7.79 -2.39 -0.02 0.68 16 6 C -0.17 -1.46 9.48 71.98 0.68 -0.78 16 7 C 0.51 9.24 7.18 87.66 0.63 9.87 16 8 O -0.58 -16.79 16.51 15.97 0.26 -16.53 16 9 N -0.71 -8.08 5.52 -463.07 -2.55 -10.63 16 10 C 0.13 1.64 5.50 86.38 0.47 2.12 16 11 C -0.10 -0.98 3.62 -10.27 -0.04 -1.02 16 12 C -0.14 -2.12 7.44 31.18 0.23 -1.88 16 13 C 0.11 2.03 4.33 45.57 0.20 2.23 16 14 N -0.69 -15.05 5.26 -439.75 -2.31 -17.36 16 15 C 0.54 18.48 7.85 87.66 0.69 19.17 16 16 O -0.57 -25.41 15.46 -3.04 -0.05 -25.45 16 17 C -0.13 -4.81 6.16 71.24 0.44 -4.37 16 18 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 19 C -0.55 -30.50 9.50 67.95 0.65 -29.85 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -55.41 13.22 21.65 0.29 -55.13 16 23 Si 1.00 42.69 29.55 68.60 2.03 44.71 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 27 C -0.12 -1.39 7.39 31.12 0.23 -1.16 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.48 8.08 -2.38 -0.02 0.46 16 32 H 0.07 0.45 7.87 -2.39 -0.02 0.44 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 0.51 7.87 -2.39 -0.02 0.49 16 35 H 0.09 0.43 7.92 -2.38 -0.02 0.41 16 36 H 0.42 2.14 8.25 -92.71 -0.77 1.38 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.92 7.87 -2.39 -0.02 0.90 16 39 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.09 1.38 7.92 -2.38 -0.02 1.36 16 41 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.08 1.94 7.46 -2.39 -0.02 1.93 16 43 H 0.42 5.91 8.70 -92.71 -0.81 5.10 16 44 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 45 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 46 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.11 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -86.83 416.14 0.60 -86.23 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.61 Total: 15.41 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.95 Total: -3.29 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -4.58 Total: -83.12 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -1.02 Total: -50.42 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -86.83 0.60 -86.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333645146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.470 kcal (2) G-P(sol) polarization free energy of solvation -86.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds