Wall clock time and date at job start Sat Apr 11 2020 07:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47123 * 2 1 4 4 C 1.42902 * 113.99584 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47184 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47415 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00062 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99908 * 180.02562 * 6 5 4 9 9 C 1.47425 * 125.64911 * 0.04308 * 8 6 5 10 10 C 1.54912 * 104.83476 * 155.83741 * 9 8 6 11 11 C 1.55154 * 101.58113 * 37.00492 * 10 9 8 12 12 H 1.09000 * 110.72506 * 82.86442 * 11 10 9 13 13 N 1.46503 * 110.72190 * 206.14084 * 11 10 9 14 14 C 1.34783 * 119.99568 * 268.52311 * 13 11 10 15 15 O 1.21281 * 119.99815 * 359.97438 * 14 13 11 16 16 C 1.50698 * 119.99662 * 179.97438 * 14 13 11 17 17 S 1.80997 * 109.46907 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00221 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99517 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00422 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00036 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99674 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47114 * 89.99741 * 22 20 18 24 24 H 1.48507 * 109.46662 * 209.99873 * 22 20 18 25 25 H 1.48498 * 109.47236 * 329.99453 * 22 20 18 26 26 C 1.47022 * 125.64810 * 179.97438 * 8 6 5 27 27 H 1.09002 * 109.88254 * 300.51377 * 26 8 6 28 28 C 1.53005 * 109.87895 * 61.52501 * 26 8 6 29 29 H 1.08998 * 109.47645 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47292 * 300.00507 * 1 2 3 31 31 H 1.08997 * 109.46972 * 59.99882 * 1 2 3 32 32 H 1.08995 * 109.46940 * 239.99504 * 2 1 3 33 33 H 1.09009 * 109.46512 * 120.00178 * 2 1 3 34 34 H 1.08998 * 109.47295 * 60.00160 * 4 3 2 35 35 H 1.08995 * 109.47310 * 299.99987 * 4 3 2 36 36 H 1.09006 * 109.47072 * 59.99913 * 5 4 3 37 37 H 1.09005 * 109.47034 * 300.00259 * 5 4 3 38 38 H 1.09000 * 110.36364 * 274.67033 * 9 8 6 39 39 H 1.09000 * 110.36962 * 36.99584 * 9 8 6 40 40 H 1.08991 * 111.00746 * 155.08349 * 10 9 8 41 41 H 1.09003 * 111.00242 * 278.93313 * 10 9 8 42 42 H 0.96993 * 120.00371 * 88.52539 * 13 11 10 43 43 H 1.08999 * 109.47452 * 299.99868 * 16 14 13 44 44 H 1.08996 * 109.47067 * 60.00114 * 16 14 13 45 45 H 0.97001 * 119.99597 * 180.02562 * 21 20 18 46 46 H 1.08991 * 109.47360 * 58.28396 * 28 26 8 47 47 H 1.09006 * 109.46753 * 178.28482 * 28 26 8 48 48 H 1.09004 * 109.46911 * 298.28130 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9382 -0.0001 6 6 5.3278 3.0572 -0.0001 7 8 6.0152 2.0580 0.0008 8 7 5.9074 4.2739 -0.0002 9 6 5.1954 5.5648 0.0007 10 6 6.2007 6.5718 0.6132 11 6 7.5452 6.0648 0.0279 12 1 7.6983 6.4529 -0.9791 13 7 8.6623 6.4320 0.9018 14 6 9.3205 7.5913 0.7030 15 8 8.9882 8.3301 -0.1996 16 6 10.4691 7.9693 1.6022 17 16 11.1408 9.5679 1.0832 18 6 12.4291 9.7584 2.2701 19 1 12.5923 8.9956 3.0169 20 6 13.2348 10.8883 2.2445 21 7 14.1976 11.0303 3.1309 22 14 12.9529 12.2074 0.9522 23 1 11.9888 13.2106 1.4710 24 1 14.2414 12.8755 0.6376 25 1 12.4046 11.5846 -0.2794 26 6 7.3545 4.5336 0.0003 27 1 7.8110 4.0871 0.8837 28 6 7.9883 3.9500 -1.2641 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.8340 0.9763 -0.8891 35 1 3.8333 0.9766 0.8908 36 1 3.4223 3.4223 0.8894 37 1 3.4231 3.4213 -0.8906 38 1 4.9387 5.8571 -1.0175 39 1 4.2980 5.5027 0.6162 40 1 5.9880 7.5876 0.2805 41 1 6.2006 6.5108 1.7016 42 1 8.9282 5.8409 1.6234 43 1 10.1171 8.0396 2.6314 44 1 11.2479 7.2096 1.5357 45 1 14.7604 11.8201 3.1132 46 1 7.5188 4.3917 -2.1430 47 1 9.0554 4.1728 -1.2717 48 1 7.8425 2.8699 -1.2783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337904859.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:51 Heat of formation + Delta-G solvation = -125.864910 kcal Electronic energy + Delta-G solvation = -27167.052958 eV Core-core repulsion = 23155.096513 eV Total energy + Delta-G solvation = -4011.956446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87329 -39.45692 -38.47607 -37.65256 -34.34342 -33.09240 -32.46525 -31.78105 -31.38509 -30.34486 -29.00124 -25.76928 -25.50786 -24.65082 -23.24365 -22.77978 -21.38843 -20.68393 -19.22156 -17.93723 -17.85392 -17.17827 -16.83068 -16.57038 -16.16018 -15.97763 -15.50402 -15.10868 -14.99719 -14.74234 -14.64602 -14.12221 -14.02215 -13.74220 -13.52858 -13.38772 -13.06728 -12.84239 -12.82169 -12.75577 -12.54818 -12.33277 -12.22885 -12.14074 -11.87612 -11.57208 -11.50923 -11.45556 -11.29308 -11.10905 -11.03343 -10.64352 -10.21585 -10.05855 -9.88828 -9.63233 -9.17088 -9.05463 -9.01664 -8.54298 -6.95408 -6.31393 -4.03702 2.21299 2.28078 2.73370 2.84733 3.20140 3.30110 3.32949 3.47850 3.60439 3.97253 4.16650 4.30465 4.34921 4.51424 4.55782 4.59138 4.67329 4.70725 4.75759 4.79804 4.82974 4.91231 4.96079 5.03435 5.07761 5.16088 5.19237 5.23788 5.31452 5.31967 5.36212 5.42571 5.45351 5.64252 5.64734 5.68489 5.71680 5.79708 5.93528 5.96769 5.99918 6.41736 6.71095 7.05889 7.47364 7.73264 7.91564 8.37156 8.39315 9.14655 10.77845 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.038366 B = 0.001613 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.645686 B =17356.312687 C =17504.832370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.078 3.922 5 C -0.135 4.135 6 C 0.536 3.464 7 O -0.538 6.538 8 N -0.613 5.613 9 C 0.098 3.902 10 C -0.147 4.147 11 C 0.141 3.859 12 H 0.109 0.891 13 N -0.728 5.728 14 C 0.535 3.465 15 O -0.516 6.516 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.523 4.523 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.130 3.870 27 H 0.082 0.918 28 C -0.162 4.162 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.401 0.599 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.412 -19.985 -6.116 32.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.001 3.999 5 C -0.175 4.175 6 C 0.325 3.675 7 O -0.415 6.415 8 N -0.348 5.348 9 C -0.025 4.025 10 C -0.186 4.186 11 C 0.034 3.966 12 H 0.127 0.873 13 N -0.382 5.382 14 C 0.321 3.679 15 O -0.390 6.390 16 C -0.276 4.276 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.027 3.973 27 H 0.100 0.900 28 C -0.220 4.220 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.236 0.764 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.589 -19.095 -7.554 32.810 hybrid contribution 0.794 -0.594 1.120 1.496 sum -24.795 -19.689 -6.434 32.309 Atomic orbital electron populations 1.21753 0.93606 1.02351 1.03179 1.22459 0.95560 0.83421 1.00337 1.87803 1.21003 1.26923 1.95594 1.22097 0.80811 0.95171 1.01803 1.21448 0.91989 0.98309 1.05748 1.20043 0.89957 0.81628 0.75901 1.90722 1.65295 1.35563 1.49964 1.48488 1.07117 1.05736 1.73473 1.22426 0.96064 0.82333 1.01665 1.23264 0.94056 0.99704 1.01604 1.21928 0.86185 0.92116 0.96363 0.87267 1.45908 1.34319 1.22974 1.35014 1.20307 0.82669 0.80220 0.84671 1.90702 1.66289 1.50118 1.31895 1.23284 0.98226 1.04186 1.01868 1.84780 1.41168 1.20005 1.45454 1.22313 1.17089 1.10595 1.17033 0.89373 1.24708 0.93665 0.97370 0.95493 1.69938 1.18432 1.28841 1.34407 0.86739 0.78719 0.82688 0.83721 1.19201 1.19912 1.15935 1.21721 0.80979 0.94684 0.99954 0.90000 1.22132 1.01068 1.02447 0.96361 0.91017 0.91805 0.91809 0.93257 0.93248 0.92383 0.92370 0.87946 0.87932 0.90555 0.89910 0.88745 0.89908 0.76388 0.88390 0.88334 0.91915 0.92215 0.91126 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.34 16 2 C 0.06 0.36 6.66 37.16 0.25 0.61 16 3 O -0.39 -3.25 10.34 -35.23 -0.36 -3.61 16 4 C 0.08 0.61 5.23 37.16 0.19 0.81 16 5 C -0.14 -0.92 5.08 -27.88 -0.14 -1.06 16 6 C 0.54 5.05 7.64 -10.99 -0.08 4.97 16 7 O -0.54 -6.88 15.02 5.56 0.08 -6.80 16 8 N -0.61 -5.15 3.07 -163.01 -0.50 -5.65 16 9 C 0.10 0.62 6.69 -2.53 -0.02 0.60 16 10 C -0.15 -1.19 6.77 -24.58 -0.17 -1.36 16 11 C 0.14 1.40 2.85 -66.09 -0.19 1.21 16 12 H 0.11 1.26 7.27 -51.93 -0.38 0.88 16 13 N -0.73 -8.28 5.18 -52.03 -0.27 -8.55 16 14 C 0.54 8.71 7.85 -10.98 -0.09 8.63 16 15 O -0.52 -10.26 15.51 5.56 0.09 -10.17 16 16 C -0.13 -2.29 6.16 36.00 0.22 -2.07 16 17 S -0.14 -3.45 18.55 -107.50 -1.99 -5.45 16 18 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 19 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.28 13.97 55.49 0.78 -25.51 16 22 Si 0.86 21.46 27.74 -169.99 -4.72 16.74 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 26 C 0.13 1.20 3.20 -66.95 -0.21 0.99 16 27 H 0.08 0.78 7.72 -51.93 -0.40 0.38 16 28 C -0.16 -1.57 9.11 37.16 0.34 -1.23 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.10 0.57 7.85 -51.93 -0.41 0.16 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.37 7.47 -51.93 -0.39 -0.02 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.40 3.60 8.37 -40.82 -0.34 3.26 16 43 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.79 6.88 -51.93 -0.36 0.44 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -35.02 407.30 -8.24 -43.27 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.19 Total: -0.34 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 0.70 Total: -0.07 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.01 Total: -39.71 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.19 Total: -20.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.72 Total: 16.74 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.02 -8.24 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337904859.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.600 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds