Wall clock time and date at job start Sat Apr 11 2020 07:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47375 * 2 1 4 4 C 1.42902 * 114.00027 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47165 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00162 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99729 * 180.02562 * 6 5 4 9 9 C 1.47419 * 125.65139 * 0.02562 * 8 6 5 10 10 C 1.54905 * 104.92834 * 155.80015 * 9 8 6 11 11 C 1.55448 * 101.45165 * 37.00468 * 10 9 8 12 12 H 1.08997 * 110.70436 * 82.89324 * 11 10 9 13 13 N 1.46506 * 110.86006 * 206.07316 * 11 10 9 14 14 C 1.34772 * 119.99966 * 268.63708 * 13 11 10 15 15 O 1.21280 * 120.00256 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99818 * 180.02562 * 14 13 11 17 17 S 1.80998 * 109.46850 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99711 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99959 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00026 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99685 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00017 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47365 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47272 * 119.99958 * 22 20 18 25 25 H 1.48502 * 109.47001 * 240.00007 * 22 20 18 26 26 C 1.47026 * 125.64285 * 180.02562 * 8 6 5 27 27 H 1.08997 * 109.88244 * 61.50329 * 26 8 6 28 28 C 1.52996 * 109.88081 * 300.49145 * 26 8 6 29 29 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46723 * 300.00142 * 1 2 3 31 31 H 1.08995 * 109.47150 * 59.99662 * 1 2 3 32 32 H 1.09001 * 109.46723 * 239.99858 * 2 1 3 33 33 H 1.09005 * 109.47094 * 120.00208 * 2 1 3 34 34 H 1.09004 * 109.47327 * 59.99687 * 4 3 2 35 35 H 1.09007 * 109.47132 * 300.00037 * 4 3 2 36 36 H 1.08998 * 109.47591 * 59.99952 * 5 4 3 37 37 H 1.09005 * 109.47141 * 299.99443 * 5 4 3 38 38 H 1.09002 * 110.36926 * 274.69484 * 9 8 6 39 39 H 1.08995 * 110.36556 * 36.90768 * 9 8 6 40 40 H 1.09002 * 111.00852 * 155.13877 * 10 9 8 41 41 H 1.09004 * 111.00578 * 278.99532 * 10 9 8 42 42 H 0.97004 * 119.99762 * 88.63859 * 13 11 10 43 43 H 1.08999 * 109.46796 * 299.99823 * 16 14 13 44 44 H 1.08999 * 109.47248 * 59.99737 * 16 14 13 45 45 H 0.97006 * 119.99736 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.47259 * 61.45996 * 28 26 8 47 47 H 1.09002 * 109.46915 * 181.45767 * 28 26 8 48 48 H 1.08994 * 109.47308 * 301.45787 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9382 0.0001 6 6 5.3278 3.0571 0.0001 7 8 6.0153 2.0580 0.0001 8 7 5.9075 4.2739 0.0012 9 6 5.1955 5.5648 0.0030 10 6 6.1986 6.5729 0.6172 11 6 7.5453 6.0647 0.0303 12 1 7.6982 6.4536 -0.9763 13 7 8.6651 6.4311 0.9010 14 6 9.3226 7.5905 0.7014 15 8 8.9875 8.3304 -0.1993 16 6 10.4749 7.9671 1.5967 17 16 11.1445 9.5665 1.0775 18 6 12.4375 9.7551 2.2596 19 1 12.6037 8.9911 3.0047 20 6 13.2432 10.8850 2.2326 21 7 13.0417 11.8154 1.3235 22 14 14.6144 11.0845 3.4853 23 1 14.6323 9.9080 4.3913 24 1 15.9176 11.1872 2.7807 25 1 14.3830 12.3173 4.2803 26 6 7.3546 4.5336 0.0008 27 1 7.8054 4.1187 -0.9006 28 6 7.9962 3.9055 1.2397 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8334 0.9765 -0.8908 35 1 3.8341 0.9763 0.8892 36 1 3.4232 3.4213 0.8905 37 1 3.4224 3.4223 -0.8895 38 1 4.9386 5.8578 -1.0150 39 1 4.2972 5.5017 0.6170 40 1 5.9841 7.5888 0.2855 41 1 6.1982 6.5106 1.7055 42 1 8.9334 5.8391 1.6212 43 1 10.1268 8.0358 2.6273 44 1 11.2533 7.2074 1.5260 45 1 13.6046 12.6052 1.3048 46 1 7.8463 2.8260 1.2188 47 1 9.0641 4.1240 1.2460 48 1 7.5354 4.3190 2.1367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337904861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:57 Heat of formation + Delta-G solvation = -119.434829 kcal Electronic energy + Delta-G solvation = -27209.808503 eV Core-core repulsion = 23198.130886 eV Total energy + Delta-G solvation = -4011.677617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89239 -39.39412 -38.43327 -37.60493 -34.38702 -33.01050 -32.45243 -31.56393 -31.33553 -30.27068 -28.76285 -26.00456 -25.48096 -24.59880 -23.23135 -22.87097 -21.31604 -20.06886 -19.28954 -18.08551 -17.78162 -17.00307 -16.70454 -16.59066 -16.30386 -15.82189 -15.53449 -14.98694 -14.83200 -14.81459 -14.66710 -14.04267 -13.98128 -13.80888 -13.46511 -13.28796 -12.95862 -12.80384 -12.72967 -12.61679 -12.44632 -12.37490 -12.18506 -12.09859 -11.84319 -11.55779 -11.48603 -11.24719 -11.08901 -11.06474 -11.03095 -10.77681 -10.16118 -10.04320 -9.83230 -9.49054 -9.11621 -9.08576 -8.96712 -8.26861 -6.52976 -6.24379 -3.95019 2.24526 2.33742 2.98762 2.98870 3.20005 3.25198 3.28593 3.32611 3.66049 4.02446 4.17934 4.22742 4.37577 4.53442 4.57935 4.61005 4.72625 4.78736 4.81790 4.91599 4.92581 4.97291 5.05021 5.09608 5.11259 5.18840 5.23298 5.27909 5.33802 5.36575 5.42566 5.46226 5.59522 5.65463 5.67018 5.75420 5.83301 5.84796 5.88608 6.08263 6.09808 6.52199 6.72687 7.09664 7.57350 7.59753 7.76383 8.33005 8.51853 9.21404 10.83102 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.039369 B = 0.001580 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.055040 B =17722.856624 C =18036.849588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.078 3.922 5 C -0.135 4.135 6 C 0.536 3.464 7 O -0.539 6.539 8 N -0.613 5.613 9 C 0.098 3.902 10 C -0.145 4.145 11 C 0.141 3.859 12 H 0.108 0.892 13 N -0.731 5.731 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.130 3.870 27 H 0.085 0.915 28 C -0.172 4.172 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.402 0.598 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.547 -21.430 -1.169 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.001 3.999 5 C -0.175 4.175 6 C 0.325 3.675 7 O -0.416 6.416 8 N -0.348 5.348 9 C -0.026 4.026 10 C -0.184 4.184 11 C 0.034 3.966 12 H 0.126 0.874 13 N -0.388 5.388 14 C 0.321 3.679 15 O -0.388 6.388 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.026 3.974 27 H 0.103 0.897 28 C -0.230 4.230 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.239 0.761 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.826 -20.475 -2.749 30.787 hybrid contribution 1.548 -1.099 2.196 2.903 sum -21.278 -21.575 -0.553 30.307 Atomic orbital electron populations 1.21751 0.93613 1.02340 1.03183 1.22458 0.95556 0.83436 1.00323 1.87804 1.21021 1.26906 1.95591 1.22098 0.80790 0.95197 1.01783 1.21448 0.92035 0.98273 1.05747 1.20035 0.89937 0.81636 0.75904 1.90716 1.65288 1.35594 1.50045 1.48504 1.07134 1.05732 1.73384 1.22419 0.96034 0.82404 1.01696 1.23299 0.94004 0.99646 1.01490 1.21869 0.86294 0.92058 0.96384 0.87444 1.46205 1.34153 1.23059 1.35421 1.20359 0.82768 0.80163 0.84647 1.90701 1.66250 1.50030 1.31864 1.23539 0.98226 1.06982 1.01748 1.85391 1.39148 1.14649 1.44045 1.22911 1.18323 1.09029 1.18133 0.90860 1.24987 0.97496 0.94800 0.96246 1.70027 1.38455 1.08871 1.32916 0.86120 0.80750 0.78256 0.80390 1.19610 1.20550 1.20559 1.21690 0.80894 0.94810 0.99974 0.89690 1.22162 1.00867 1.02909 0.97061 0.91028 0.91810 0.91799 0.93260 0.93267 0.92375 0.92404 0.87971 0.87921 0.90486 0.90006 0.88705 0.90038 0.76064 0.89160 0.89142 0.92217 0.90416 0.90897 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.06 0.37 6.66 37.16 0.25 0.62 16 3 O -0.39 -3.31 10.34 -35.23 -0.36 -3.67 16 4 C 0.08 0.63 5.23 37.15 0.19 0.82 16 5 C -0.14 -0.95 5.08 -27.88 -0.14 -1.09 16 6 C 0.54 5.17 7.63 -10.98 -0.08 5.09 16 7 O -0.54 -6.97 14.87 5.56 0.08 -6.88 16 8 N -0.61 -5.34 3.08 -163.02 -0.50 -5.84 16 9 C 0.10 0.65 6.68 -2.53 -0.02 0.63 16 10 C -0.15 -1.26 6.80 -24.43 -0.17 -1.43 16 11 C 0.14 1.49 3.19 -65.93 -0.21 1.28 16 12 H 0.11 1.31 7.55 -51.93 -0.39 0.92 16 13 N -0.73 -8.98 4.91 -51.88 -0.25 -9.23 16 14 C 0.53 9.31 7.85 -10.99 -0.09 9.22 16 15 O -0.51 -10.92 15.51 5.56 0.09 -10.83 16 16 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 22 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.13 1.25 3.48 -66.95 -0.23 1.02 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 C -0.17 -1.59 7.93 37.16 0.29 -1.29 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 35 H 0.06 0.49 8.10 -51.93 -0.42 0.06 16 36 H 0.10 0.59 7.84 -51.93 -0.41 0.19 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.40 7.47 -51.93 -0.39 0.01 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.40 4.04 5.87 -40.82 -0.24 3.80 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.08 0.84 6.74 -51.93 -0.35 0.49 16 47 H 0.07 0.62 6.81 -51.93 -0.35 0.27 16 48 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 LS Contribution 405.63 15.07 6.11 6.11 Total: -1.00 -35.25 405.63 -8.75 -44.00 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.00 Total: 0.06 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 0.60 Total: -0.99 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.02 Total: -40.18 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.20 Total: -21.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.25 -8.75 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337904861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.438 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds