Wall clock time and date at job start Sat Apr 11 2020 07:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47026 * 2 1 4 4 C 1.42895 * 113.99918 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47599 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99670 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00534 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00272 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.91386 * 328.90214 * 9 8 6 11 11 C 1.55157 * 111.00680 * 204.99847 * 9 8 6 12 12 C 1.54321 * 103.10033 * 277.51720 * 11 9 8 13 13 H 1.09001 * 109.88480 * 97.13771 * 12 11 9 14 14 C 1.53002 * 109.88295 * 218.14054 * 12 11 9 15 15 N 1.47019 * 107.27531 * 337.71659 * 12 11 9 16 16 C 1.34777 * 125.65068 * 178.90607 * 15 12 11 17 17 O 1.21277 * 119.99926 * 359.97438 * 16 15 12 18 18 C 1.50704 * 119.99914 * 180.02562 * 16 15 12 19 19 S 1.81003 * 109.46742 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99571 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00533 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00133 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99725 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00494 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47238 * 89.99399 * 24 22 20 26 26 H 1.48497 * 109.46928 * 209.99855 * 24 22 20 27 27 H 1.48507 * 109.46700 * 329.99411 * 24 22 20 28 28 C 1.47431 * 108.70142 * 358.94050 * 15 12 11 29 29 H 1.09002 * 109.47502 * 299.99874 * 1 2 3 30 30 H 1.09003 * 109.47251 * 59.99877 * 1 2 3 31 31 H 1.09002 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46990 * 240.00238 * 2 1 3 33 33 H 1.09003 * 109.47251 * 120.00123 * 2 1 3 34 34 H 1.09000 * 109.47405 * 60.00528 * 4 3 2 35 35 H 1.09001 * 109.47519 * 299.99781 * 4 3 2 36 36 H 1.09002 * 109.47226 * 59.99747 * 5 4 3 37 37 H 1.09007 * 109.46958 * 300.00143 * 5 4 3 38 38 H 0.97001 * 119.99350 * 359.97438 * 8 6 5 39 39 H 1.09002 * 110.72219 * 159.06416 * 11 9 8 40 40 H 1.09003 * 110.71618 * 35.97029 * 11 9 8 41 41 H 1.09003 * 109.46658 * 60.00367 * 14 12 11 42 42 H 1.09001 * 109.47565 * 179.97438 * 14 12 11 43 43 H 1.08993 * 109.47396 * 300.00635 * 14 12 11 44 44 H 1.09001 * 109.46884 * 299.99653 * 18 16 15 45 45 H 1.08994 * 109.47114 * 59.99465 * 18 16 15 46 46 H 0.96999 * 120.00248 * 180.02562 * 23 22 20 47 47 H 1.08999 * 110.36190 * 142.96411 * 28 15 12 48 48 H 1.08998 * 110.36491 * 265.18090 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3276 3.0575 -0.0011 7 8 6.0151 2.0583 -0.0020 8 7 5.9072 4.2742 -0.0003 9 6 7.3676 4.3899 -0.0009 10 1 7.8246 3.5510 0.5240 11 6 7.8186 5.7419 0.6123 12 6 7.6819 6.7249 -0.5695 13 1 6.7300 7.2521 -0.5050 14 6 8.8353 7.7299 -0.5465 15 7 7.7309 5.9309 -1.8058 16 6 7.6233 6.4188 -3.0576 17 8 7.4712 7.6091 -3.2334 18 6 7.6909 5.4851 -4.2386 19 16 7.5172 6.4352 -5.7694 20 6 7.6300 5.1336 -6.9517 21 1 7.7667 4.1144 -6.6215 22 6 7.5443 5.4182 -8.3075 23 7 7.3783 6.6604 -8.7100 24 14 7.6646 4.0384 -9.5610 25 1 6.3077 3.5040 -9.8407 26 1 8.2594 4.5614 -10.8171 27 1 8.5226 2.9530 -9.0215 28 6 7.9164 4.5124 -1.4495 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8332 0.9768 -0.8908 35 1 3.8340 0.9765 0.8892 36 1 3.4229 3.4214 0.8906 37 1 3.4221 3.4225 -0.8894 38 1 5.3573 5.0733 0.0008 39 1 8.8536 5.6862 0.9497 40 1 7.1620 6.0314 1.4327 41 1 9.7828 7.1974 -0.6295 42 1 8.7325 8.4203 -1.3838 43 1 8.8128 8.2876 0.3896 44 1 8.6507 4.9686 -4.2389 45 1 6.8851 4.7543 -4.1706 46 1 7.3180 6.8593 -9.6575 47 1 7.3475 3.8740 -2.1255 48 1 8.9736 4.2488 -1.4796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338034391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:10 Heat of formation + Delta-G solvation = -127.265779 kcal Electronic energy + Delta-G solvation = -27746.066640 eV Core-core repulsion = 23734.049448 eV Total energy + Delta-G solvation = -4012.017192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.67473 -39.52613 -38.23999 -37.34857 -34.30424 -32.86923 -32.42977 -32.20636 -30.93604 -29.72340 -28.71660 -26.04010 -25.48608 -24.43154 -23.10696 -22.57384 -21.23459 -20.61497 -18.98334 -17.83909 -17.64345 -17.14016 -16.77872 -16.49582 -16.23220 -15.59113 -15.46030 -14.87052 -14.79908 -14.59210 -14.41692 -14.08014 -13.94515 -13.79306 -13.60200 -13.08255 -12.84971 -12.71845 -12.59457 -12.54584 -12.37833 -12.20279 -12.04807 -11.91134 -11.67022 -11.43299 -11.42193 -11.36950 -11.06143 -11.02243 -10.91965 -10.75846 -10.19942 -9.92211 -9.82046 -9.58069 -9.31328 -9.06616 -8.51811 -8.24401 -6.50746 -6.21872 -3.92517 2.30115 2.62048 2.87265 3.04631 3.22651 3.26063 3.30622 3.49614 3.59628 4.11043 4.20603 4.25551 4.41430 4.64090 4.67340 4.71234 4.73631 4.91206 4.93583 5.03766 5.04713 5.13235 5.14594 5.16283 5.25159 5.32382 5.38197 5.45745 5.47722 5.48546 5.51078 5.57794 5.58499 5.63595 5.64147 5.77581 5.88090 5.98027 6.13317 6.15698 6.23534 6.49794 6.85214 7.13341 7.59627 7.63888 7.87298 8.35343 8.54569 9.23604 10.85554 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007119 B = 0.002916 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.352442 B = 9598.681616 C =12745.790710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.078 3.922 5 C -0.141 4.141 6 C 0.522 3.478 7 O -0.540 6.540 8 N -0.717 5.717 9 C 0.131 3.869 10 H 0.114 0.886 11 C -0.134 4.134 12 C 0.134 3.866 13 H 0.074 0.926 14 C -0.163 4.163 15 N -0.622 5.622 16 C 0.551 3.449 17 O -0.513 6.513 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.090 3.910 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.404 0.596 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.268 0.732 47 H 0.082 0.918 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -8.753 24.409 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.001 3.999 5 C -0.181 4.181 6 C 0.309 3.691 7 O -0.417 6.417 8 N -0.369 5.369 9 C 0.025 3.975 10 H 0.132 0.868 11 C -0.173 4.173 12 C 0.030 3.970 13 H 0.092 0.908 14 C -0.221 4.221 15 N -0.360 5.360 16 C 0.339 3.661 17 O -0.387 6.387 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.035 4.035 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.239 0.761 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.027 -7.382 23.896 25.726 hybrid contribution 0.209 -2.103 -0.690 2.223 sum -5.818 -9.485 23.206 25.736 Atomic orbital electron populations 1.21753 0.93655 1.02301 1.03196 1.22455 0.95544 0.83466 1.00307 1.87809 1.21017 1.26869 1.95585 1.22087 0.80841 0.95154 1.01771 1.21480 0.92141 0.98523 1.05981 1.20423 0.90224 0.83144 0.75292 1.90731 1.65336 1.36308 1.49328 1.45872 1.07143 1.08471 1.75416 1.22172 0.80536 0.98997 0.95749 0.86850 1.23086 1.03419 0.93393 0.97391 1.21493 0.99613 0.92414 0.83468 0.90812 1.22137 0.97640 0.99528 1.02819 1.48600 1.74681 1.07661 1.05024 1.19986 0.75215 0.88929 0.81925 1.90694 1.47511 1.16153 1.84322 1.23518 1.04736 1.02426 0.99097 1.85357 1.95249 1.11334 0.91371 1.22856 1.57906 0.94618 0.92893 0.90976 1.24990 0.94533 0.96370 0.97663 1.70018 1.46263 1.17892 1.16140 0.86170 0.78478 0.81003 0.79883 1.20246 1.20734 1.19672 1.22809 1.01308 0.83321 0.96033 0.91887 0.91709 0.91064 0.93166 0.93359 0.92252 0.92504 0.87936 0.87618 0.76090 0.88745 0.89387 0.92473 0.90719 0.91986 0.89396 0.89517 0.92186 0.89990 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.39 -3.91 10.34 -35.23 -0.36 -4.28 16 4 C 0.08 0.73 5.23 37.16 0.19 0.93 16 5 C -0.14 -1.13 6.07 -27.88 -0.17 -1.30 16 6 C 0.52 5.13 7.83 -10.99 -0.09 5.04 16 7 O -0.54 -7.14 15.62 5.55 0.09 -7.05 16 8 N -0.72 -5.87 5.19 -51.48 -0.27 -6.13 16 9 C 0.13 1.10 3.46 -65.52 -0.23 0.88 16 10 H 0.11 0.96 7.54 -51.93 -0.39 0.57 16 11 C -0.13 -0.92 6.06 -24.90 -0.15 -1.07 16 12 C 0.13 1.41 3.44 -66.95 -0.23 1.18 16 13 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.16 -1.80 9.10 37.16 0.34 -1.46 16 15 N -0.62 -8.45 3.07 -162.71 -0.50 -8.95 16 16 C 0.55 10.38 7.66 -10.98 -0.08 10.29 16 17 O -0.51 -11.47 14.92 5.56 0.08 -11.38 16 18 C -0.15 -3.06 5.16 36.01 0.19 -2.87 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.09 1.00 6.40 -2.26 -0.01 0.98 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 2.67 8.67 -40.82 -0.35 2.32 16 39 H 0.09 0.55 7.85 -51.93 -0.41 0.14 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 45 H 0.09 1.71 7.85 -51.92 -0.41 1.30 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 47 H 0.08 1.03 7.47 -51.93 -0.39 0.64 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 410.62 15.07 6.19 6.19 Total: -1.00 -36.26 410.62 -8.88 -45.14 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.19 Total: -0.39 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 0.58 Total: -0.34 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.03 Total: -40.63 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.19 Total: -22.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.26 -8.88 -45.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338034391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.123 kcal (2) G-P(sol) polarization free energy of solvation -36.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds