Wall clock time and date at job start Sat Apr 11 2020 07:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47026 * 2 1 4 4 C 1.42895 * 113.99918 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47599 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99670 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00534 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00272 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.91386 * 328.90214 * 9 8 6 11 11 C 1.55157 * 111.00680 * 204.99847 * 9 8 6 12 12 C 1.54321 * 103.10033 * 277.51720 * 11 9 8 13 13 H 1.09001 * 109.88480 * 97.13771 * 12 11 9 14 14 C 1.53002 * 109.88295 * 218.14054 * 12 11 9 15 15 N 1.47019 * 107.27531 * 337.71659 * 12 11 9 16 16 C 1.34777 * 125.65068 * 178.90607 * 15 12 11 17 17 O 1.21277 * 119.99926 * 359.97438 * 16 15 12 18 18 C 1.50704 * 119.99914 * 180.02562 * 16 15 12 19 19 S 1.81003 * 109.46742 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99571 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00533 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00133 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99725 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00494 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47238 * 89.99399 * 24 22 20 26 26 H 1.48497 * 109.46928 * 209.99855 * 24 22 20 27 27 H 1.48507 * 109.46700 * 329.99411 * 24 22 20 28 28 C 1.47431 * 108.70142 * 358.94050 * 15 12 11 29 29 H 1.09002 * 109.47502 * 299.99874 * 1 2 3 30 30 H 1.09003 * 109.47251 * 59.99877 * 1 2 3 31 31 H 1.09002 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46990 * 240.00238 * 2 1 3 33 33 H 1.09003 * 109.47251 * 120.00123 * 2 1 3 34 34 H 1.09000 * 109.47405 * 60.00528 * 4 3 2 35 35 H 1.09001 * 109.47519 * 299.99781 * 4 3 2 36 36 H 1.09002 * 109.47226 * 59.99747 * 5 4 3 37 37 H 1.09007 * 109.46958 * 300.00143 * 5 4 3 38 38 H 0.97001 * 119.99350 * 359.97438 * 8 6 5 39 39 H 1.09002 * 110.72219 * 159.06416 * 11 9 8 40 40 H 1.09003 * 110.71618 * 35.97029 * 11 9 8 41 41 H 1.09003 * 109.46658 * 60.00367 * 14 12 11 42 42 H 1.09001 * 109.47565 * 179.97438 * 14 12 11 43 43 H 1.08993 * 109.47396 * 300.00635 * 14 12 11 44 44 H 1.09001 * 109.46884 * 299.99653 * 18 16 15 45 45 H 1.08994 * 109.47114 * 59.99465 * 18 16 15 46 46 H 0.96999 * 120.00248 * 180.02562 * 23 22 20 47 47 H 1.08999 * 110.36190 * 142.96411 * 28 15 12 48 48 H 1.08998 * 110.36491 * 265.18090 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3276 3.0575 -0.0011 7 8 6.0151 2.0583 -0.0020 8 7 5.9072 4.2742 -0.0003 9 6 7.3676 4.3899 -0.0009 10 1 7.8246 3.5510 0.5240 11 6 7.8186 5.7419 0.6123 12 6 7.6819 6.7249 -0.5695 13 1 6.7300 7.2521 -0.5050 14 6 8.8353 7.7299 -0.5465 15 7 7.7309 5.9309 -1.8058 16 6 7.6233 6.4188 -3.0576 17 8 7.4712 7.6091 -3.2334 18 6 7.6909 5.4851 -4.2386 19 16 7.5172 6.4352 -5.7694 20 6 7.6300 5.1336 -6.9517 21 1 7.7667 4.1144 -6.6215 22 6 7.5443 5.4182 -8.3075 23 7 7.3783 6.6604 -8.7100 24 14 7.6646 4.0384 -9.5610 25 1 6.3077 3.5040 -9.8407 26 1 8.2594 4.5614 -10.8171 27 1 8.5226 2.9530 -9.0215 28 6 7.9164 4.5124 -1.4495 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8332 0.9768 -0.8908 35 1 3.8340 0.9765 0.8892 36 1 3.4229 3.4214 0.8906 37 1 3.4221 3.4225 -0.8894 38 1 5.3573 5.0733 0.0008 39 1 8.8536 5.6862 0.9497 40 1 7.1620 6.0314 1.4327 41 1 9.7828 7.1974 -0.6295 42 1 8.7325 8.4203 -1.3838 43 1 8.8128 8.2876 0.3896 44 1 8.6507 4.9686 -4.2389 45 1 6.8851 4.7543 -4.1706 46 1 7.3180 6.8593 -9.6575 47 1 7.3475 3.8740 -2.1255 48 1 8.9736 4.2488 -1.4796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338034391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:09 Heat of formation + Delta-G solvation = -153.163996 kcal Electronic energy + Delta-G solvation = -27747.189671 eV Core-core repulsion = 23734.049448 eV Total energy + Delta-G solvation = -4013.140223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61415 -40.56133 -39.02201 -38.48632 -35.19145 -34.62007 -33.53895 -33.33400 -31.63826 -30.54597 -30.16846 -27.69913 -26.90193 -25.19203 -23.69465 -23.62142 -22.01756 -21.37867 -20.37226 -19.49286 -18.53980 -18.24031 -17.63921 -17.45376 -17.02229 -16.91339 -16.69226 -16.37630 -16.21350 -15.75500 -15.38372 -15.15005 -14.97776 -14.67235 -14.64349 -14.36875 -14.11925 -13.85520 -13.61206 -13.25870 -13.22127 -13.19909 -13.09105 -12.95731 -12.91487 -12.71791 -12.62064 -12.42437 -12.25380 -12.04652 -12.01823 -11.76830 -11.74925 -11.17557 -11.01407 -10.92905 -10.61729 -10.34218 -10.29083 -9.64969 -8.71048 -8.38105 -6.16622 1.21055 1.39655 1.41837 1.52937 1.53423 1.56120 1.94323 2.05554 2.24075 2.84905 2.95817 3.18202 3.41579 3.45216 3.72646 3.83817 3.95576 4.02122 4.08176 4.15655 4.16427 4.17297 4.33877 4.36531 4.40120 4.41731 4.46918 4.49541 4.59630 4.68818 4.74437 4.79631 4.80965 4.88672 4.91123 4.94294 5.03151 5.11192 5.26928 5.30067 5.37821 5.46209 5.49898 6.16120 6.18223 6.34794 6.45220 7.03029 7.12002 7.15318 8.71142 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007119 B = 0.002916 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.352442 B = 9598.681616 C =12745.790710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.079 3.921 5 C -0.136 4.136 6 C 0.523 3.477 7 O -0.577 6.577 8 N -0.709 5.709 9 C 0.138 3.862 10 H 0.123 0.877 11 C -0.113 4.113 12 C 0.125 3.875 13 H 0.073 0.927 14 C -0.159 4.159 15 N -0.609 5.609 16 C 0.550 3.450 17 O -0.557 6.557 18 C -0.122 4.122 19 S -0.142 6.142 20 C -0.548 4.548 21 H 0.078 0.922 22 C 0.015 3.985 23 N -0.909 5.909 24 Si 0.998 3.002 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.260 1.260 28 C 0.081 3.919 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.414 0.586 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.272 0.728 47 H 0.065 0.935 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 -10.431 26.640 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.327 6.327 4 C 0.002 3.998 5 C -0.175 4.175 6 C 0.311 3.689 7 O -0.456 6.456 8 N -0.361 5.361 9 C 0.032 3.968 10 H 0.140 0.860 11 C -0.151 4.151 12 C 0.023 3.977 13 H 0.091 0.909 14 C -0.217 4.217 15 N -0.344 5.344 16 C 0.338 3.662 17 O -0.435 6.435 18 C -0.274 4.274 19 S 0.085 5.915 20 C -0.696 4.696 21 H 0.096 0.904 22 C -0.190 4.190 23 N -0.546 5.546 24 Si 0.819 3.181 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.184 1.184 28 C -0.043 4.043 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.250 0.750 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.052 -9.065 26.186 28.364 hybrid contribution 0.217 -1.600 -1.256 2.046 sum -5.835 -10.665 24.930 27.736 Atomic orbital electron populations 1.21768 0.92620 1.03422 1.02833 1.22661 0.96463 0.82751 1.00794 1.87790 1.21153 1.28151 1.95626 1.22060 0.80700 0.96020 1.01026 1.21461 0.90964 0.97863 1.07243 1.20686 0.90762 0.82985 0.74462 1.90718 1.66189 1.37554 1.51164 1.45853 1.07326 1.08451 1.74461 1.22160 0.80507 1.00351 0.93765 0.85952 1.23065 1.05450 0.90539 0.96046 1.21823 0.99535 0.93161 0.83186 0.90887 1.22098 0.97877 0.99102 1.02663 1.48484 1.72159 1.09453 1.04296 1.19573 0.75670 0.87840 0.83149 1.90680 1.50059 1.17582 1.85203 1.23319 1.05607 1.01864 0.96566 1.85471 1.95614 1.14548 0.95841 1.23164 1.58137 0.94733 0.93579 0.90396 1.26112 0.93676 0.99235 0.99939 1.70172 1.47190 1.20388 1.16809 0.84969 0.78982 0.77431 0.76708 1.19210 1.19987 1.18413 1.23080 1.02329 0.81200 0.97672 0.91791 0.92472 0.89246 0.93245 0.92333 0.93850 0.92455 0.85514 0.87366 0.74953 0.86670 0.86402 0.92154 0.94915 0.88878 0.88285 0.88551 0.91876 0.91611 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.41 -7.77 10.34 -148.98 -1.54 -9.31 16 4 C 0.08 1.42 5.23 71.98 0.38 1.80 16 5 C -0.14 -1.95 6.07 29.85 0.18 -1.77 16 6 C 0.52 9.36 7.83 87.66 0.69 10.05 16 7 O -0.58 -14.57 15.62 -3.05 -0.05 -14.62 16 8 N -0.71 -9.76 5.19 -435.17 -2.26 -12.02 16 9 C 0.14 1.89 3.46 46.55 0.16 2.05 16 10 H 0.12 1.64 7.54 -2.39 -0.02 1.62 16 11 C -0.11 -1.06 6.06 31.78 0.19 -0.87 16 12 C 0.13 2.36 3.44 45.34 0.16 2.51 16 13 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 14 C -0.16 -3.25 9.10 71.98 0.66 -2.60 16 15 N -0.61 -15.87 3.07 -787.09 -2.42 -18.29 16 16 C 0.55 21.00 7.66 87.66 0.67 21.68 16 17 O -0.56 -25.87 14.92 -3.02 -0.05 -25.92 16 18 C -0.12 -5.17 5.16 71.24 0.37 -4.80 16 19 S -0.14 -8.06 20.57 -56.49 -1.16 -9.22 16 20 C -0.55 -32.09 9.50 67.95 0.65 -31.44 16 21 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 22 C 0.02 0.89 5.49 84.86 0.47 1.35 16 23 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 24 Si 1.00 44.37 29.55 68.60 2.03 46.40 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 28 C 0.08 1.64 6.40 87.02 0.56 2.20 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.41 4.26 8.67 -92.71 -0.80 3.46 16 39 H 0.11 0.74 7.85 -2.39 -0.02 0.72 16 40 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.03 0.95 6.91 -2.39 -0.02 0.94 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 45 H 0.10 3.84 7.85 -2.40 -0.02 3.82 16 46 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 47 H 0.07 1.58 7.47 -2.39 -0.02 1.56 16 48 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -82.76 410.62 1.32 -81.44 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.14 Total: 17.25 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 6.34 Total: 0.36 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -4.39 Total: -86.38 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -1.63 Total: -49.85 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -82.76 1.32 -81.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338034391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.723 kcal (2) G-P(sol) polarization free energy of solvation -82.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds