Wall clock time and date at job start Sat Apr 11 2020 07:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47269 * 2 1 4 4 C 1.34775 * 120.00259 * 275.46890 * 3 2 1 5 5 O 1.21286 * 119.99907 * 4.67366 * 4 3 2 6 6 C 1.50701 * 120.00406 * 184.67139 * 4 3 2 7 7 H 1.09003 * 109.86915 * 306.45673 * 6 4 3 8 8 C 1.54100 * 109.87754 * 67.45806 * 6 4 3 9 9 C 1.54814 * 104.18462 * 121.45575 * 8 6 4 10 10 C 1.54995 * 102.09291 * 20.88118 * 9 8 6 11 11 O 1.43740 * 109.87989 * 185.44824 * 6 4 3 12 12 C 1.46499 * 119.99896 * 95.46997 * 3 2 1 13 13 H 1.09003 * 109.47364 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47621 * 59.99876 * 12 3 2 15 15 C 1.53004 * 109.46993 * 300.00025 * 12 3 2 16 16 N 1.46503 * 109.47219 * 304.99892 * 15 12 3 17 17 C 1.34776 * 120.00311 * 179.97438 * 16 15 12 18 18 O 1.21278 * 119.99779 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00194 * 180.02562 * 17 16 15 20 20 S 1.80994 * 109.47071 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00093 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99990 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00259 * 179.72053 * 21 20 19 24 24 N 1.31628 * 120.00016 * 0.28097 * 23 21 20 25 25 Si 1.86800 * 120.00302 * 180.27237 * 23 21 20 26 26 H 1.48504 * 109.47153 * 89.99977 * 25 23 21 27 27 H 1.48494 * 109.47228 * 210.00294 * 25 23 21 28 28 H 1.48506 * 109.46813 * 330.00425 * 25 23 21 29 29 H 1.09004 * 109.46957 * 293.24717 * 1 2 3 30 30 H 1.09004 * 109.47286 * 53.24185 * 1 2 3 31 31 H 1.08995 * 109.47334 * 173.24671 * 1 2 3 32 32 H 1.09001 * 109.47059 * 240.00072 * 2 1 3 33 33 H 1.09001 * 109.47773 * 119.99893 * 2 1 3 34 34 H 1.08999 * 110.49165 * 240.13202 * 8 6 4 35 35 H 1.09005 * 110.48859 * 2.65262 * 8 6 4 36 36 H 1.08993 * 110.90917 * 139.07977 * 9 8 6 37 37 H 1.09007 * 110.91047 * 262.68394 * 9 8 6 38 38 H 1.09002 * 110.61509 * 81.47351 * 10 9 8 39 39 H 1.09002 * 110.62119 * 204.47338 * 10 9 8 40 40 H 1.09002 * 109.46792 * 300.00542 * 14 12 3 41 41 H 1.09000 * 109.46646 * 60.00224 * 14 12 3 42 42 H 1.08996 * 109.47167 * 180.02562 * 14 12 3 43 43 H 1.09000 * 109.47151 * 185.00324 * 15 12 3 44 44 H 1.08991 * 109.47131 * 65.00183 * 15 12 3 45 45 H 0.97003 * 119.99748 * 0.02562 * 16 15 12 46 46 H 1.09000 * 109.46964 * 60.00305 * 19 17 16 47 47 H 1.09005 * 109.47024 * 300.00308 * 19 17 16 48 48 H 0.97002 * 120.00280 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1381 2.0537 -1.1618 5 8 1.7624 1.5465 -2.1976 6 6 2.7388 3.4357 -1.1742 7 1 2.2153 4.0736 -0.4619 8 6 4.2341 3.3604 -0.8094 9 6 4.9544 3.9803 -2.0316 10 6 3.8234 4.8132 -2.6870 11 8 2.6454 3.9975 -2.4940 12 6 2.3765 2.0315 1.2630 13 1 2.7154 3.0483 1.0648 14 6 3.4978 1.2430 1.9426 15 6 1.1529 2.0720 2.1807 16 7 0.0409 2.7228 1.4834 17 6 -1.1476 2.8712 2.1014 18 8 -1.2964 2.4664 3.2350 19 6 -2.2917 3.5400 1.3840 20 16 -3.7390 3.5881 2.4697 21 6 -4.8906 4.3961 1.4088 22 1 -4.5918 4.6946 0.4148 23 6 -6.1835 4.6445 1.8485 24 7 -6.5477 4.2813 3.0602 25 14 -7.4066 5.4943 0.7211 26 1 -8.1384 4.4751 -0.0734 27 1 -8.3726 6.2736 1.5363 28 1 -6.6811 6.4096 -0.1961 29 1 -0.3633 0.4056 0.9443 30 1 -0.3634 0.6150 -0.8234 31 1 -0.3634 -1.0205 -0.1208 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.4375 3.9429 0.0891 35 1 4.5407 2.3239 -0.6687 36 1 5.7762 4.6221 -1.7145 37 1 5.3085 3.2037 -2.7096 38 1 3.7108 5.7723 -2.1815 39 1 4.0201 4.9588 -3.7492 40 1 3.1584 0.2263 2.1408 41 1 4.3695 1.2142 1.2888 42 1 3.7639 1.7266 2.8825 43 1 1.3942 2.6335 3.0833 44 1 0.8674 1.0554 2.4506 45 1 0.1597 3.0462 0.5767 46 1 -2.5326 2.9784 0.4814 47 1 -2.0064 4.5569 1.1140 48 1 -7.4513 4.4544 3.3674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340037548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:16 Heat of formation + Delta-G solvation = -114.357204 kcal Electronic energy + Delta-G solvation = -29182.732973 eV Core-core repulsion = 25171.275539 eV Total energy + Delta-G solvation = -4011.457434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13565 -39.44484 -38.71042 -37.06678 -34.07389 -32.92044 -32.41655 -32.31116 -31.07608 -29.48822 -29.19330 -26.10903 -25.38311 -24.60445 -22.96628 -22.44812 -21.86513 -20.37427 -19.36230 -18.17362 -17.83365 -16.91874 -16.82490 -16.31460 -16.02129 -15.64594 -15.42880 -15.05918 -14.78872 -14.77101 -14.16772 -14.07600 -14.00618 -13.76898 -13.62344 -13.30682 -13.09794 -12.91497 -12.75055 -12.55382 -12.29636 -12.22395 -12.13855 -11.93964 -11.81251 -11.70935 -11.41971 -11.28066 -11.04724 -11.02609 -11.00818 -10.74657 -10.48178 -9.80840 -9.69395 -9.45742 -9.06035 -9.05297 -8.94702 -8.23595 -6.49070 -6.20568 -3.90982 2.25941 2.41510 3.00802 3.06657 3.24232 3.29167 3.33290 3.47333 3.69141 3.88893 4.06710 4.20097 4.22055 4.33131 4.46469 4.50470 4.68843 4.71960 4.81326 4.91684 5.06778 5.12285 5.14752 5.15025 5.17904 5.19959 5.24487 5.29530 5.32083 5.37651 5.44818 5.52221 5.53616 5.60376 5.68175 5.76416 5.87662 5.89884 6.15580 6.18031 6.28954 6.38238 6.53387 7.00873 7.60854 7.62688 7.87820 8.36984 8.56480 9.25141 10.86863 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.002767 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.603590 B =10116.619760 C =11143.866348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.605 5.605 4 C 0.512 3.488 5 O -0.510 6.510 6 C 0.057 3.943 7 H 0.093 0.907 8 C -0.146 4.146 9 C -0.153 4.153 10 C 0.043 3.957 11 O -0.345 6.345 12 C 0.117 3.883 13 H 0.098 0.902 14 C -0.162 4.162 15 C 0.109 3.891 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.395 0.605 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.111 -3.356 -6.519 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.005 4.005 3 N -0.341 5.341 4 C 0.299 3.701 5 O -0.384 6.384 6 C -0.005 4.005 7 H 0.111 0.889 8 C -0.184 4.184 9 C -0.191 4.191 10 C -0.034 4.034 11 O -0.263 6.263 12 C 0.013 3.987 13 H 0.116 0.884 14 C -0.220 4.220 15 C -0.016 4.016 16 N -0.391 5.391 17 C 0.321 3.679 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.229 0.771 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.335 -4.355 -5.208 28.166 hybrid contribution -0.445 1.229 -2.218 2.574 sum 26.891 -3.126 -7.426 28.072 Atomic orbital electron populations 1.22251 0.95079 1.02503 1.03354 1.21414 0.95105 0.81291 1.02717 1.48079 1.65847 1.14567 1.05653 1.20478 0.78955 0.87197 0.83482 1.90743 1.47159 1.68722 1.31774 1.22691 0.96983 0.93090 0.87719 0.88935 1.22999 0.92549 1.03193 0.99675 1.23142 0.98728 1.00217 0.97018 1.23701 0.83701 0.93926 1.02053 1.89086 1.42292 1.64493 1.30442 1.21617 0.94966 0.97903 0.84226 0.88416 1.22125 0.97487 1.01242 1.01167 1.21698 0.85530 0.99368 0.95004 1.45958 1.11772 1.62863 1.18460 1.20275 0.82666 0.78496 0.86502 1.90704 1.82219 1.48102 1.18000 1.23538 0.99655 1.02707 1.04609 1.85336 1.00631 1.78082 1.19156 1.22874 0.98449 1.44483 1.02511 0.90927 1.24985 0.97474 0.95516 0.95569 1.70016 1.19277 1.44547 1.16531 0.86171 0.80130 0.79297 0.79943 1.20252 1.20757 1.19656 0.91512 0.91983 0.91764 0.90363 0.90186 0.89338 0.89826 0.89608 0.90192 0.91579 0.88416 0.91367 0.91561 0.90543 0.90209 0.90786 0.77137 0.89281 0.89299 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.65 37.15 0.36 -1.64 16 2 C 0.12 1.07 5.32 -4.04 -0.02 1.05 16 3 N -0.61 -5.30 1.87 -166.10 -0.31 -5.62 16 4 C 0.51 5.77 6.48 -10.99 -0.07 5.70 16 5 O -0.51 -8.05 16.16 -13.98 -0.23 -8.28 16 6 C 0.06 0.51 2.92 -27.31 -0.08 0.43 16 7 H 0.09 0.71 7.24 -51.93 -0.38 0.33 16 8 C -0.15 -0.81 5.31 -25.20 -0.13 -0.95 16 9 C -0.15 -0.82 7.16 -24.72 -0.18 -1.00 16 10 C 0.04 0.30 7.72 38.21 0.29 0.60 16 11 O -0.35 -3.98 10.76 -54.76 -0.59 -4.57 16 12 C 0.12 0.77 2.25 -67.93 -0.15 0.62 16 13 H 0.10 0.52 4.80 -51.93 -0.25 0.27 16 14 C -0.16 -0.72 9.18 37.16 0.34 -0.38 16 15 C 0.11 1.06 4.34 -4.04 -0.02 1.05 16 16 N -0.74 -9.40 4.11 -60.30 -0.25 -9.65 16 17 C 0.53 9.71 7.73 -10.99 -0.08 9.63 16 18 O -0.52 -11.27 15.86 5.56 0.09 -11.18 16 19 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 22 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 25 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.07 0.86 5.44 -51.93 -0.28 0.58 16 30 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 33 H 0.08 0.56 6.44 -51.93 -0.33 0.23 16 34 H 0.09 0.30 7.84 -51.93 -0.41 -0.11 16 35 H 0.08 0.46 7.15 -51.93 -0.37 0.09 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.32 6.67 -51.93 -0.35 -0.03 16 41 H 0.07 0.25 7.60 -51.93 -0.39 -0.14 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.79 6.94 -51.93 -0.36 0.43 16 45 H 0.39 4.62 7.87 -40.82 -0.32 4.30 16 46 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 47 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -37.61 395.71 -8.75 -46.36 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.61 Total: 0.63 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 0.68 Total: -0.96 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.18 Total: -40.86 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.73 Total: -24.02 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.61 -8.75 -46.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340037548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.996 kcal (2) G-P(sol) polarization free energy of solvation -37.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds