Wall clock time and date at job start Sat Apr 11 2020 07:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47269 * 2 1 4 4 C 1.34775 * 120.00259 * 275.46890 * 3 2 1 5 5 O 1.21286 * 119.99907 * 4.67366 * 4 3 2 6 6 C 1.50701 * 120.00406 * 184.67139 * 4 3 2 7 7 H 1.09003 * 109.86915 * 306.45673 * 6 4 3 8 8 C 1.54100 * 109.87754 * 67.45806 * 6 4 3 9 9 C 1.54814 * 104.18462 * 121.45575 * 8 6 4 10 10 C 1.54995 * 102.09291 * 20.88118 * 9 8 6 11 11 O 1.43740 * 109.87989 * 185.44824 * 6 4 3 12 12 C 1.46499 * 119.99896 * 95.46997 * 3 2 1 13 13 H 1.09003 * 109.47364 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47621 * 59.99876 * 12 3 2 15 15 C 1.53004 * 109.46993 * 300.00025 * 12 3 2 16 16 N 1.46503 * 109.47219 * 304.99892 * 15 12 3 17 17 C 1.34776 * 120.00311 * 179.97438 * 16 15 12 18 18 O 1.21278 * 119.99779 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00194 * 180.02562 * 17 16 15 20 20 S 1.80994 * 109.47071 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00093 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99990 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00259 * 179.72053 * 21 20 19 24 24 N 1.31628 * 120.00016 * 0.28097 * 23 21 20 25 25 Si 1.86800 * 120.00302 * 180.27237 * 23 21 20 26 26 H 1.48504 * 109.47153 * 89.99977 * 25 23 21 27 27 H 1.48494 * 109.47228 * 210.00294 * 25 23 21 28 28 H 1.48506 * 109.46813 * 330.00425 * 25 23 21 29 29 H 1.09004 * 109.46957 * 293.24717 * 1 2 3 30 30 H 1.09004 * 109.47286 * 53.24185 * 1 2 3 31 31 H 1.08995 * 109.47334 * 173.24671 * 1 2 3 32 32 H 1.09001 * 109.47059 * 240.00072 * 2 1 3 33 33 H 1.09001 * 109.47773 * 119.99893 * 2 1 3 34 34 H 1.08999 * 110.49165 * 240.13202 * 8 6 4 35 35 H 1.09005 * 110.48859 * 2.65262 * 8 6 4 36 36 H 1.08993 * 110.90917 * 139.07977 * 9 8 6 37 37 H 1.09007 * 110.91047 * 262.68394 * 9 8 6 38 38 H 1.09002 * 110.61509 * 81.47351 * 10 9 8 39 39 H 1.09002 * 110.62119 * 204.47338 * 10 9 8 40 40 H 1.09002 * 109.46792 * 300.00542 * 14 12 3 41 41 H 1.09000 * 109.46646 * 60.00224 * 14 12 3 42 42 H 1.08996 * 109.47167 * 180.02562 * 14 12 3 43 43 H 1.09000 * 109.47151 * 185.00324 * 15 12 3 44 44 H 1.08991 * 109.47131 * 65.00183 * 15 12 3 45 45 H 0.97003 * 119.99748 * 0.02562 * 16 15 12 46 46 H 1.09000 * 109.46964 * 60.00305 * 19 17 16 47 47 H 1.09005 * 109.47024 * 300.00308 * 19 17 16 48 48 H 0.97002 * 120.00280 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1381 2.0537 -1.1618 5 8 1.7624 1.5465 -2.1976 6 6 2.7388 3.4357 -1.1742 7 1 2.2153 4.0736 -0.4619 8 6 4.2341 3.3604 -0.8094 9 6 4.9544 3.9803 -2.0316 10 6 3.8234 4.8132 -2.6870 11 8 2.6454 3.9975 -2.4940 12 6 2.3765 2.0315 1.2630 13 1 2.7154 3.0483 1.0648 14 6 3.4978 1.2430 1.9426 15 6 1.1529 2.0720 2.1807 16 7 0.0409 2.7228 1.4834 17 6 -1.1476 2.8712 2.1014 18 8 -1.2964 2.4664 3.2350 19 6 -2.2917 3.5400 1.3840 20 16 -3.7390 3.5881 2.4697 21 6 -4.8906 4.3961 1.4088 22 1 -4.5918 4.6946 0.4148 23 6 -6.1835 4.6445 1.8485 24 7 -6.5477 4.2813 3.0602 25 14 -7.4066 5.4943 0.7211 26 1 -8.1384 4.4751 -0.0734 27 1 -8.3726 6.2736 1.5363 28 1 -6.6811 6.4096 -0.1961 29 1 -0.3633 0.4056 0.9443 30 1 -0.3634 0.6150 -0.8234 31 1 -0.3634 -1.0205 -0.1208 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.4375 3.9429 0.0891 35 1 4.5407 2.3239 -0.6687 36 1 5.7762 4.6221 -1.7145 37 1 5.3085 3.2037 -2.7096 38 1 3.7108 5.7723 -2.1815 39 1 4.0201 4.9588 -3.7492 40 1 3.1584 0.2263 2.1408 41 1 4.3695 1.2142 1.2888 42 1 3.7639 1.7266 2.8825 43 1 1.3942 2.6335 3.0833 44 1 0.8674 1.0554 2.4506 45 1 0.1597 3.0462 0.5767 46 1 -2.5326 2.9784 0.4814 47 1 -2.0064 4.5569 1.1140 48 1 -7.4513 4.4544 3.3674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340037548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:15 Heat of formation + Delta-G solvation = -140.315124 kcal Electronic energy + Delta-G solvation = -29183.858593 eV Core-core repulsion = 25171.275539 eV Total energy + Delta-G solvation = -4012.583054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.90918 -40.61234 -39.58372 -38.01042 -35.24226 -34.60729 -33.63541 -32.99218 -31.87034 -30.83704 -29.89750 -27.75944 -26.81772 -25.29816 -23.70819 -23.05634 -22.43666 -21.76338 -20.15594 -19.79725 -18.82622 -17.95060 -17.71152 -17.41785 -17.02196 -16.89925 -16.60880 -16.28946 -16.12748 -15.85007 -15.52642 -14.88052 -14.76644 -14.65911 -14.55050 -14.51909 -14.34703 -14.03199 -13.64939 -13.54274 -13.20073 -13.19080 -13.03938 -12.91277 -12.76333 -12.72468 -12.62881 -12.53033 -12.19045 -11.98407 -11.88725 -11.79761 -11.73905 -11.16747 -11.15561 -11.00027 -10.47855 -10.32229 -10.14663 -9.86510 -8.68391 -8.37199 -6.14814 1.24337 1.40116 1.43895 1.44052 1.54987 1.58305 1.70096 2.23415 2.27377 2.90548 2.96809 3.27566 3.28924 3.51642 3.61105 3.78883 3.86091 3.97284 4.01895 4.12636 4.16809 4.22219 4.23188 4.34392 4.38772 4.45236 4.46472 4.58625 4.66201 4.68801 4.75292 4.76433 4.87221 4.91595 4.94466 4.99579 5.01757 5.14132 5.25870 5.33959 5.38993 5.39463 5.51348 5.79061 6.17371 6.26289 6.36476 7.04353 7.06338 7.17425 8.71953 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.002767 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.603590 B =10116.619760 C =11143.866348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.597 5.597 4 C 0.508 3.492 5 O -0.566 6.566 6 C 0.052 3.948 7 H 0.108 0.892 8 C -0.141 4.141 9 C -0.148 4.148 10 C 0.033 3.967 11 O -0.389 6.389 12 C 0.123 3.877 13 H 0.120 0.880 14 C -0.158 4.158 15 C 0.104 3.896 16 N -0.712 5.712 17 C 0.539 3.461 18 O -0.556 6.556 19 C -0.135 4.135 20 S -0.138 6.138 21 C -0.550 4.550 22 H 0.078 0.922 23 C 0.016 3.984 24 N -0.909 5.909 25 Si 0.996 3.004 26 H -0.269 1.269 27 H -0.274 1.274 28 H -0.260 1.260 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.403 0.597 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.633 -2.354 -6.753 31.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.332 5.332 4 C 0.296 3.704 5 O -0.444 6.444 6 C -0.009 4.009 7 H 0.125 0.875 8 C -0.178 4.178 9 C -0.186 4.186 10 C -0.043 4.043 11 O -0.308 6.308 12 C 0.020 3.980 13 H 0.138 0.862 14 C -0.216 4.216 15 C -0.020 4.020 16 N -0.365 5.365 17 C 0.325 3.675 18 O -0.434 6.434 19 C -0.286 4.286 20 S 0.089 5.911 21 C -0.698 4.698 22 H 0.096 0.904 23 C -0.189 4.189 24 N -0.545 5.545 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.199 1.199 28 H -0.184 1.184 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.238 0.762 46 H 0.114 0.886 47 H 0.124 0.876 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 29.923 -3.350 -5.437 30.597 hybrid contribution -1.130 0.875 -2.172 2.600 sum 28.793 -2.476 -7.609 29.884 Atomic orbital electron populations 1.22182 0.96994 1.02219 1.01209 1.21412 0.93323 0.81952 1.03719 1.48135 1.64783 1.14265 1.05993 1.21075 0.78113 0.88049 0.83144 1.90715 1.49708 1.70165 1.33836 1.22899 0.99340 0.91385 0.87297 0.87487 1.23078 0.89746 1.04057 1.00946 1.23141 0.98783 1.00054 0.96598 1.23946 0.83187 0.94414 1.02731 1.89045 1.44437 1.65399 1.31892 1.21803 0.94096 0.99535 0.82569 0.86228 1.22132 0.96635 1.00827 1.01972 1.22000 0.85278 0.98758 0.95938 1.45734 1.10846 1.61385 1.18501 1.19823 0.83528 0.78302 0.85843 1.90693 1.83005 1.50097 1.19608 1.23396 0.97644 1.04324 1.03249 1.85414 1.04585 1.78457 1.22612 1.23195 0.99185 1.44697 1.02726 0.90420 1.26082 0.99561 0.96034 0.97209 1.70163 1.19985 1.45778 1.18600 0.84989 0.77237 0.78238 0.77747 1.19441 1.19909 1.18410 0.92914 0.94720 0.91148 0.91144 0.87334 0.86071 0.89597 0.86847 0.91252 0.90004 0.88399 0.91503 0.90117 0.88765 0.89207 0.91403 0.76217 0.88582 0.87616 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 9.65 71.98 0.69 -3.20 16 2 C 0.12 2.04 5.32 86.38 0.46 2.50 16 3 N -0.60 -9.45 1.87 -797.82 -1.49 -10.94 16 4 C 0.51 11.01 6.48 87.66 0.57 11.58 16 5 O -0.57 -18.37 16.16 15.63 0.25 -18.11 16 6 C 0.05 0.83 2.92 30.22 0.09 0.92 16 7 H 0.11 1.33 7.24 -2.39 -0.02 1.31 16 8 C -0.14 -1.07 5.31 31.59 0.17 -0.90 16 9 C -0.15 -1.18 7.16 31.90 0.23 -0.95 16 10 C 0.03 0.42 7.72 72.66 0.56 0.98 16 11 O -0.39 -8.75 10.76 -130.31 -1.40 -10.15 16 12 C 0.12 1.23 2.25 44.99 0.10 1.33 16 13 H 0.12 0.74 4.80 -2.39 -0.01 0.73 16 14 C -0.16 -0.74 9.18 71.98 0.66 -0.08 16 15 C 0.10 1.80 4.34 86.38 0.37 2.17 16 16 N -0.71 -17.26 4.11 -463.07 -1.90 -19.17 16 17 C 0.54 19.50 7.73 87.66 0.68 20.18 16 18 O -0.56 -24.55 15.86 -3.02 -0.05 -24.60 16 19 C -0.13 -5.56 6.16 71.23 0.44 -5.12 16 20 S -0.14 -7.73 20.57 -56.49 -1.16 -8.89 16 21 C -0.55 -32.17 9.50 67.95 0.65 -31.52 16 22 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 23 C 0.02 0.94 5.49 84.86 0.47 1.40 16 24 N -0.91 -56.18 13.22 21.65 0.29 -55.90 16 25 Si 1.00 44.54 29.55 68.60 2.03 46.57 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 29 H 0.05 1.36 5.44 -2.38 -0.01 1.34 16 30 H 0.03 0.98 8.05 -2.39 -0.02 0.96 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.38 7.66 -2.39 -0.02 1.36 16 33 H 0.11 1.27 6.44 -2.39 -0.02 1.26 16 34 H 0.12 0.16 7.84 -2.39 -0.02 0.14 16 35 H 0.09 0.65 7.15 -2.38 -0.02 0.63 16 36 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 0.38 6.67 -2.39 -0.02 0.36 16 41 H 0.08 0.23 7.60 -2.39 -0.02 0.21 16 42 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.33 6.94 -2.39 -0.02 1.31 16 45 H 0.40 8.83 7.87 -92.71 -0.73 8.10 16 46 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 47 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 48 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -86.73 395.71 2.93 -83.79 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.24 Total: 18.12 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 6.13 Total: -0.71 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -3.11 Total: -86.01 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.20 Total: -52.87 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.16 Total: -8.89 kcal Total: -86.73 2.93 -83.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340037548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.522 kcal (2) G-P(sol) polarization free energy of solvation -86.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds