Wall clock time and date at job start Sat Apr 11 2020 07:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81402 * 109.46711 * 2 1 4 4 C 1.81406 * 102.99857 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46961 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46987 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47092 * 55.00189 * 6 5 4 8 8 C 1.53003 * 109.47137 * 175.00169 * 6 5 4 9 9 N 1.46504 * 109.46819 * 295.00210 * 6 5 4 10 10 C 1.34777 * 119.99827 * 155.00330 * 9 6 5 11 11 O 1.21345 * 120.00010 * 359.97438 * 10 9 6 12 12 C 1.49454 * 119.99788 * 179.97438 * 10 9 6 13 13 O 1.21345 * 120.00202 * 359.97438 * 12 10 9 14 14 N 1.34782 * 119.99657 * 179.97438 * 12 10 9 15 15 C 1.47021 * 125.64903 * 359.95924 * 14 12 10 16 16 C 1.54371 * 107.28632 * 181.12818 * 15 14 12 17 17 C 1.55156 * 102.92059 * 22.13773 * 16 15 14 18 18 O 1.42894 * 111.00351 * 82.64238 * 17 16 15 19 19 C 1.50705 * 111.00016 * 206.45621 * 17 16 15 20 20 H 1.07993 * 120.00222 * 356.18276 * 19 17 16 21 21 C 1.37881 * 119.99392 * 175.91314 * 19 17 16 22 22 N 1.31509 * 120.00570 * 354.23595 * 21 19 17 23 23 Si 1.86802 * 119.99449 * 174.23797 * 21 19 17 24 24 H 1.48500 * 109.47140 * 94.98922 * 23 21 19 25 25 H 1.48506 * 109.47182 * 214.98446 * 23 21 19 26 26 H 1.48500 * 109.47323 * 334.98680 * 23 21 19 27 27 C 1.47424 * 125.64568 * 179.97438 * 14 12 10 28 28 H 1.08999 * 109.47587 * 60.00232 * 1 2 3 29 29 H 1.09008 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47421 * 299.99598 * 1 2 3 31 31 H 1.08998 * 109.47191 * 239.99788 * 2 1 3 32 32 H 1.08999 * 109.47064 * 119.99821 * 2 1 3 33 33 H 1.09004 * 109.46654 * 59.99918 * 4 3 2 34 34 H 1.09002 * 109.47063 * 300.00248 * 4 3 2 35 35 H 1.09004 * 109.47268 * 60.00582 * 5 4 3 36 36 H 1.09002 * 109.47272 * 299.99802 * 5 4 3 37 37 H 1.08993 * 109.46891 * 299.99569 * 8 6 5 38 38 H 1.08997 * 109.46706 * 59.99717 * 8 6 5 39 39 H 1.09004 * 109.46909 * 179.97438 * 8 6 5 40 40 H 0.96999 * 120.00200 * 334.99646 * 9 6 5 41 41 H 1.08996 * 109.87865 * 300.51069 * 15 14 12 42 42 H 1.09004 * 109.88436 * 61.67611 * 15 14 12 43 43 H 1.09003 * 110.70184 * 263.79158 * 16 15 14 44 44 H 1.08998 * 110.75668 * 140.50398 * 16 15 14 45 45 H 0.96708 * 113.99643 * 183.17715 * 18 17 16 46 46 H 0.96997 * 120.00732 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36723 * 36.99330 * 27 14 12 48 48 H 1.09001 * 110.45885 * 274.72191 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 6 4.6063 2.8818 0.0002 6 6 6.1266 2.7094 0.0002 7 1 6.4212 2.0825 -0.8413 8 6 6.7952 4.0798 -0.1260 9 7 6.5460 2.0748 1.2523 10 6 7.6964 1.3743 1.3004 11 8 8.3845 1.2688 0.3064 12 6 8.1246 0.7274 2.5778 13 8 7.4367 0.8333 3.5718 14 7 9.2748 0.0264 2.6257 15 6 10.1989 -0.1816 1.5013 16 6 11.3561 -1.0643 2.0159 17 6 10.7316 -1.7716 3.2476 18 8 9.9685 -2.9126 2.8506 19 6 11.7935 -2.1561 4.2455 20 1 12.8353 -1.9847 4.0185 21 6 11.4345 -2.7217 5.4506 22 7 10.1646 -2.8218 5.7777 23 14 12.7519 -3.3456 6.6187 24 1 13.0719 -2.2901 7.6132 25 1 12.2563 -4.5554 7.3232 26 1 13.9748 -3.6873 5.8487 27 6 9.8143 -0.6591 3.8141 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2405 0.9543 -0.8890 34 1 4.2398 0.9545 0.8910 35 1 4.3029 3.4338 0.8898 36 1 4.3035 3.4327 -0.8902 37 1 6.4832 4.5518 -1.0575 38 1 6.5006 4.7066 0.7156 39 1 7.8783 3.9570 -0.1255 40 1 5.9959 2.1589 2.0468 41 1 9.6822 -0.6873 0.6856 42 1 10.5877 0.7774 1.1587 43 1 12.2061 -0.4503 2.3135 44 1 11.6510 -1.7932 1.2610 45 1 9.5191 -3.3589 3.5814 46 1 9.9120 -3.2200 6.6253 47 1 9.0056 -1.0959 4.3999 48 1 10.3920 0.0349 4.4247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349221432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:26 Heat of formation + Delta-G solvation = -132.191646 kcal Electronic energy + Delta-G solvation = -28418.267693 eV Core-core repulsion = 24406.036899 eV Total energy + Delta-G solvation = -4012.230794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.45500 -38.72891 -37.21028 -36.67794 -34.33023 -33.11790 -32.48974 -32.27507 -30.26385 -30.17231 -27.92343 -25.99677 -24.92910 -24.08681 -23.20346 -22.11110 -20.85052 -19.86271 -19.49012 -17.38018 -17.17361 -16.84711 -16.49326 -15.92100 -15.65563 -15.26462 -15.18946 -14.98553 -14.60719 -14.46274 -14.30315 -14.26067 -13.86537 -13.19568 -13.10355 -12.92887 -12.87815 -12.75010 -12.44152 -12.30289 -12.19094 -11.95850 -11.71918 -11.66005 -11.55552 -11.46434 -11.08150 -11.06553 -10.97872 -10.79406 -10.58480 -10.51806 -10.26729 -10.24162 -9.38851 -9.29640 -9.14098 -8.75260 -8.44080 -7.97599 -7.91518 -6.32679 -4.42165 1.32890 1.78129 2.27383 2.62229 3.17677 3.26171 3.29872 3.58680 3.87191 4.23453 4.34251 4.52909 4.57450 4.57690 4.63449 4.72384 4.94383 5.03205 5.05388 5.14683 5.21942 5.37673 5.39014 5.43174 5.46484 5.48268 5.62284 5.70985 5.76231 5.77108 5.82271 5.98259 6.03704 6.22051 6.34267 6.50095 6.71317 6.78625 6.83562 7.16057 7.22342 7.29583 7.69442 7.85847 7.97165 8.04170 8.43525 8.62008 9.25106 9.31115 10.73870 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.002372 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.776037 B =11802.838219 C =12949.775445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.269 6.269 4 C -0.087 4.087 5 C -0.110 4.110 6 C 0.146 3.854 7 H 0.093 0.907 8 C -0.163 4.163 9 N -0.705 5.705 10 C 0.512 3.488 11 O -0.516 6.516 12 C 0.506 3.494 13 O -0.538 6.538 14 N -0.574 5.574 15 C 0.112 3.888 16 C -0.122 4.122 17 C 0.248 3.752 18 O -0.581 6.581 19 C -0.538 4.538 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.892 5.892 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.271 1.271 27 C 0.092 3.908 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.411 0.589 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.380 0.620 46 H 0.270 0.730 47 H 0.091 0.909 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.420 9.780 -11.717 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.238 4.238 3 S -0.043 6.043 4 C -0.235 4.235 5 C -0.149 4.149 6 C 0.040 3.960 7 H 0.111 0.889 8 C -0.222 4.222 9 N -0.360 5.360 10 C 0.293 3.707 11 O -0.391 6.391 12 C 0.288 3.712 13 O -0.417 6.417 14 N -0.306 5.306 15 C -0.011 4.011 16 C -0.159 4.159 17 C 0.207 3.793 18 O -0.389 6.389 19 C -0.576 4.576 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.531 5.531 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.196 1.196 27 C -0.028 4.028 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.247 0.753 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.230 0.770 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.842 10.808 -12.375 21.484 hybrid contribution 0.872 -1.568 1.676 2.455 sum -12.970 9.240 -10.699 19.185 Atomic orbital electron populations 1.21515 0.92184 1.02621 1.03133 1.23312 1.00212 0.95079 1.05171 1.86807 1.05933 1.13375 1.98169 1.23417 0.92869 1.01515 1.05693 1.21659 0.93123 0.95425 1.04649 1.21036 0.92744 0.94873 0.87373 0.88858 1.22173 1.01858 0.95840 1.02298 1.45898 1.23417 1.52513 1.14158 1.20438 0.81677 0.79195 0.89391 1.90722 1.52773 1.59403 1.36196 1.19597 0.82024 0.81275 0.88334 1.90726 1.53347 1.61466 1.36196 1.48686 1.19408 1.47582 1.14911 1.22142 0.90763 0.99463 0.88710 1.22722 0.96325 0.97831 0.99071 1.19636 0.87660 0.82296 0.89667 1.86130 1.68580 1.44817 1.39363 1.21469 0.93381 1.42014 1.00719 0.91340 1.25094 0.95903 0.94564 0.97717 1.69746 1.15495 1.43958 1.23883 0.86383 0.81564 0.78526 0.80415 1.20514 1.20912 1.19597 1.23514 0.98801 0.94765 0.85744 0.91747 0.91037 0.91638 0.90080 0.89878 0.89833 0.89575 0.90037 0.89125 0.91308 0.92100 0.91584 0.75256 0.91240 0.91766 0.90352 0.90526 0.77011 0.91975 0.89070 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.92 37.16 0.37 -0.53 16 2 C -0.09 -0.71 6.66 37.16 0.25 -0.46 16 3 S -0.27 -2.52 21.74 -107.50 -2.34 -4.85 16 4 C -0.09 -0.77 5.83 37.15 0.22 -0.55 16 5 C -0.11 -0.85 4.76 -26.73 -0.13 -0.98 16 6 C 0.15 1.40 2.58 -67.92 -0.17 1.22 16 7 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 8 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 9 N -0.70 -8.68 4.52 -54.23 -0.25 -8.92 16 10 C 0.51 8.33 7.82 -11.58 -0.09 8.23 16 11 O -0.52 -9.00 13.79 5.50 0.08 -8.92 16 12 C 0.51 10.00 7.91 -11.58 -0.09 9.91 16 13 O -0.54 -11.63 16.73 5.50 0.09 -11.54 16 14 N -0.57 -12.04 3.33 -170.98 -0.57 -12.61 16 15 C 0.11 2.14 5.49 -3.04 -0.02 2.12 16 16 C -0.12 -2.45 6.13 -24.87 -0.15 -2.61 16 17 C 0.25 5.93 0.88 -89.61 -0.08 5.85 16 18 O -0.58 -14.58 13.17 -35.23 -0.46 -15.04 16 19 C -0.54 -13.72 8.25 -34.44 -0.28 -14.00 16 20 H 0.07 1.72 7.79 -52.49 -0.41 1.31 16 21 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16 22 N -0.89 -23.26 10.70 55.43 0.59 -22.67 16 23 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 C 0.09 2.18 5.40 -2.52 -0.01 2.17 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.09 0.85 7.75 -51.92 -0.40 0.45 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.41 4.81 8.07 -40.82 -0.33 4.48 16 41 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 42 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 43 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.38 9.72 7.54 45.56 0.34 10.06 16 46 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 47 H 0.09 2.39 7.31 -51.93 -0.38 2.01 16 48 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 404.61 15.07 6.10 6.10 Total: -1.00 -28.70 404.61 -9.12 -37.82 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -7.41 Total: 14.63 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 0.06 Total: 11.02 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.22 Total: -44.20 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.30 Total: -35.50 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.34 Total: -4.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.70 -9.12 -37.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349221432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.367 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds