Wall clock time and date at job start Sat Apr 11 2020 07:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81402 * 109.46711 * 2 1 4 4 C 1.81406 * 102.99857 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46961 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46987 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47092 * 55.00189 * 6 5 4 8 8 C 1.53003 * 109.47137 * 175.00169 * 6 5 4 9 9 N 1.46504 * 109.46819 * 295.00210 * 6 5 4 10 10 C 1.34777 * 119.99827 * 155.00330 * 9 6 5 11 11 O 1.21345 * 120.00010 * 359.97438 * 10 9 6 12 12 C 1.49454 * 119.99788 * 179.97438 * 10 9 6 13 13 O 1.21345 * 120.00202 * 359.97438 * 12 10 9 14 14 N 1.34782 * 119.99657 * 179.97438 * 12 10 9 15 15 C 1.47021 * 125.64903 * 359.95924 * 14 12 10 16 16 C 1.54371 * 107.28632 * 181.12818 * 15 14 12 17 17 C 1.55156 * 102.92059 * 22.13773 * 16 15 14 18 18 O 1.42894 * 111.00351 * 82.64238 * 17 16 15 19 19 C 1.50705 * 111.00016 * 206.45621 * 17 16 15 20 20 H 1.07993 * 120.00222 * 356.18276 * 19 17 16 21 21 C 1.37881 * 119.99392 * 175.91314 * 19 17 16 22 22 N 1.31509 * 120.00570 * 354.23595 * 21 19 17 23 23 Si 1.86802 * 119.99449 * 174.23797 * 21 19 17 24 24 H 1.48500 * 109.47140 * 94.98922 * 23 21 19 25 25 H 1.48506 * 109.47182 * 214.98446 * 23 21 19 26 26 H 1.48500 * 109.47323 * 334.98680 * 23 21 19 27 27 C 1.47424 * 125.64568 * 179.97438 * 14 12 10 28 28 H 1.08999 * 109.47587 * 60.00232 * 1 2 3 29 29 H 1.09008 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47421 * 299.99598 * 1 2 3 31 31 H 1.08998 * 109.47191 * 239.99788 * 2 1 3 32 32 H 1.08999 * 109.47064 * 119.99821 * 2 1 3 33 33 H 1.09004 * 109.46654 * 59.99918 * 4 3 2 34 34 H 1.09002 * 109.47063 * 300.00248 * 4 3 2 35 35 H 1.09004 * 109.47268 * 60.00582 * 5 4 3 36 36 H 1.09002 * 109.47272 * 299.99802 * 5 4 3 37 37 H 1.08993 * 109.46891 * 299.99569 * 8 6 5 38 38 H 1.08997 * 109.46706 * 59.99717 * 8 6 5 39 39 H 1.09004 * 109.46909 * 179.97438 * 8 6 5 40 40 H 0.96999 * 120.00200 * 334.99646 * 9 6 5 41 41 H 1.08996 * 109.87865 * 300.51069 * 15 14 12 42 42 H 1.09004 * 109.88436 * 61.67611 * 15 14 12 43 43 H 1.09003 * 110.70184 * 263.79158 * 16 15 14 44 44 H 1.08998 * 110.75668 * 140.50398 * 16 15 14 45 45 H 0.96708 * 113.99643 * 183.17715 * 18 17 16 46 46 H 0.96997 * 120.00732 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36723 * 36.99330 * 27 14 12 48 48 H 1.09001 * 110.45885 * 274.72191 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 6 4.6063 2.8818 0.0002 6 6 6.1266 2.7094 0.0002 7 1 6.4212 2.0825 -0.8413 8 6 6.7952 4.0798 -0.1260 9 7 6.5460 2.0748 1.2523 10 6 7.6964 1.3743 1.3004 11 8 8.3845 1.2688 0.3064 12 6 8.1246 0.7274 2.5778 13 8 7.4367 0.8333 3.5718 14 7 9.2748 0.0264 2.6257 15 6 10.1989 -0.1816 1.5013 16 6 11.3561 -1.0643 2.0159 17 6 10.7316 -1.7716 3.2476 18 8 9.9685 -2.9126 2.8506 19 6 11.7935 -2.1561 4.2455 20 1 12.8353 -1.9847 4.0185 21 6 11.4345 -2.7217 5.4506 22 7 10.1646 -2.8218 5.7777 23 14 12.7519 -3.3456 6.6187 24 1 13.0719 -2.2901 7.6132 25 1 12.2563 -4.5554 7.3232 26 1 13.9748 -3.6873 5.8487 27 6 9.8143 -0.6591 3.8141 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2405 0.9543 -0.8890 34 1 4.2398 0.9545 0.8910 35 1 4.3029 3.4338 0.8898 36 1 4.3035 3.4327 -0.8902 37 1 6.4832 4.5518 -1.0575 38 1 6.5006 4.7066 0.7156 39 1 7.8783 3.9570 -0.1255 40 1 5.9959 2.1589 2.0468 41 1 9.6822 -0.6873 0.6856 42 1 10.5877 0.7774 1.1587 43 1 12.2061 -0.4503 2.3135 44 1 11.6510 -1.7932 1.2610 45 1 9.5191 -3.3589 3.5814 46 1 9.9120 -3.2200 6.6253 47 1 9.0056 -1.0959 4.3999 48 1 10.3920 0.0349 4.4247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349221432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:25 Heat of formation + Delta-G solvation = -151.241483 kcal Electronic energy + Delta-G solvation = -28419.093756 eV Core-core repulsion = 24406.036899 eV Total energy + Delta-G solvation = -4013.056857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86221 -40.20091 -38.90728 -37.72336 -36.11146 -34.24925 -33.69687 -33.47313 -31.95997 -30.98359 -29.70045 -27.71913 -25.92431 -25.30120 -24.09606 -23.41328 -21.78482 -21.57451 -20.96727 -19.18787 -18.74470 -18.10987 -17.38747 -17.14454 -17.11338 -16.97416 -16.29098 -16.01171 -15.92218 -15.70812 -15.41827 -15.17169 -14.91806 -14.79542 -14.68755 -14.52747 -13.97569 -13.77347 -13.58146 -13.50983 -13.34613 -13.14584 -12.84166 -12.84050 -12.68271 -12.55433 -12.53325 -12.35913 -12.30657 -12.24671 -12.14204 -12.10166 -11.68375 -11.20853 -10.96944 -10.74902 -10.61140 -10.38155 -10.29917 -9.64598 -8.70838 -8.26338 -6.42990 0.34368 0.64790 1.27824 1.42365 1.45784 1.55604 1.58682 2.12208 2.36672 2.51624 2.99051 3.30623 3.64468 3.75561 3.81941 3.89152 3.97935 4.04479 4.04899 4.14699 4.29704 4.31761 4.39667 4.48319 4.53350 4.64447 4.70504 4.75905 4.76694 4.84339 4.88101 4.92031 4.97577 5.05341 5.05727 5.14406 5.19054 5.26449 5.32437 5.34871 5.41913 5.73458 5.97799 6.05489 6.37506 6.61408 6.67595 6.92780 7.24952 7.32038 8.78741 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.002372 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.776037 B =11802.838219 C =12949.775445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 S -0.291 6.291 4 C -0.083 4.083 5 C -0.099 4.099 6 C 0.146 3.854 7 H 0.088 0.912 8 C -0.159 4.159 9 N -0.686 5.686 10 C 0.520 3.480 11 O -0.527 6.527 12 C 0.498 3.502 13 O -0.562 6.562 14 N -0.583 5.583 15 C 0.120 3.880 16 C -0.116 4.116 17 C 0.233 3.767 18 O -0.586 6.586 19 C -0.556 4.556 20 H 0.070 0.930 21 C 0.028 3.972 22 N -0.914 5.914 23 Si 0.965 3.035 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.267 1.267 27 C 0.107 3.893 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.415 0.585 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.374 0.626 46 H 0.270 0.730 47 H 0.058 0.942 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.591 10.786 -12.996 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.236 4.236 3 S -0.065 6.065 4 C -0.231 4.231 5 C -0.138 4.138 6 C 0.041 3.959 7 H 0.106 0.894 8 C -0.218 4.218 9 N -0.340 5.340 10 C 0.300 3.700 11 O -0.404 6.404 12 C 0.282 3.718 13 O -0.443 6.443 14 N -0.315 5.315 15 C -0.002 4.002 16 C -0.153 4.153 17 C 0.193 3.807 18 O -0.394 6.394 19 C -0.594 4.594 20 H 0.088 0.912 21 C -0.173 4.173 22 N -0.552 5.552 23 Si 0.790 3.210 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.191 1.191 27 C -0.015 4.015 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.252 0.748 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.222 0.778 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.036 11.845 -13.685 22.904 hybrid contribution 0.831 -1.864 2.069 2.906 sum -13.205 9.981 -11.617 20.222 Atomic orbital electron populations 1.21519 0.91144 1.03513 1.03002 1.23389 1.01095 0.93890 1.05255 1.86848 1.06473 1.14989 1.98183 1.23395 0.92576 1.02067 1.05096 1.21614 0.91295 0.95001 1.05854 1.21259 0.94079 0.95086 0.85462 0.89413 1.22147 1.00391 0.95220 1.03995 1.45929 1.21721 1.50881 1.15499 1.19727 0.82856 0.79823 0.87588 1.90718 1.53528 1.60320 1.35821 1.20347 0.81239 0.80644 0.89570 1.90702 1.53866 1.62153 1.37559 1.48726 1.20344 1.47903 1.14507 1.22155 0.89968 1.00240 0.87810 1.22736 0.96968 0.97968 0.97659 1.19857 0.87511 0.82000 0.91382 1.86122 1.68722 1.45374 1.39161 1.21757 0.93841 1.42378 1.01394 0.91168 1.25809 0.97647 0.94708 0.99153 1.69857 1.16906 1.44303 1.24163 0.85441 0.79290 0.77821 0.78459 1.20276 1.20866 1.19114 1.23070 0.97498 0.94619 0.86356 0.91562 0.89610 0.92051 0.89473 0.90307 0.89622 0.90963 0.89489 0.87200 0.88841 0.91362 0.93572 0.74779 0.91241 0.89726 0.88961 0.89605 0.77766 0.92044 0.92362 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.92 71.98 0.71 -0.88 16 2 C -0.09 -1.31 6.66 71.98 0.48 -0.83 16 3 S -0.29 -5.10 21.74 -56.49 -1.23 -6.33 16 4 C -0.08 -1.35 5.83 71.98 0.42 -0.94 16 5 C -0.10 -1.31 4.76 30.59 0.15 -1.16 16 6 C 0.15 2.50 2.58 44.99 0.12 2.61 16 7 H 0.09 1.68 7.58 -2.39 -0.02 1.66 16 8 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 9 N -0.69 -16.07 4.52 -443.85 -2.01 -18.08 16 10 C 0.52 16.50 7.82 87.27 0.68 17.18 16 11 O -0.53 -17.70 13.79 -3.23 -0.04 -17.75 16 12 C 0.50 19.81 7.91 87.27 0.69 20.50 16 13 O -0.56 -24.74 16.73 -3.23 -0.05 -24.79 16 14 N -0.58 -24.60 3.33 -813.23 -2.71 -27.30 16 15 C 0.12 4.48 5.49 86.75 0.48 4.95 16 16 C -0.12 -4.56 6.13 31.80 0.19 -4.36 16 17 C 0.23 11.23 0.88 -10.14 -0.01 11.22 16 18 O -0.59 -29.92 13.17 -148.98 -1.96 -31.88 16 19 C -0.56 -28.45 8.25 25.60 0.21 -28.24 16 20 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 21 C 0.03 1.44 5.27 84.66 0.45 1.88 16 22 N -0.91 -48.61 10.70 21.45 0.23 -48.38 16 23 Si 0.96 41.03 29.54 68.60 2.03 43.06 16 24 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 C 0.11 5.17 5.40 86.86 0.47 5.64 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.38 7.75 -2.39 -0.02 1.36 16 35 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.42 9.29 8.07 -92.71 -0.75 8.54 16 41 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 42 H 0.08 2.82 7.69 -2.39 -0.02 2.80 16 43 H 0.09 3.35 8.03 -2.39 -0.02 3.33 16 44 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.37 19.73 7.54 -74.05 -0.56 19.18 16 46 H 0.27 13.78 8.31 -92.71 -0.77 13.00 16 47 H 0.06 3.18 7.31 -2.39 -0.02 3.17 16 48 H 0.05 2.73 8.03 -2.39 -0.02 2.71 16 Total: -1.00 -61.78 404.61 -0.37 -62.15 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.34 Total: 43.42 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 5.72 Total: 25.88 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -4.48 Total: -93.76 kcal Atomic # 8 Polarization: -72.36 SS G_CDS: -2.06 Total: -74.42 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -1.23 Total: -6.33 kcal Total: -61.78 -0.37 -62.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349221432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.094 kcal (2) G-P(sol) polarization free energy of solvation -61.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds