Wall clock time and date at job start Sat Apr 11 2020 07:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53002 * 109.47072 * 269.99829 * 4 3 2 7 7 C 1.50700 * 109.47036 * 149.99828 * 4 3 2 8 8 O 1.21284 * 120.00340 * 4.99714 * 7 4 3 9 9 N 1.34783 * 119.99696 * 185.00262 * 7 4 3 10 10 C 1.46923 * 120.62996 * 359.71481 * 9 7 4 11 11 C 1.53627 * 108.54010 * 126.37024 * 10 9 7 12 12 C 1.53036 * 109.23843 * 54.85860 * 11 10 9 13 13 C 1.53040 * 109.54036 * 298.50670 * 12 11 10 14 14 H 1.09000 * 109.50067 * 301.41829 * 13 12 11 15 15 N 1.46507 * 109.50062 * 181.31892 * 13 12 11 16 16 C 1.34775 * 119.99802 * 85.16432 * 15 13 12 17 17 O 1.21277 * 119.99966 * 359.97438 * 16 15 13 18 18 C 1.50695 * 119.99667 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.47133 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00423 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99924 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00630 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00297 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99698 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47100 * 89.99907 * 24 22 20 26 26 H 1.48494 * 109.47416 * 209.99818 * 24 22 20 27 27 H 1.48507 * 109.46984 * 330.00327 * 24 22 20 28 28 C 1.46924 * 120.62894 * 180.02562 * 9 7 4 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 34 34 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 35 35 H 1.08997 * 109.46833 * 300.00204 * 6 4 3 36 36 H 1.09001 * 109.46890 * 59.99978 * 6 4 3 37 37 H 1.09002 * 109.58691 * 246.20484 * 10 9 7 38 38 H 1.09006 * 109.58773 * 6.63312 * 10 9 7 39 39 H 1.09002 * 109.63669 * 294.86439 * 11 10 9 40 40 H 1.08998 * 109.45783 * 174.74112 * 11 10 9 41 41 H 1.09003 * 109.45873 * 178.48973 * 12 11 10 42 42 H 1.08998 * 109.45158 * 58.52397 * 12 11 10 43 43 H 0.96993 * 119.99501 * 265.16666 * 15 13 12 44 44 H 1.09001 * 109.47390 * 299.99603 * 18 16 15 45 45 H 1.08997 * 109.47193 * 60.00113 * 18 16 15 46 46 H 0.97005 * 119.99719 * 180.02562 * 23 22 20 47 47 H 1.09007 * 109.58610 * 353.36136 * 28 9 7 48 48 H 1.08990 * 109.58906 * 113.65186 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5002 1.4417 7 6 3.8342 2.7264 -0.7110 8 8 2.9856 3.5049 -1.0916 9 7 5.1380 2.9939 -0.9235 10 6 6.1778 2.0636 -0.4630 11 6 7.0812 1.7119 -1.6547 12 6 7.6226 3.0019 -2.2750 13 6 6.4576 3.8511 -2.7885 14 1 5.8887 3.2819 -3.5237 15 7 6.9785 5.0711 -3.4103 16 6 7.3641 5.0575 -4.7016 17 8 7.2803 4.0353 -5.3488 18 6 7.9004 6.3123 -5.3410 19 16 8.3290 5.9743 -7.0668 20 6 8.9106 7.5643 -7.5548 21 1 8.9180 8.3780 -6.8446 22 6 9.3592 7.7713 -8.8518 23 7 9.7940 8.9590 -9.2162 24 14 9.3470 6.3639 -10.0801 25 1 8.0470 6.3442 -10.7976 26 1 10.4492 6.5504 -11.0576 27 1 9.5351 5.0780 -9.3613 28 6 5.5468 4.2246 -1.6142 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0265 1.5858 1.4413 35 1 3.5076 2.3586 1.9558 36 1 3.6482 0.5842 1.9555 37 1 6.7696 2.5361 0.3210 38 1 5.7118 1.1573 -0.0759 39 1 6.5065 1.1627 -2.4005 40 1 7.9127 1.0967 -1.3108 41 1 8.2856 2.7556 -3.1044 42 1 8.1762 3.5624 -1.5217 43 1 7.0459 5.8886 -2.8926 44 1 7.1414 7.0935 -5.3012 45 1 8.7898 6.6421 -4.8041 46 1 10.1072 9.1037 -10.1228 47 1 4.6644 4.7447 -1.9871 48 1 6.0861 4.8704 -0.9214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356728892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:51 Heat of formation + Delta-G solvation = -119.438810 kcal Electronic energy + Delta-G solvation = -27894.818302 eV Core-core repulsion = 23883.140513 eV Total energy + Delta-G solvation = -4011.677789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94864 -39.54427 -38.37723 -37.32725 -34.84191 -33.05607 -32.51151 -32.44200 -31.06892 -30.25903 -28.44471 -26.42805 -25.61919 -24.32530 -23.38874 -23.07360 -21.33410 -20.51225 -19.55123 -17.93563 -17.83669 -17.26608 -16.60922 -16.41952 -16.11753 -15.90015 -15.26614 -15.15550 -14.95524 -14.74495 -14.62762 -14.16184 -14.02162 -13.80842 -13.57150 -13.38917 -13.29807 -12.98893 -12.91756 -12.79904 -12.68512 -12.41960 -12.21614 -11.84690 -11.73847 -11.53990 -11.45190 -11.27347 -11.19401 -11.14662 -11.00894 -10.61889 -10.33338 -9.88387 -9.82647 -9.55174 -9.22195 -9.00861 -8.92445 -8.50980 -6.92444 -6.29153 -4.01020 2.17284 2.24033 2.77380 2.93139 3.23111 3.32906 3.38398 3.49901 3.65112 3.96444 4.27010 4.32739 4.38864 4.40891 4.48061 4.53036 4.57625 4.63157 4.73296 4.76009 4.85358 4.90093 4.92790 5.00764 5.09920 5.11207 5.14392 5.28303 5.30015 5.32400 5.39094 5.47193 5.56357 5.57929 5.64460 5.72860 5.75410 5.91137 5.96998 5.99123 6.02776 6.49908 6.61690 6.94578 7.55314 7.79896 7.93845 8.41426 8.44880 9.16992 10.80033 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022244 B = 0.001929 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.452167 B =14510.096081 C =14883.680263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.087 0.913 6 C -0.179 4.179 7 C 0.517 3.483 8 O -0.514 6.514 9 N -0.608 5.608 10 C 0.098 3.902 11 C -0.133 4.133 12 C -0.132 4.132 13 C 0.135 3.865 14 H 0.092 0.908 15 N -0.732 5.732 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.124 4.124 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 C 0.108 3.892 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.271 0.729 47 H 0.100 0.900 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 -19.088 26.151 33.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.012 3.988 5 H 0.104 0.896 6 C -0.236 4.236 7 C 0.304 3.696 8 O -0.387 6.387 9 N -0.344 5.344 10 C -0.024 4.024 11 C -0.172 4.172 12 C -0.171 4.171 13 C 0.029 3.971 14 H 0.110 0.890 15 N -0.386 5.386 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 C -0.015 4.015 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.234 0.766 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.832 -20.091 24.710 33.639 hybrid contribution 0.545 0.998 0.314 1.180 sum -10.287 -19.093 25.024 33.115 Atomic orbital electron populations 1.21731 0.93259 1.02327 1.03537 1.22615 0.96136 0.83335 1.00126 1.88067 1.18083 1.26522 1.94918 1.21829 0.83999 0.96318 0.96694 0.89558 1.22431 1.02190 1.04039 0.94960 1.20411 0.81935 0.87769 0.79476 1.90745 1.49502 1.48730 1.49759 1.47905 1.05419 1.22725 1.58333 1.22162 0.89888 0.93331 0.97062 1.21995 0.99581 0.98098 0.97541 1.21953 0.98179 0.95714 1.01254 1.21173 0.94463 0.86860 0.94613 0.89000 1.45898 1.67401 1.13031 1.12234 1.20286 0.76637 0.90214 0.80838 1.90698 1.52748 1.33558 1.62118 1.23281 1.04154 0.97878 1.02174 1.84785 1.83398 1.18916 1.04428 1.22315 1.48989 0.94563 1.01060 0.89367 1.24711 0.93346 0.95815 0.97432 1.69937 1.40866 1.21416 1.19419 0.86736 0.78855 0.84154 0.82099 1.19198 1.19943 1.15958 1.21776 0.99983 0.86271 0.93513 0.90919 0.91722 0.91533 0.93122 0.93156 0.90249 0.90907 0.91059 0.90537 0.89224 0.90987 0.90006 0.90408 0.91390 0.76562 0.88396 0.88388 0.91940 0.88138 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.36 6.47 37.16 0.24 0.60 16 3 O -0.36 -3.65 9.53 -55.09 -0.52 -4.17 16 4 C 0.07 0.58 2.30 -27.88 -0.06 0.51 16 5 H 0.09 0.49 7.09 -51.93 -0.37 0.12 16 6 C -0.18 -0.92 9.10 37.16 0.34 -0.58 16 7 C 0.52 5.69 7.12 -10.98 -0.08 5.61 16 8 O -0.51 -8.09 15.92 -14.30 -0.23 -8.32 16 9 N -0.61 -5.23 2.97 -172.48 -0.51 -5.74 16 10 C 0.10 0.51 5.00 -3.49 -0.02 0.49 16 11 C -0.13 -0.86 6.10 -26.39 -0.16 -1.02 16 12 C -0.13 -1.20 5.46 -26.69 -0.15 -1.35 16 13 C 0.14 1.48 2.61 -67.79 -0.18 1.30 16 14 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 15 N -0.73 -8.90 5.08 -53.67 -0.27 -9.17 16 16 C 0.53 9.23 7.81 -10.99 -0.09 9.14 16 17 O -0.52 -10.90 15.52 5.56 0.09 -10.82 16 18 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 19 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 20 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 21 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 24 Si 0.86 21.82 27.74 -169.99 -4.71 17.10 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 C 0.11 1.01 5.90 -3.69 -0.02 0.99 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.05 0.24 7.87 -51.93 -0.41 -0.17 16 34 H 0.08 0.26 5.39 -51.93 -0.28 -0.02 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.27 7.87 -51.93 -0.41 -0.14 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.30 4.65 -51.93 -0.24 0.05 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 47 H 0.10 1.16 7.01 -51.93 -0.36 0.80 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -37.61 398.26 -8.62 -46.23 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.89 Total: -0.78 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 0.65 Total: 1.01 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.01 Total: -40.70 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.67 Total: -23.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.61 -8.62 -46.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356728892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.207 kcal (2) G-P(sol) polarization free energy of solvation -37.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds