Wall clock time and date at job start Sat Apr 11 2020 07:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53002 * 109.47072 * 269.99829 * 4 3 2 7 7 C 1.50700 * 109.47036 * 149.99828 * 4 3 2 8 8 O 1.21284 * 120.00340 * 4.99714 * 7 4 3 9 9 N 1.34783 * 119.99696 * 185.00262 * 7 4 3 10 10 C 1.46923 * 120.62996 * 359.71481 * 9 7 4 11 11 C 1.53627 * 108.54010 * 126.37024 * 10 9 7 12 12 C 1.53036 * 109.23843 * 54.85860 * 11 10 9 13 13 C 1.53040 * 109.54036 * 298.50670 * 12 11 10 14 14 H 1.09000 * 109.50067 * 301.41829 * 13 12 11 15 15 N 1.46507 * 109.50062 * 181.31892 * 13 12 11 16 16 C 1.34775 * 119.99802 * 85.16432 * 15 13 12 17 17 O 1.21277 * 119.99966 * 359.97438 * 16 15 13 18 18 C 1.50695 * 119.99667 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.47133 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00423 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99924 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00630 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00297 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99698 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47100 * 89.99907 * 24 22 20 26 26 H 1.48494 * 109.47416 * 209.99818 * 24 22 20 27 27 H 1.48507 * 109.46984 * 330.00327 * 24 22 20 28 28 C 1.46924 * 120.62894 * 180.02562 * 9 7 4 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 34 34 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 35 35 H 1.08997 * 109.46833 * 300.00204 * 6 4 3 36 36 H 1.09001 * 109.46890 * 59.99978 * 6 4 3 37 37 H 1.09002 * 109.58691 * 246.20484 * 10 9 7 38 38 H 1.09006 * 109.58773 * 6.63312 * 10 9 7 39 39 H 1.09002 * 109.63669 * 294.86439 * 11 10 9 40 40 H 1.08998 * 109.45783 * 174.74112 * 11 10 9 41 41 H 1.09003 * 109.45873 * 178.48973 * 12 11 10 42 42 H 1.08998 * 109.45158 * 58.52397 * 12 11 10 43 43 H 0.96993 * 119.99501 * 265.16666 * 15 13 12 44 44 H 1.09001 * 109.47390 * 299.99603 * 18 16 15 45 45 H 1.08997 * 109.47193 * 60.00113 * 18 16 15 46 46 H 0.97005 * 119.99719 * 180.02562 * 23 22 20 47 47 H 1.09007 * 109.58610 * 353.36136 * 28 9 7 48 48 H 1.08990 * 109.58906 * 113.65186 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5002 1.4417 7 6 3.8342 2.7264 -0.7110 8 8 2.9856 3.5049 -1.0916 9 7 5.1380 2.9939 -0.9235 10 6 6.1778 2.0636 -0.4630 11 6 7.0812 1.7119 -1.6547 12 6 7.6226 3.0019 -2.2750 13 6 6.4576 3.8511 -2.7885 14 1 5.8887 3.2819 -3.5237 15 7 6.9785 5.0711 -3.4103 16 6 7.3641 5.0575 -4.7016 17 8 7.2803 4.0353 -5.3488 18 6 7.9004 6.3123 -5.3410 19 16 8.3290 5.9743 -7.0668 20 6 8.9106 7.5643 -7.5548 21 1 8.9180 8.3780 -6.8446 22 6 9.3592 7.7713 -8.8518 23 7 9.7940 8.9590 -9.2162 24 14 9.3470 6.3639 -10.0801 25 1 8.0470 6.3442 -10.7976 26 1 10.4492 6.5504 -11.0576 27 1 9.5351 5.0780 -9.3613 28 6 5.5468 4.2246 -1.6142 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0265 1.5858 1.4413 35 1 3.5076 2.3586 1.9558 36 1 3.6482 0.5842 1.9555 37 1 6.7696 2.5361 0.3210 38 1 5.7118 1.1573 -0.0759 39 1 6.5065 1.1627 -2.4005 40 1 7.9127 1.0967 -1.3108 41 1 8.2856 2.7556 -3.1044 42 1 8.1762 3.5624 -1.5217 43 1 7.0459 5.8886 -2.8926 44 1 7.1414 7.0935 -5.3012 45 1 8.7898 6.6421 -4.8041 46 1 10.1072 9.1037 -10.1228 47 1 4.6644 4.7447 -1.9871 48 1 6.0861 4.8704 -0.9214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356728892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:50 Heat of formation + Delta-G solvation = -146.718201 kcal Electronic energy + Delta-G solvation = -27896.001225 eV Core-core repulsion = 23883.140513 eV Total energy + Delta-G solvation = -4012.860712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73337 -40.73089 -39.12030 -38.21067 -35.87731 -34.68358 -33.80938 -33.13381 -31.96144 -31.05878 -29.58031 -27.85781 -27.08813 -24.91808 -24.12216 -23.59203 -22.22452 -21.65162 -20.36450 -19.83325 -18.49958 -18.09704 -17.88882 -17.39389 -17.10436 -16.87968 -16.60908 -16.49514 -15.98186 -15.81102 -15.43434 -15.27274 -14.99100 -14.96585 -14.75983 -14.44545 -14.16338 -13.95419 -13.70374 -13.65633 -13.39143 -13.35366 -13.18867 -13.03368 -12.93876 -12.66990 -12.44013 -12.33253 -12.16188 -12.07177 -11.93287 -11.88328 -11.81977 -11.18435 -11.10497 -10.92571 -10.55311 -10.50274 -10.25204 -9.76237 -9.01001 -8.52513 -6.23446 0.95667 1.30458 1.37417 1.45952 1.49907 1.52969 1.64351 2.22498 2.27090 2.69722 2.80153 2.85699 3.35524 3.59571 3.74305 3.83562 3.83823 3.92006 3.97909 4.00664 4.18081 4.19157 4.22258 4.30369 4.43146 4.45400 4.47300 4.52062 4.60612 4.68400 4.69130 4.79503 4.84819 4.88305 5.00410 5.01530 5.14635 5.18875 5.23504 5.25542 5.34342 5.48754 5.69752 6.06021 6.10502 6.30102 6.41821 6.92629 7.03220 7.15346 8.59801 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022244 B = 0.001929 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.452167 B =14510.096081 C =14883.680263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.072 3.928 5 H 0.113 0.887 6 C -0.171 4.171 7 C 0.508 3.492 8 O -0.576 6.576 9 N -0.602 5.602 10 C 0.095 3.905 11 C -0.129 4.129 12 C -0.128 4.128 13 C 0.137 3.863 14 H 0.056 0.944 15 N -0.708 5.708 16 C 0.539 3.461 17 O -0.560 6.560 18 C -0.111 4.111 19 S -0.176 6.176 20 C -0.529 4.529 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.914 3.086 25 H -0.264 1.264 26 H -0.258 1.258 27 H -0.236 1.236 28 C 0.113 3.887 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.418 0.582 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.277 0.723 47 H 0.073 0.927 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.302 -21.408 28.877 37.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.011 3.989 5 H 0.130 0.870 6 C -0.229 4.229 7 C 0.297 3.703 8 O -0.454 6.454 9 N -0.337 5.337 10 C -0.026 4.026 11 C -0.167 4.167 12 C -0.167 4.167 13 C 0.032 3.968 14 H 0.074 0.926 15 N -0.362 5.362 16 C 0.324 3.676 17 O -0.438 6.438 18 C -0.262 4.262 19 S 0.050 5.950 20 C -0.677 4.677 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.736 3.264 25 H -0.189 1.189 26 H -0.182 1.182 27 H -0.160 1.160 28 C -0.011 4.011 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.256 0.744 44 H 0.130 0.870 45 H 0.136 0.864 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.961 -22.412 27.500 36.848 hybrid contribution 0.243 1.745 -0.399 1.807 sum -9.718 -20.666 27.101 35.440 Atomic orbital electron populations 1.21776 0.93435 1.03445 1.02322 1.22824 0.96157 0.82196 1.01606 1.88033 1.19555 1.28665 1.95201 1.22029 0.83406 0.95162 0.98307 0.86981 1.22428 1.03443 1.04297 0.92694 1.21184 0.81998 0.88299 0.78854 1.90712 1.51307 1.50894 1.52531 1.48029 1.05646 1.22782 1.57211 1.22510 0.89079 0.93987 0.97020 1.21994 1.00486 0.96711 0.97537 1.21918 0.96797 0.97002 1.00944 1.21241 0.95379 0.86023 0.94193 0.92570 1.45652 1.65344 1.14560 1.10596 1.19943 0.76692 0.88806 0.82115 1.90689 1.54968 1.34677 1.63499 1.23270 1.05583 0.99337 0.98013 1.84714 1.83524 1.16943 1.09790 1.22459 1.48795 0.95546 1.00882 0.91900 1.25558 0.93080 0.98098 0.99244 1.70013 1.41879 1.23175 1.20314 0.85873 0.79363 0.81122 0.80033 1.18910 1.18203 1.16037 1.21661 0.98671 0.87190 0.93547 0.88615 0.92189 0.93491 0.92525 0.90590 0.87820 0.92706 0.89041 0.87576 0.86585 0.92602 0.87229 0.93315 0.88987 0.74418 0.87021 0.86390 0.91361 0.90887 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 0.56 6.47 71.98 0.47 1.03 16 3 O -0.40 -7.83 9.53 -129.99 -1.24 -9.07 16 4 C 0.07 0.99 2.30 29.85 0.07 1.06 16 5 H 0.11 0.91 7.09 -2.39 -0.02 0.89 16 6 C -0.17 -1.20 9.10 71.98 0.65 -0.54 16 7 C 0.51 10.85 7.12 87.66 0.62 11.48 16 8 O -0.58 -18.94 15.92 15.95 0.25 -18.68 16 9 N -0.60 -9.18 2.97 -817.97 -2.43 -11.60 16 10 C 0.09 0.59 5.00 86.51 0.43 1.03 16 11 C -0.13 -1.26 6.10 30.82 0.19 -1.07 16 12 C -0.13 -2.05 5.46 30.62 0.17 -1.88 16 13 C 0.14 2.89 2.61 45.08 0.12 3.01 16 14 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 15 N -0.71 -16.38 5.08 -442.10 -2.25 -18.63 16 16 C 0.54 18.39 7.81 87.66 0.68 19.08 16 17 O -0.56 -23.96 15.52 -3.02 -0.05 -24.01 16 18 C -0.11 -4.16 6.16 71.23 0.44 -3.72 16 19 S -0.18 -8.94 18.55 -56.49 -1.05 -9.99 16 20 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 21 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 22 C 0.05 2.69 5.50 84.86 0.47 3.16 16 23 N -0.92 -55.96 13.97 21.65 0.30 -55.66 16 24 Si 0.91 45.29 27.74 68.60 1.90 47.19 16 25 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 28 C 0.11 1.97 5.90 86.38 0.51 2.48 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.08 0.48 7.87 -2.39 -0.02 0.47 16 34 H 0.10 0.18 5.39 -2.39 -0.01 0.17 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.30 7.87 -2.39 -0.02 0.28 16 37 H 0.11 0.17 8.14 -2.39 -0.02 0.16 16 38 H 0.12 0.17 4.65 -2.38 -0.01 0.16 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.42 6.75 8.60 -92.71 -0.80 5.95 16 44 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 45 H 0.12 3.96 8.14 -2.40 -0.02 3.94 16 46 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 47 H 0.07 1.73 7.01 -2.38 -0.02 1.71 16 48 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -87.19 398.26 1.82 -85.37 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.13 Total: 11.25 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 6.24 Total: 3.82 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -4.37 Total: -85.89 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -1.03 Total: -51.76 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.99 kcal Total: -87.19 1.82 -85.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356728892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.351 kcal (2) G-P(sol) polarization free energy of solvation -87.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds