Wall clock time and date at job start Sat Apr 11 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42891 * 109.47514 * 2 1 4 4 C 1.42904 * 114.00377 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46589 * 330.00001 * 4 3 2 6 6 C 1.52993 * 109.47081 * 89.99843 * 4 3 2 7 7 C 1.50698 * 109.47173 * 210.00507 * 4 3 2 8 8 O 1.21280 * 120.00434 * 351.88369 * 7 4 3 9 9 N 1.34779 * 120.00025 * 171.89059 * 7 4 3 10 10 C 1.46920 * 120.63299 * 175.13018 * 9 7 4 11 11 C 1.53185 * 108.89557 * 126.34139 * 10 9 7 12 12 C 1.53359 * 109.14875 * 54.58018 * 11 10 9 13 13 C 1.53040 * 109.60174 * 298.71123 * 12 11 10 14 14 H 1.08998 * 109.50402 * 301.42302 * 13 12 11 15 15 N 1.46508 * 109.49428 * 181.32307 * 13 12 11 16 16 C 1.34777 * 119.99461 * 85.16395 * 15 13 12 17 17 O 1.21280 * 120.00452 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99558 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.46925 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99854 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00004 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00210 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99501 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47306 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47230 * 119.99990 * 24 22 20 27 27 H 1.48502 * 109.47320 * 240.00101 * 24 22 20 28 28 C 1.46931 * 120.62971 * 355.15491 * 9 7 4 29 29 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46681 * 300.00147 * 1 2 3 31 31 H 1.09003 * 109.47377 * 59.99413 * 1 2 3 32 32 H 1.09007 * 109.46681 * 239.99853 * 2 1 3 33 33 H 1.09003 * 109.47377 * 120.00587 * 2 1 3 34 34 H 1.09001 * 109.47768 * 306.52786 * 6 4 3 35 35 H 1.08997 * 109.47177 * 66.53203 * 6 4 3 36 36 H 1.09001 * 109.47119 * 186.52564 * 6 4 3 37 37 H 1.09000 * 109.58718 * 246.20025 * 10 9 7 38 38 H 1.08997 * 109.58840 * 6.48115 * 10 9 7 39 39 H 1.08996 * 109.50195 * 174.65626 * 11 10 9 40 40 H 1.08999 * 109.49771 * 294.75974 * 11 10 9 41 41 H 1.08996 * 109.41782 * 178.67968 * 12 11 10 42 42 H 1.09000 * 109.42040 * 58.74860 * 12 11 10 43 43 H 0.96997 * 120.00275 * 265.16485 * 15 13 12 44 44 H 1.09009 * 109.46963 * 300.00023 * 18 16 15 45 45 H 1.08994 * 109.47228 * 59.99716 * 18 16 15 46 46 H 0.97001 * 119.99322 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.58250 * 353.37216 * 28 9 7 48 48 H 1.08999 * 109.58887 * 113.79505 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8636 0.6013 0.5130 6 6 3.9387 1.5004 -1.4432 7 6 3.8349 2.7261 0.7099 8 8 2.9907 3.5313 1.0413 9 7 5.1344 2.9637 0.9771 10 6 5.5552 4.2392 1.5726 11 6 6.3774 3.9511 2.8326 12 6 7.5337 3.0095 2.4743 13 6 6.9738 1.6866 1.9465 14 1 6.3331 1.2347 2.7036 15 7 8.0796 0.7774 1.6347 16 6 8.6155 0.0107 2.6050 17 8 8.1821 0.0731 3.7360 18 6 9.7533 -0.9241 2.2845 19 16 10.2480 -1.8087 3.7841 20 6 11.5530 -2.8006 3.1377 21 1 11.8158 -2.7329 2.0923 22 6 12.2440 -3.6681 3.9721 23 7 11.9241 -3.7502 5.2464 24 14 13.6280 -4.7191 3.2871 25 1 13.7892 -4.4416 1.8372 26 1 14.8923 -4.3962 3.9959 27 1 13.3031 -6.1548 3.4835 28 6 6.1573 1.9522 0.6779 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.5496 0.6413 -1.9897 35 1 3.6002 2.4193 -1.9219 36 1 5.0283 1.4696 -1.4459 37 1 6.1638 4.7930 0.8578 38 1 4.6760 4.8269 1.8365 39 1 6.7744 4.8854 3.2295 40 1 5.7421 3.4779 3.5813 41 1 8.1356 2.8203 3.3631 42 1 8.1542 3.4730 1.7073 43 1 8.4260 0.7273 0.7301 44 1 9.4324 -1.6414 1.5290 45 1 10.5988 -0.3505 1.9049 46 1 12.4068 -4.3568 5.8295 47 1 5.6752 1.0299 0.3538 48 1 6.8149 2.3195 -0.1099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356728893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:54 Heat of formation + Delta-G solvation = -122.907901 kcal Electronic energy + Delta-G solvation = -28098.948531 eV Core-core repulsion = 24087.120311 eV Total energy + Delta-G solvation = -4011.828220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90095 -39.49015 -38.33132 -37.26783 -34.45487 -33.64061 -32.47491 -32.16692 -30.81450 -30.25348 -28.42451 -26.34074 -25.53546 -24.39417 -23.31807 -22.89031 -21.27559 -20.49950 -19.42478 -17.99010 -17.79366 -17.15064 -16.65999 -16.32558 -16.07286 -15.76544 -15.26967 -15.17054 -14.84925 -14.78231 -14.45612 -14.07773 -14.03600 -13.80729 -13.50961 -13.30294 -13.22503 -12.96054 -12.79744 -12.62330 -12.58316 -12.35097 -12.16962 -11.76855 -11.74905 -11.46365 -11.40931 -11.14706 -11.10635 -11.09066 -11.06516 -10.79802 -10.25445 -9.86073 -9.77095 -9.51356 -9.20368 -9.11549 -8.90312 -8.29116 -6.55644 -6.26547 -3.97517 2.21335 2.29826 2.93223 2.98074 3.18026 3.22900 3.27475 3.39143 3.64490 4.07099 4.15547 4.28986 4.37184 4.46514 4.55158 4.69657 4.72553 4.75417 4.84685 4.85883 5.00249 5.01113 5.03082 5.06445 5.08933 5.21098 5.24294 5.36295 5.38167 5.51064 5.54177 5.55172 5.57965 5.64781 5.75694 5.79382 5.80919 5.98746 6.04605 6.07301 6.08362 6.48897 6.68591 6.97367 7.54769 7.56983 7.82241 8.30554 8.49718 9.19057 10.80893 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.002187 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.200769 B =12801.737435 C =13958.837779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.069 3.931 5 H 0.087 0.913 6 C -0.172 4.172 7 C 0.521 3.479 8 O -0.517 6.517 9 N -0.607 5.607 10 C 0.111 3.889 11 C -0.132 4.132 12 C -0.132 4.132 13 C 0.133 3.867 14 H 0.093 0.907 15 N -0.735 5.735 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.098 3.902 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.398 0.602 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.091 0.909 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.414 12.364 -15.193 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.277 6.277 4 C 0.008 3.992 5 H 0.105 0.895 6 C -0.230 4.230 7 C 0.308 3.692 8 O -0.391 6.391 9 N -0.343 5.343 10 C -0.011 4.011 11 C -0.170 4.170 12 C -0.171 4.171 13 C 0.027 3.973 14 H 0.111 0.889 15 N -0.390 5.390 16 C 0.321 3.679 17 O -0.386 6.386 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 C -0.026 4.026 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.726 12.975 -12.940 24.811 hybrid contribution 1.936 -1.120 -2.156 3.106 sum -14.790 11.856 -15.096 24.232 Atomic orbital electron populations 1.21727 0.93281 1.02364 1.03374 1.22634 0.96069 0.83289 1.00371 1.88041 1.18080 1.26611 1.94962 1.21889 0.84022 0.96482 0.96813 0.89527 1.22293 1.01851 1.04052 0.94796 1.20373 0.81800 0.88036 0.78985 1.90714 1.49414 1.47585 1.51366 1.47912 1.05924 1.17317 1.63149 1.21686 0.99966 0.84709 0.94762 1.21948 0.97224 1.00390 0.97475 1.22005 0.98032 0.94629 1.02388 1.21173 0.88638 0.90609 0.96915 0.88874 1.45969 1.36903 1.43238 1.12862 1.20338 0.83217 0.79684 0.84698 1.90717 1.60941 1.66194 1.20759 1.23534 0.98310 1.00833 1.07722 1.85433 1.43564 1.48261 1.06116 1.22897 1.20204 1.27134 0.98118 0.90859 1.25003 0.97455 0.96529 0.94651 1.70029 1.40062 1.36157 1.03976 0.86110 0.80776 0.79595 0.78971 1.19619 1.20555 1.20548 1.22070 0.91019 0.92297 0.97176 0.90870 0.91635 0.91779 0.93056 0.92972 0.90880 0.91094 0.90656 0.91151 0.88703 0.90060 0.91051 0.90376 0.91478 0.76767 0.89170 0.89145 0.92200 0.89075 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.42 6.47 37.16 0.24 0.66 16 3 O -0.36 -3.98 9.53 -55.01 -0.52 -4.50 16 4 C 0.07 0.63 2.29 -27.89 -0.06 0.57 16 5 H 0.09 0.66 6.68 -51.93 -0.35 0.32 16 6 C -0.17 -1.12 9.21 37.15 0.34 -0.78 16 7 C 0.52 5.94 7.05 -10.99 -0.08 5.87 16 8 O -0.52 -7.98 15.94 -14.22 -0.23 -8.21 16 9 N -0.61 -5.49 2.97 -172.77 -0.51 -6.01 16 10 C 0.11 0.94 6.43 -3.72 -0.02 0.91 16 11 C -0.13 -1.14 6.11 -26.45 -0.16 -1.31 16 12 C -0.13 -1.29 5.46 -26.52 -0.14 -1.43 16 13 C 0.13 1.35 2.61 -67.81 -0.18 1.17 16 14 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 15 N -0.74 -8.17 5.08 -53.68 -0.27 -8.44 16 16 C 0.53 9.01 7.81 -10.98 -0.09 8.93 16 17 O -0.51 -10.86 15.52 5.56 0.09 -10.77 16 18 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 20 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 23 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 24 Si 0.92 20.93 29.55 -169.99 -5.02 15.91 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.10 0.70 4.60 -3.71 -0.02 0.69 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.32 7.76 -51.93 -0.40 -0.08 16 33 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.07 0.40 7.76 -51.93 -0.40 0.00 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.36 6.16 -51.93 -0.32 0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.93 7.00 -51.93 -0.36 0.57 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.40 3.10 8.60 -40.82 -0.35 2.75 16 44 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 45 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.09 0.55 4.97 -51.93 -0.26 0.30 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -36.68 401.59 -9.14 -45.82 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.88 Total: -0.50 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 0.63 Total: -0.62 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.05 Total: -39.39 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.66 Total: -23.48 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.68 -9.14 -45.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356728893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.083 kcal (2) G-P(sol) polarization free energy of solvation -36.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds