Wall clock time and date at job start Sat Apr 11 2020 07:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42891 * 109.47514 * 2 1 4 4 C 1.42904 * 114.00377 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46589 * 330.00001 * 4 3 2 6 6 C 1.52993 * 109.47081 * 89.99843 * 4 3 2 7 7 C 1.50698 * 109.47173 * 210.00507 * 4 3 2 8 8 O 1.21280 * 120.00434 * 351.88369 * 7 4 3 9 9 N 1.34779 * 120.00025 * 171.89059 * 7 4 3 10 10 C 1.46920 * 120.63299 * 175.13018 * 9 7 4 11 11 C 1.53185 * 108.89557 * 126.34139 * 10 9 7 12 12 C 1.53359 * 109.14875 * 54.58018 * 11 10 9 13 13 C 1.53040 * 109.60174 * 298.71123 * 12 11 10 14 14 H 1.08998 * 109.50402 * 301.42302 * 13 12 11 15 15 N 1.46508 * 109.49428 * 181.32307 * 13 12 11 16 16 C 1.34777 * 119.99461 * 85.16395 * 15 13 12 17 17 O 1.21280 * 120.00452 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99558 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.46925 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99854 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00004 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00210 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99501 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47306 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47230 * 119.99990 * 24 22 20 27 27 H 1.48502 * 109.47320 * 240.00101 * 24 22 20 28 28 C 1.46931 * 120.62971 * 355.15491 * 9 7 4 29 29 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46681 * 300.00147 * 1 2 3 31 31 H 1.09003 * 109.47377 * 59.99413 * 1 2 3 32 32 H 1.09007 * 109.46681 * 239.99853 * 2 1 3 33 33 H 1.09003 * 109.47377 * 120.00587 * 2 1 3 34 34 H 1.09001 * 109.47768 * 306.52786 * 6 4 3 35 35 H 1.08997 * 109.47177 * 66.53203 * 6 4 3 36 36 H 1.09001 * 109.47119 * 186.52564 * 6 4 3 37 37 H 1.09000 * 109.58718 * 246.20025 * 10 9 7 38 38 H 1.08997 * 109.58840 * 6.48115 * 10 9 7 39 39 H 1.08996 * 109.50195 * 174.65626 * 11 10 9 40 40 H 1.08999 * 109.49771 * 294.75974 * 11 10 9 41 41 H 1.08996 * 109.41782 * 178.67968 * 12 11 10 42 42 H 1.09000 * 109.42040 * 58.74860 * 12 11 10 43 43 H 0.96997 * 120.00275 * 265.16485 * 15 13 12 44 44 H 1.09009 * 109.46963 * 300.00023 * 18 16 15 45 45 H 1.08994 * 109.47228 * 59.99716 * 18 16 15 46 46 H 0.97001 * 119.99322 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.58250 * 353.37216 * 28 9 7 48 48 H 1.08999 * 109.58887 * 113.79505 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8636 0.6013 0.5130 6 6 3.9387 1.5004 -1.4432 7 6 3.8349 2.7261 0.7099 8 8 2.9907 3.5313 1.0413 9 7 5.1344 2.9637 0.9771 10 6 5.5552 4.2392 1.5726 11 6 6.3774 3.9511 2.8326 12 6 7.5337 3.0095 2.4743 13 6 6.9738 1.6866 1.9465 14 1 6.3331 1.2347 2.7036 15 7 8.0796 0.7774 1.6347 16 6 8.6155 0.0107 2.6050 17 8 8.1821 0.0731 3.7360 18 6 9.7533 -0.9241 2.2845 19 16 10.2480 -1.8087 3.7841 20 6 11.5530 -2.8006 3.1377 21 1 11.8158 -2.7329 2.0923 22 6 12.2440 -3.6681 3.9721 23 7 11.9241 -3.7502 5.2464 24 14 13.6280 -4.7191 3.2871 25 1 13.7892 -4.4416 1.8372 26 1 14.8923 -4.3962 3.9959 27 1 13.3031 -6.1548 3.4835 28 6 6.1573 1.9522 0.6779 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.5496 0.6413 -1.9897 35 1 3.6002 2.4193 -1.9219 36 1 5.0283 1.4696 -1.4459 37 1 6.1638 4.7930 0.8578 38 1 4.6760 4.8269 1.8365 39 1 6.7744 4.8854 3.2295 40 1 5.7421 3.4779 3.5813 41 1 8.1356 2.8203 3.3631 42 1 8.1542 3.4730 1.7073 43 1 8.4260 0.7273 0.7301 44 1 9.4324 -1.6414 1.5290 45 1 10.5988 -0.3505 1.9049 46 1 12.4068 -4.3568 5.8295 47 1 5.6752 1.0299 0.3538 48 1 6.8149 2.3195 -0.1099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356728893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:53 Heat of formation + Delta-G solvation = -148.881003 kcal Electronic energy + Delta-G solvation = -28100.074809 eV Core-core repulsion = 24087.120311 eV Total energy + Delta-G solvation = -4012.954498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.72839 -40.65366 -39.13383 -38.22210 -35.54186 -34.56679 -34.38337 -32.85969 -31.88667 -30.92634 -29.61848 -27.63789 -27.06921 -25.04579 -24.08659 -23.58206 -22.18043 -21.60034 -20.29862 -19.77527 -18.56610 -18.08262 -17.67119 -17.49433 -16.87165 -16.83242 -16.56926 -16.43110 -16.11369 -15.82159 -15.50172 -15.32727 -14.92708 -14.67908 -14.49985 -14.41267 -14.20363 -13.92923 -13.65973 -13.55417 -13.34146 -13.21114 -13.13940 -12.91786 -12.91018 -12.58686 -12.51039 -12.37595 -12.22268 -12.07972 -11.98909 -11.88589 -11.68753 -11.14632 -11.01265 -10.92676 -10.52947 -10.23743 -10.18559 -9.76728 -8.64528 -8.33490 -6.10874 1.25313 1.38819 1.42537 1.48528 1.55959 1.62414 1.66877 2.25555 2.30261 2.78081 3.01155 3.31318 3.38397 3.60465 3.64480 3.83288 3.91547 3.93790 3.97039 4.07412 4.15951 4.23554 4.28577 4.34440 4.37311 4.45423 4.46711 4.56134 4.58423 4.67186 4.72518 4.78992 4.83406 4.86754 4.95424 4.99049 5.14078 5.17927 5.23256 5.24129 5.35044 5.44126 5.49845 6.02333 6.21665 6.24619 6.53530 7.00667 7.08482 7.28245 8.75789 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.002187 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.200769 B =12801.737435 C =13958.837779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.391 6.391 4 C 0.066 3.934 5 H 0.102 0.898 6 C -0.166 4.166 7 C 0.514 3.486 8 O -0.569 6.569 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.125 4.125 12 C -0.127 4.127 13 C 0.133 3.867 14 H 0.060 0.940 15 N -0.703 5.703 16 C 0.537 3.463 17 O -0.564 6.564 18 C -0.128 4.128 19 S -0.157 6.157 20 C -0.542 4.542 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.254 1.254 26 H -0.276 1.276 27 H -0.276 1.276 28 C 0.103 3.897 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.421 0.579 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.270 0.730 47 H 0.108 0.892 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.083 12.177 -18.978 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.310 6.310 4 C 0.005 3.995 5 H 0.119 0.881 6 C -0.223 4.223 7 C 0.303 3.697 8 O -0.447 6.447 9 N -0.336 5.336 10 C -0.011 4.011 11 C -0.163 4.163 12 C -0.166 4.166 13 C 0.027 3.973 14 H 0.078 0.922 15 N -0.358 5.358 16 C 0.323 3.677 17 O -0.442 6.442 18 C -0.279 4.279 19 S 0.070 5.930 20 C -0.689 4.689 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.201 1.201 28 C -0.020 4.020 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.113 0.887 43 H 0.260 0.740 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.079 0.921 47 H 0.126 0.874 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.377 12.803 -16.795 26.123 hybrid contribution 1.448 -0.967 -0.991 2.003 sum -13.928 11.836 -17.785 25.503 Atomic orbital electron populations 1.21762 0.92996 1.03445 1.02542 1.22824 0.96458 0.82296 1.01374 1.88011 1.19352 1.28419 1.95210 1.22078 0.83503 0.95505 0.98421 0.88065 1.22290 1.03278 1.04086 0.92643 1.20937 0.81943 0.88336 0.78521 1.90687 1.50886 1.49418 1.53682 1.47980 1.05718 1.17714 1.62196 1.21741 0.99510 0.84665 0.95165 1.21885 0.96554 1.00693 0.97213 1.21955 0.98169 0.94695 1.01796 1.21212 0.88007 0.90070 0.97978 0.92201 1.45567 1.36052 1.41443 1.12745 1.20060 0.82836 0.79976 0.84791 1.90717 1.62457 1.67912 1.23128 1.23368 0.99781 1.01056 1.03717 1.85656 1.44451 1.50173 1.12736 1.23235 1.20084 1.27025 0.98599 0.89691 1.26132 1.00337 0.98004 0.94867 1.70199 1.41725 1.37311 1.05683 0.84913 0.76816 0.77328 0.78944 1.17785 1.20183 1.20107 1.22220 0.90760 0.92923 0.96121 0.88818 0.93170 0.91897 0.90902 0.92968 0.89510 0.92261 0.88227 0.88194 0.90459 0.88437 0.93581 0.93631 0.88714 0.74043 0.86779 0.86969 0.92106 0.87401 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.69 6.47 71.98 0.47 1.16 16 3 O -0.39 -8.51 9.53 -130.07 -1.24 -9.75 16 4 C 0.07 1.10 2.29 29.84 0.07 1.17 16 5 H 0.10 1.33 6.68 -2.38 -0.02 1.31 16 6 C -0.17 -1.65 9.21 71.98 0.66 -0.98 16 7 C 0.51 11.37 7.05 87.66 0.62 11.99 16 8 O -0.57 -18.09 15.94 15.88 0.25 -17.83 16 9 N -0.60 -9.72 2.97 -818.92 -2.43 -12.16 16 10 C 0.11 1.70 6.43 86.36 0.56 2.26 16 11 C -0.12 -2.08 6.11 30.78 0.19 -1.89 16 12 C -0.13 -2.28 5.46 30.73 0.17 -2.12 16 13 C 0.13 2.44 2.61 45.07 0.12 2.55 16 14 H 0.06 1.55 7.58 -2.39 -0.02 1.54 16 15 N -0.70 -13.54 5.08 -442.15 -2.25 -15.79 16 16 C 0.54 17.50 7.81 87.66 0.69 18.19 16 17 O -0.56 -24.49 15.52 -3.03 -0.05 -24.54 16 18 C -0.13 -4.56 6.16 71.24 0.44 -4.12 16 19 S -0.16 -8.39 20.57 -56.49 -1.16 -9.55 16 20 C -0.54 -29.79 9.50 67.95 0.65 -29.15 16 21 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.62 5.49 84.86 0.47 1.09 16 23 N -0.91 -55.17 13.22 21.65 0.29 -54.88 16 24 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 25 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 28 C 0.10 1.08 4.60 86.36 0.40 1.48 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.75 7.76 -2.38 -0.02 0.73 16 33 H 0.05 0.75 8.09 -2.39 -0.02 0.73 16 34 H 0.09 0.65 7.76 -2.39 -0.02 0.63 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.47 6.16 -2.39 -0.01 0.45 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.52 7.00 -2.39 -0.02 1.50 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.42 4.46 8.60 -92.71 -0.80 3.67 16 44 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 45 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 46 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 47 H 0.11 0.84 4.97 -2.39 -0.01 0.83 16 48 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -86.06 401.59 1.82 -84.25 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.16 Total: 15.48 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 6.22 Total: 0.33 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -4.39 Total: -82.83 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -1.03 Total: -52.12 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -86.06 1.82 -84.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356728893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.634 kcal (2) G-P(sol) polarization free energy of solvation -86.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds