Wall clock time and date at job start Sat Apr 11 2020 07:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.46923 * 2 1 4 4 C 1.35973 * 116.99959 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.98188 * 359.71754 * 4 3 2 6 6 C 1.38098 * 120.01212 * 179.72891 * 5 4 3 7 7 C 1.38846 * 119.98314 * 0.57441 * 6 5 4 8 8 N 1.40104 * 120.01629 * 179.68001 * 7 6 5 9 9 C 1.46497 * 119.99808 * 67.91206 * 8 7 6 10 10 C 1.50704 * 109.47159 * 90.00530 * 9 8 7 11 11 H 1.08004 * 120.00022 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00252 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99717 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99975 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47045 * 89.99820 * 14 12 10 16 16 H 1.48503 * 109.46877 * 209.99794 * 14 12 10 17 17 H 1.48501 * 109.46873 * 329.99568 * 14 12 10 18 18 C 1.34775 * 120.00002 * 247.91688 * 8 7 6 19 19 O 1.21292 * 120.00322 * 4.73346 * 18 8 7 20 20 C 1.50710 * 119.99895 * 184.73746 * 18 8 7 21 21 N 1.46501 * 109.47033 * 180.02562 * 20 18 8 22 22 N 1.40069 * 126.03557 * 269.68634 * 21 20 18 23 23 C 1.30845 * 108.38248 * 179.81621 * 22 21 20 24 24 C 1.39772 * 108.32402 * 0.44073 * 23 22 21 25 25 C 1.35242 * 126.04325 * 89.99665 * 21 20 18 26 26 N 1.39203 * 126.22381 * 0.02562 * 25 21 20 27 27 C 1.38850 * 119.96884 * 359.70482 * 7 6 5 28 28 C 1.38082 * 119.98633 * 359.97438 * 27 7 6 29 29 H 1.08996 * 109.47155 * 59.99886 * 1 2 3 30 30 H 1.08993 * 109.46514 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46652 * 300.00126 * 1 2 3 32 32 H 1.09002 * 109.47026 * 239.99981 * 2 1 3 33 33 H 1.08996 * 109.47155 * 120.00114 * 2 1 3 34 34 H 1.07998 * 119.99505 * 359.97438 * 5 4 3 35 35 H 1.07994 * 120.00967 * 180.27658 * 6 5 4 36 36 H 1.08998 * 109.47259 * 210.00127 * 9 8 7 37 37 H 1.09000 * 109.47643 * 330.00261 * 9 8 7 38 38 H 0.97000 * 120.00096 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.46802 * 299.99500 * 20 18 8 40 40 H 1.08992 * 109.47160 * 59.99756 * 20 18 8 41 41 H 1.07996 * 125.83517 * 180.16052 * 23 22 21 42 42 H 1.07999 * 126.09244 * 179.69523 * 24 23 22 43 43 H 0.97001 * 119.99933 * 359.97438 * 26 25 21 44 44 H 0.97001 * 120.00065 * 180.02562 * 26 25 21 45 45 H 1.08003 * 120.00640 * 180.02562 * 27 7 6 46 46 H 1.08004 * 119.98974 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1991 0.4251 0.0049 6 6 5.5682 0.6054 -0.0013 7 6 6.0992 1.8883 -0.0009 8 7 7.4882 2.0719 -0.0005 9 6 8.2772 1.6952 -1.1759 10 6 8.3755 2.8713 -2.1130 11 1 7.8976 3.8059 -1.8586 12 6 9.0746 2.7541 -3.2956 13 7 9.6561 1.6160 -3.6056 14 14 9.1958 4.2118 -4.4574 15 1 10.3954 5.0179 -4.1167 16 1 9.3086 3.7227 -5.8551 17 1 7.9795 5.0534 -4.3242 18 6 8.0984 2.5951 1.0814 19 8 7.4588 2.8270 2.0856 20 6 9.5754 2.8919 1.0434 21 7 9.9947 3.4496 2.3317 22 7 10.0167 4.8077 2.6737 23 6 10.4447 4.9161 3.9054 24 6 10.7203 3.6341 4.3893 25 6 10.4344 2.7445 3.3987 26 7 10.5706 1.3610 3.4711 27 6 5.2531 2.9892 -0.0005 28 6 3.8842 2.8075 -0.0010 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.7859 -0.5727 0.0099 35 1 6.2258 -0.2513 -0.0017 36 1 9.2773 1.3965 -0.8617 37 1 7.7932 0.8629 -1.6869 38 1 10.1476 1.5333 -4.4377 39 1 10.1262 1.9714 0.8499 40 1 9.7811 3.6118 0.2513 41 1 10.5685 5.8387 4.4529 42 1 11.0938 3.3921 5.3734 43 1 10.3393 0.8103 2.7068 44 1 10.8960 0.9477 4.2860 45 1 5.6655 3.9873 -0.0006 46 1 3.2260 3.6638 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361907944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:06 Heat of formation + Delta-G solvation = 24.999834 kcal Electronic energy + Delta-G solvation = -29904.161834 eV Core-core repulsion = 25795.596174 eV Total energy + Delta-G solvation = -4108.565660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20888 -41.48196 -40.53668 -38.46272 -36.59624 -35.50305 -34.58934 -34.04341 -32.72441 -31.96984 -30.40965 -29.19072 -29.08368 -27.92299 -25.23370 -24.88638 -23.71925 -22.80251 -22.18944 -21.60473 -20.42488 -19.30931 -18.81578 -18.62023 -18.18371 -17.71564 -17.19704 -17.05378 -17.00837 -16.43941 -16.27164 -15.78355 -15.59036 -15.36476 -14.89480 -14.55758 -14.44567 -14.39823 -14.32177 -14.20523 -13.88875 -13.77606 -13.49522 -13.23738 -13.14258 -12.99954 -12.87928 -12.67955 -12.63707 -12.18893 -11.97289 -11.95579 -11.70879 -11.61110 -11.43894 -11.22722 -10.64316 -10.06019 -9.99995 -9.82309 -8.95314 -8.62621 -8.25453 -6.39060 0.29459 0.30462 1.09401 1.38611 1.41031 1.43892 1.45339 1.51909 2.12726 2.15008 2.26097 2.39099 2.68879 2.87681 3.05834 3.50945 3.65591 3.78333 3.84837 4.08084 4.13353 4.16995 4.26116 4.29518 4.33767 4.38551 4.50488 4.63294 4.65497 4.84841 4.87724 4.92903 4.96171 5.03651 5.08681 5.13079 5.17895 5.29571 5.43777 5.53947 5.58104 5.65869 5.87871 5.94640 5.97521 6.33162 6.43397 6.54556 6.65248 6.70554 7.10902 7.13894 7.33275 8.79521 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007197 B = 0.004006 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.817704 B = 6987.166709 C = 9764.488599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.328 6.328 4 C 0.121 3.879 5 C -0.190 4.190 6 C -0.088 4.088 7 C 0.101 3.899 8 N -0.550 5.550 9 C 0.251 3.749 10 C -0.550 4.550 11 H 0.048 0.952 12 C 0.033 3.967 13 N -0.912 5.912 14 Si 0.947 3.053 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.504 3.496 19 O -0.567 6.567 20 C 0.131 3.869 21 N -0.392 5.392 22 N -0.352 5.352 23 C 0.070 3.930 24 C -0.360 4.360 25 C 0.363 3.637 26 N -0.843 5.843 27 C -0.085 4.085 28 C -0.149 4.149 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.138 0.862 36 H 0.045 0.955 37 H 0.030 0.970 38 H 0.270 0.730 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.211 0.789 42 H 0.169 0.831 43 H 0.402 0.598 44 H 0.428 0.572 45 H 0.109 0.891 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -6.705 10.240 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.243 6.243 4 C 0.075 3.925 5 C -0.209 4.209 6 C -0.107 4.107 7 C 0.011 3.989 8 N -0.278 5.278 9 C 0.132 3.868 10 C -0.589 4.589 11 H 0.066 0.934 12 C -0.169 4.169 13 N -0.550 5.550 14 Si 0.773 3.227 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.202 1.202 18 C 0.292 3.708 19 O -0.446 6.446 20 C 0.006 3.994 21 N -0.181 5.181 22 N -0.173 5.173 23 C -0.116 4.116 24 C -0.394 4.394 25 C 0.135 3.865 26 N -0.394 5.394 27 C -0.105 4.105 28 C -0.168 4.168 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.179 0.821 35 H 0.156 0.844 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.227 0.773 42 H 0.186 0.814 43 H 0.230 0.770 44 H 0.262 0.738 45 H 0.127 0.873 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.318 -5.905 9.467 13.344 hybrid contribution 0.643 -0.093 -0.441 0.786 sum -6.675 -5.998 9.026 12.728 Atomic orbital electron populations 1.21801 0.91206 1.04259 1.03177 1.23133 0.97099 0.80713 1.02432 1.86063 1.18009 1.31528 1.88672 1.18941 0.82970 0.93806 0.96761 1.21299 0.92655 0.99281 1.07633 1.21150 0.95604 0.95788 0.98196 1.17765 0.83242 0.93813 1.04110 1.45771 1.05120 1.60876 1.16013 1.19330 0.90667 0.95566 0.81215 1.21577 1.33965 0.98413 1.04896 0.93379 1.25464 0.94627 0.98068 0.98692 1.69953 1.34353 1.25573 1.25148 0.85719 0.78541 0.79932 0.78543 1.19812 1.20360 1.20224 1.21110 0.90657 0.76672 0.82391 1.90671 1.67488 1.53617 1.32831 1.21308 0.91824 1.02114 0.84181 1.47947 1.54553 1.04548 1.11036 1.77409 1.28611 0.93063 1.18210 1.24114 0.95773 0.99906 0.91776 1.20856 1.25443 0.91123 1.02013 1.18385 0.93853 0.85948 0.88271 1.41491 1.76842 1.00216 1.20824 1.21017 0.93121 0.98182 0.98163 1.20355 0.93857 0.96160 1.06405 0.91893 0.87958 0.91831 0.91051 0.90970 0.82101 0.84450 0.93707 0.95186 0.92113 0.84784 0.86064 0.77270 0.81354 0.76972 0.73811 0.87320 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.04 0.73 5.46 71.98 0.39 1.13 16 3 O -0.33 -8.81 10.14 -93.25 -0.95 -9.75 16 4 C 0.12 3.74 6.69 22.50 0.15 3.89 16 5 C -0.19 -5.51 9.03 22.35 0.20 -5.31 16 6 C -0.09 -3.02 9.68 22.38 0.22 -2.80 16 7 C 0.10 4.12 4.76 38.11 0.18 4.30 16 8 N -0.55 -23.21 2.51 -635.16 -1.59 -24.81 16 9 C 0.25 11.38 4.88 85.63 0.42 11.80 16 10 C -0.55 -27.96 9.16 25.60 0.23 -27.73 16 11 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 12 C 0.03 1.69 5.46 84.66 0.46 2.15 16 13 N -0.91 -47.88 13.29 21.45 0.28 -47.59 16 14 Si 0.95 41.65 29.54 68.60 2.03 43.68 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 C 0.50 21.29 7.60 87.66 0.67 21.95 16 19 O -0.57 -27.00 16.19 -3.07 -0.05 -27.05 16 20 C 0.13 4.93 5.40 85.64 0.46 5.39 16 21 N -0.39 -14.54 3.11 -348.91 -1.08 -15.62 16 22 N -0.35 -13.66 12.56 -57.09 -0.72 -14.38 16 23 C 0.07 2.16 12.01 85.21 1.02 3.19 16 24 C -0.36 -10.20 10.84 22.16 0.24 -9.96 16 25 C 0.36 11.23 7.97 131.43 1.05 12.28 16 26 N -0.84 -18.84 9.10 -55.51 -0.51 -19.35 16 27 C -0.09 -3.42 9.54 22.38 0.21 -3.20 16 28 C -0.15 -5.12 9.98 22.35 0.22 -4.89 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.16 7.67 -2.39 -0.02 1.14 16 33 H 0.07 1.14 7.65 -2.39 -0.02 1.12 16 34 H 0.16 3.43 6.29 -2.91 -0.02 3.41 16 35 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.05 1.96 6.47 -2.39 -0.02 1.95 16 37 H 0.03 1.44 7.86 -2.39 -0.02 1.42 16 38 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 39 H 0.13 4.25 6.61 -2.39 -0.02 4.24 16 40 H 0.12 4.96 7.91 -2.39 -0.02 4.94 16 41 H 0.21 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.40 8.56 8.09 -92.71 -0.75 7.81 16 44 H 0.43 6.68 8.96 -92.71 -0.83 5.85 16 45 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -70.61 394.84 3.74 -66.87 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.55 Total: 37.03 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 6.87 Total: 10.97 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -3.62 Total: -121.74 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.99 Total: -36.80 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.61 3.74 -66.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361907944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.872 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds