Wall clock time and date at job start Sat Apr 11 2020 07:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21282 * 119.99890 * 2 1 4 4 N 1.34773 * 120.00345 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00404 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47275 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.49705 * 304.99681 * 6 5 4 8 8 C 1.53042 * 109.49870 * 65.06290 * 6 5 4 9 9 C 1.53037 * 109.53468 * 181.31716 * 8 6 5 10 10 C 1.53184 * 109.31343 * 298.62962 * 9 8 6 11 11 N 1.46934 * 108.77517 * 54.64126 * 10 9 8 12 12 S 1.65601 * 120.63015 * 126.38699 * 11 10 9 13 13 O 1.42102 * 104.27496 * 206.07261 * 12 11 10 14 14 O 1.42093 * 104.27899 * 333.92962 * 12 11 10 15 15 C 1.81401 * 104.44686 * 90.00214 * 12 11 10 16 16 C 1.52998 * 109.46782 * 173.98119 * 15 12 11 17 17 C 1.50700 * 115.55247 * 65.20102 * 16 15 12 18 18 H 1.08000 * 119.99974 * 264.78485 * 17 16 15 19 19 C 1.37876 * 120.00120 * 84.77904 * 17 16 15 20 20 N 1.31518 * 119.99909 * 352.23716 * 19 17 16 21 21 Si 1.86804 * 120.00051 * 172.22883 * 19 17 16 22 22 H 1.48501 * 109.46436 * 90.00260 * 21 19 17 23 23 H 1.48495 * 109.47253 * 209.99885 * 21 19 17 24 24 H 1.48496 * 109.47173 * 330.00587 * 21 19 17 25 25 C 1.53005 * 117.50171 * 279.52622 * 16 15 12 26 26 C 1.53008 * 117.49706 * 210.87048 * 16 15 12 27 27 C 1.46934 * 118.76008 * 306.40954 * 11 10 9 28 28 H 1.09003 * 109.47678 * 270.00255 * 1 2 3 29 29 H 1.08997 * 109.47331 * 30.00423 * 1 2 3 30 30 H 1.08999 * 109.47335 * 150.00574 * 1 2 3 31 31 H 0.97004 * 119.99973 * 359.97438 * 4 2 1 32 32 H 1.08995 * 109.47128 * 59.99394 * 5 4 2 33 33 H 1.09005 * 109.46479 * 299.99810 * 5 4 2 34 34 H 1.08998 * 109.45577 * 301.33702 * 8 6 5 35 35 H 1.09002 * 109.45825 * 61.31026 * 8 6 5 36 36 H 1.08997 * 109.50064 * 58.58839 * 9 8 6 37 37 H 1.09005 * 109.49186 * 178.68598 * 9 8 6 38 38 H 1.09006 * 109.58696 * 174.42599 * 10 9 8 39 39 H 1.08998 * 109.59436 * 294.70886 * 10 9 8 40 40 H 1.08996 * 109.47462 * 293.97773 * 15 12 11 41 41 H 1.09000 * 109.47404 * 53.98368 * 15 12 11 42 42 H 0.96999 * 119.99940 * 185.02907 * 20 19 17 43 43 H 1.08999 * 117.49580 * 0.02562 * 25 16 15 44 44 H 1.09002 * 117.49989 * 145.01984 * 25 16 15 45 45 H 1.09003 * 117.49423 * 214.97964 * 26 16 15 46 46 H 1.08991 * 117.50022 * 359.97330 * 26 16 15 47 47 H 1.08998 * 109.56234 * 293.78339 * 27 11 10 48 48 H 1.09007 * 109.61350 * 173.35768 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6096 0.0010 7 1 3.7213 -3.1492 0.8424 8 6 3.7532 -3.2937 -1.3075 9 6 4.2345 -4.7464 -1.2946 10 6 5.7622 -4.7730 -1.1855 11 7 6.1658 -3.9933 -0.0073 12 16 7.1463 -4.6588 1.1495 13 8 6.8276 -3.9413 2.3340 14 8 6.9053 -6.0557 1.0519 15 6 8.8288 -4.2630 0.5988 16 6 9.8314 -4.6985 1.6694 17 6 9.9151 -6.1827 1.9163 18 1 9.3412 -6.6307 2.7140 19 6 10.7243 -6.9688 1.1237 20 7 11.3031 -6.4545 0.0606 21 14 10.9989 -8.7643 1.5599 22 1 9.9630 -9.5982 0.8989 23 1 12.3447 -9.1865 1.0955 24 1 10.9069 -8.9357 3.0321 25 6 10.0313 -3.7704 2.8693 26 6 11.1215 -3.8865 1.8011 27 6 5.6827 -2.6120 0.1257 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6959 -2.0072 0.0013 32 1 4.0089 -0.6531 0.8910 33 1 4.0095 -0.6535 -0.8890 34 1 2.6683 -3.2714 -1.4099 35 1 4.2082 -2.7680 -2.1470 36 1 3.7995 -5.2662 -0.4410 37 1 3.9270 -5.2396 -2.2169 38 1 6.1028 -5.8027 -1.0764 39 1 6.2005 -4.3364 -2.0829 40 1 9.0398 -4.7895 -0.3320 41 1 8.9147 -3.1887 0.4362 42 1 11.8127 -7.0235 -0.5373 43 1 9.4483 -2.8498 2.8962 44 1 10.2237 -4.2334 3.8372 45 1 12.0307 -4.4259 2.0666 46 1 11.2562 -3.0425 1.1248 47 1 6.1148 -1.9967 -0.6634 48 1 5.9704 -2.2160 1.0997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363948033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:10 Heat of formation + Delta-G solvation = -97.329176 kcal Electronic energy + Delta-G solvation = -29246.086665 eV Core-core repulsion = 25235.367621 eV Total energy + Delta-G solvation = -4010.719043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.98979 -38.63706 -36.77332 -36.36375 -35.29470 -35.05848 -32.43946 -32.06318 -31.76203 -29.92690 -28.16697 -25.93643 -25.49756 -24.46053 -22.26224 -21.22997 -20.87479 -20.29990 -19.55378 -18.29539 -17.32769 -16.98011 -16.45204 -16.39121 -15.80714 -15.53320 -15.15749 -14.73696 -14.69099 -14.42320 -14.11780 -14.02615 -13.80344 -13.71658 -13.24974 -13.05848 -13.01089 -12.90510 -12.34178 -12.24199 -11.96804 -11.85136 -11.56778 -11.39581 -11.28892 -11.11986 -11.05295 -11.02199 -10.95853 -10.60918 -10.59099 -10.51008 -10.44734 -10.16035 -10.13302 -9.73661 -9.33988 -8.98428 -8.85164 -8.58267 -8.08853 -6.16052 -4.26660 0.99224 2.38751 2.94685 3.28799 3.29122 3.34427 3.39552 4.35146 4.38570 4.51894 4.53550 4.57730 4.67850 4.84340 4.90026 5.03255 5.03648 5.08260 5.12423 5.18654 5.19479 5.25389 5.39593 5.44285 5.48744 5.63172 5.65579 5.69363 5.78648 5.83416 5.90007 5.93269 5.99610 6.13619 6.21331 6.25146 6.29397 6.37864 6.59825 6.70504 6.80223 6.97993 7.21792 7.23234 7.37580 7.78225 7.95477 8.18468 8.78747 9.44479 10.91600 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.002781 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.003260 B =10065.775427 C =10707.457648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.549 6.549 4 N -0.728 5.728 5 C 0.122 3.878 6 C -0.113 4.113 7 H 0.084 0.916 8 C -0.111 4.111 9 C -0.131 4.131 10 C 0.116 3.884 11 N -1.010 6.010 12 S 2.605 3.395 13 O -0.971 6.971 14 O -0.947 6.947 15 C -0.553 4.553 16 C 0.043 3.957 17 C -0.516 4.516 18 H 0.068 0.932 19 C 0.082 3.918 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.208 4.208 26 C -0.141 4.141 27 C 0.126 3.874 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.401 0.599 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.263 0.737 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.726 8.079 -5.541 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.426 6.426 4 N -0.381 5.381 5 C -0.002 4.002 6 C -0.133 4.133 7 H 0.102 0.898 8 C -0.149 4.149 9 C -0.170 4.170 10 C -0.010 4.010 11 N -0.845 5.845 12 S 2.704 3.296 13 O -0.961 6.961 14 O -0.938 6.938 15 C -0.686 4.686 16 C 0.040 3.960 17 C -0.553 4.553 18 H 0.086 0.914 19 C -0.123 4.123 20 N -0.510 5.510 21 Si 0.718 3.282 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.245 4.245 26 C -0.180 4.180 27 C 0.000 4.000 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.236 0.764 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.429 8.317 -4.918 19.928 hybrid contribution 0.437 -1.076 -0.500 1.265 sum -16.992 7.241 -5.417 19.249 Atomic orbital electron populations 1.21882 0.91766 1.04797 1.04803 1.20811 0.90608 0.83485 0.75626 1.90738 1.70859 1.31447 1.49580 1.46113 1.07625 1.08776 1.75591 1.21372 0.79478 0.96510 1.02859 1.21740 0.97050 0.94926 0.99585 0.89757 1.21553 1.00342 0.96032 0.96930 1.21859 0.96138 0.96499 1.02521 1.21401 0.94912 0.96950 0.87708 1.58135 1.65254 1.22089 1.39029 1.05281 0.76757 0.74119 0.73445 1.93481 1.83502 1.74473 1.44658 1.93522 1.84327 1.30411 1.85491 1.30021 1.19582 1.07522 1.11451 1.18290 0.94150 0.92986 0.90546 1.20518 1.27724 0.89382 1.17711 0.91400 1.24958 0.94140 0.98675 0.94554 1.69980 1.33024 1.35640 1.12358 0.86582 0.77537 0.84683 0.79400 1.20028 1.21050 1.19420 1.23197 1.04947 1.01216 0.95170 1.22554 0.94155 1.00998 1.00333 1.21253 0.92629 0.82945 1.03221 0.88844 0.88940 0.90239 0.76421 0.90909 0.91059 0.92045 0.91461 0.91317 0.90820 0.88464 0.91687 0.84872 0.88420 0.92717 0.90682 0.89533 0.89580 0.91520 0.91385 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.30 36.00 0.37 -0.53 16 2 C 0.51 4.81 7.94 -10.99 -0.09 4.72 16 3 O -0.55 -7.85 17.10 5.56 0.09 -7.76 16 4 N -0.73 -5.72 5.27 -60.30 -0.32 -6.04 16 5 C 0.12 1.13 5.07 -4.04 -0.02 1.11 16 6 C -0.11 -1.08 2.37 -90.50 -0.21 -1.30 16 7 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 8 C -0.11 -0.91 5.06 -26.69 -0.13 -1.05 16 9 C -0.13 -1.29 6.08 -26.62 -0.16 -1.45 16 10 C 0.12 1.46 6.43 -3.71 -0.02 1.43 16 11 N -1.01 -14.67 3.22 -113.51 -0.37 -15.04 16 12 S 2.60 51.39 5.19 -107.50 -0.56 50.84 16 13 O -0.97 -20.62 16.59 -57.54 -0.95 -21.57 16 14 O -0.95 -21.88 16.25 -57.54 -0.93 -22.82 16 15 C -0.55 -11.46 6.03 37.16 0.22 -11.23 16 16 C 0.04 1.03 1.32 -155.65 -0.21 0.83 16 17 C -0.52 -14.04 8.18 -34.44 -0.28 -14.32 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C 0.08 2.21 5.38 -17.82 -0.10 2.12 16 20 N -0.87 -23.89 12.98 55.43 0.72 -23.17 16 21 Si 0.89 21.20 29.55 -169.99 -5.02 16.18 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.21 -4.55 9.96 -26.69 -0.27 -4.81 16 26 C -0.14 -3.21 9.49 -26.69 -0.25 -3.46 16 27 C 0.13 1.50 5.72 -3.71 -0.02 1.48 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.40 2.11 7.66 -40.82 -0.31 1.80 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.39 7.16 -51.93 -0.37 0.02 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.39 6.86 -51.93 -0.36 1.03 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.13 2.88 8.14 -51.93 -0.42 2.46 16 41 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 42 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 45 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.10 1.23 6.86 -51.93 -0.36 0.87 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -34.92 399.83 -10.61 -45.53 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.13 Total: 4.27 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -1.17 Total: -26.46 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.04 Total: -44.25 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -1.79 Total: -52.14 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.56 Total: 50.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.92 -10.61 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363948033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.795 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds