Wall clock time and date at job start Sat Apr 11 2020 07:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21282 * 119.99890 * 2 1 4 4 N 1.34773 * 120.00345 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00404 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47275 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.49705 * 304.99681 * 6 5 4 8 8 C 1.53042 * 109.49870 * 65.06290 * 6 5 4 9 9 C 1.53037 * 109.53468 * 181.31716 * 8 6 5 10 10 C 1.53184 * 109.31343 * 298.62962 * 9 8 6 11 11 N 1.46934 * 108.77517 * 54.64126 * 10 9 8 12 12 S 1.65601 * 120.63015 * 126.38699 * 11 10 9 13 13 O 1.42102 * 104.27496 * 206.07261 * 12 11 10 14 14 O 1.42093 * 104.27899 * 333.92962 * 12 11 10 15 15 C 1.81401 * 104.44686 * 90.00214 * 12 11 10 16 16 C 1.52998 * 109.46782 * 173.98119 * 15 12 11 17 17 C 1.50700 * 115.55247 * 65.20102 * 16 15 12 18 18 H 1.08000 * 119.99974 * 264.78485 * 17 16 15 19 19 C 1.37876 * 120.00120 * 84.77904 * 17 16 15 20 20 N 1.31518 * 119.99909 * 352.23716 * 19 17 16 21 21 Si 1.86804 * 120.00051 * 172.22883 * 19 17 16 22 22 H 1.48501 * 109.46436 * 90.00260 * 21 19 17 23 23 H 1.48495 * 109.47253 * 209.99885 * 21 19 17 24 24 H 1.48496 * 109.47173 * 330.00587 * 21 19 17 25 25 C 1.53005 * 117.50171 * 279.52622 * 16 15 12 26 26 C 1.53008 * 117.49706 * 210.87048 * 16 15 12 27 27 C 1.46934 * 118.76008 * 306.40954 * 11 10 9 28 28 H 1.09003 * 109.47678 * 270.00255 * 1 2 3 29 29 H 1.08997 * 109.47331 * 30.00423 * 1 2 3 30 30 H 1.08999 * 109.47335 * 150.00574 * 1 2 3 31 31 H 0.97004 * 119.99973 * 359.97438 * 4 2 1 32 32 H 1.08995 * 109.47128 * 59.99394 * 5 4 2 33 33 H 1.09005 * 109.46479 * 299.99810 * 5 4 2 34 34 H 1.08998 * 109.45577 * 301.33702 * 8 6 5 35 35 H 1.09002 * 109.45825 * 61.31026 * 8 6 5 36 36 H 1.08997 * 109.50064 * 58.58839 * 9 8 6 37 37 H 1.09005 * 109.49186 * 178.68598 * 9 8 6 38 38 H 1.09006 * 109.58696 * 174.42599 * 10 9 8 39 39 H 1.08998 * 109.59436 * 294.70886 * 10 9 8 40 40 H 1.08996 * 109.47462 * 293.97773 * 15 12 11 41 41 H 1.09000 * 109.47404 * 53.98368 * 15 12 11 42 42 H 0.96999 * 119.99940 * 185.02907 * 20 19 17 43 43 H 1.08999 * 117.49580 * 0.02562 * 25 16 15 44 44 H 1.09002 * 117.49989 * 145.01984 * 25 16 15 45 45 H 1.09003 * 117.49423 * 214.97964 * 26 16 15 46 46 H 1.08991 * 117.50022 * 359.97330 * 26 16 15 47 47 H 1.08998 * 109.56234 * 293.78339 * 27 11 10 48 48 H 1.09007 * 109.61350 * 173.35768 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6096 0.0010 7 1 3.7213 -3.1492 0.8424 8 6 3.7532 -3.2937 -1.3075 9 6 4.2345 -4.7464 -1.2946 10 6 5.7622 -4.7730 -1.1855 11 7 6.1658 -3.9933 -0.0073 12 16 7.1463 -4.6588 1.1495 13 8 6.8276 -3.9413 2.3340 14 8 6.9053 -6.0557 1.0519 15 6 8.8288 -4.2630 0.5988 16 6 9.8314 -4.6985 1.6694 17 6 9.9151 -6.1827 1.9163 18 1 9.3412 -6.6307 2.7140 19 6 10.7243 -6.9688 1.1237 20 7 11.3031 -6.4545 0.0606 21 14 10.9989 -8.7643 1.5599 22 1 9.9630 -9.5982 0.8989 23 1 12.3447 -9.1865 1.0955 24 1 10.9069 -8.9357 3.0321 25 6 10.0313 -3.7704 2.8693 26 6 11.1215 -3.8865 1.8011 27 6 5.6827 -2.6120 0.1257 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6959 -2.0072 0.0013 32 1 4.0089 -0.6531 0.8910 33 1 4.0095 -0.6535 -0.8890 34 1 2.6683 -3.2714 -1.4099 35 1 4.2082 -2.7680 -2.1470 36 1 3.7995 -5.2662 -0.4410 37 1 3.9270 -5.2396 -2.2169 38 1 6.1028 -5.8027 -1.0764 39 1 6.2005 -4.3364 -2.0829 40 1 9.0398 -4.7895 -0.3320 41 1 8.9147 -3.1887 0.4362 42 1 11.8127 -7.0235 -0.5373 43 1 9.4483 -2.8498 2.8962 44 1 10.2237 -4.2334 3.8372 45 1 12.0307 -4.4259 2.0666 46 1 11.2562 -3.0425 1.1248 47 1 6.1148 -1.9967 -0.6634 48 1 5.9704 -2.2160 1.0997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363948033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:09 Heat of formation + Delta-G solvation = -122.363814 kcal Electronic energy + Delta-G solvation = -29247.172248 eV Core-core repulsion = 25235.367621 eV Total energy + Delta-G solvation = -4011.804627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.75907 -39.53190 -38.58150 -38.02146 -36.79765 -36.09318 -34.10637 -33.32875 -32.60558 -30.48812 -29.84754 -27.52166 -26.71196 -25.43139 -23.13098 -23.01299 -21.59415 -21.45380 -21.11148 -19.67126 -18.62759 -18.34245 -17.76948 -17.26469 -16.86442 -16.80850 -16.58562 -16.51233 -15.75306 -15.60371 -15.38265 -15.08350 -15.01654 -14.81592 -14.51888 -14.06684 -13.76476 -13.68406 -13.67482 -13.48823 -13.20293 -13.12679 -12.92209 -12.90618 -12.87369 -12.85863 -12.67561 -12.44520 -12.23906 -12.06719 -11.93843 -11.81094 -11.62104 -11.46731 -11.33562 -10.96398 -10.89368 -10.57081 -10.17121 -10.06387 -9.71500 -8.21217 -6.36167 -0.54883 1.37347 1.39295 1.48200 1.68729 1.90187 2.34843 2.37955 2.98955 3.05651 3.32720 3.38982 3.55965 3.81056 3.84774 3.96065 4.00808 4.17304 4.19218 4.28326 4.36168 4.43448 4.49587 4.55903 4.57056 4.59038 4.66319 4.72085 4.79550 4.82652 4.88354 4.92250 4.95228 5.01422 5.10921 5.17033 5.19187 5.21085 5.31798 5.43102 5.45052 5.52412 5.56331 5.69457 5.73024 6.20649 6.61101 6.69938 7.30196 7.36095 8.85884 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.002781 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.003260 B =10065.775427 C =10707.457648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.501 3.499 3 O -0.605 6.605 4 N -0.717 5.717 5 C 0.127 3.873 6 C -0.104 4.104 7 H 0.076 0.924 8 C -0.105 4.105 9 C -0.128 4.128 10 C 0.104 3.896 11 N -1.000 6.000 12 S 2.621 3.379 13 O -0.990 6.990 14 O -0.989 6.989 15 C -0.553 4.553 16 C 0.011 3.989 17 C -0.535 4.535 18 H 0.048 0.952 19 C 0.042 3.958 20 N -0.893 5.893 21 Si 0.936 3.064 22 H -0.275 1.275 23 H -0.273 1.273 24 H -0.270 1.270 25 C -0.196 4.196 26 C -0.140 4.140 27 C 0.114 3.886 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.416 0.584 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.266 0.734 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.681 8.750 -6.893 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.291 3.709 3 O -0.487 6.487 4 N -0.370 5.370 5 C 0.002 3.998 6 C -0.124 4.124 7 H 0.095 0.905 8 C -0.143 4.143 9 C -0.167 4.167 10 C -0.021 4.021 11 N -0.839 5.839 12 S 2.719 3.281 13 O -0.981 6.981 14 O -0.979 6.979 15 C -0.686 4.686 16 C 0.009 3.991 17 C -0.573 4.573 18 H 0.066 0.934 19 C -0.161 4.161 20 N -0.529 5.529 21 Si 0.761 3.239 22 H -0.200 1.200 23 H -0.198 1.198 24 H -0.194 1.194 25 C -0.234 4.234 26 C -0.179 4.179 27 C -0.011 4.011 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.254 0.746 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.385 8.949 -6.259 22.250 hybrid contribution 1.006 -1.260 -0.081 1.614 sum -18.379 7.689 -6.340 20.907 Atomic orbital electron populations 1.21897 0.88225 1.06251 1.06048 1.21604 0.92319 0.82777 0.74243 1.90715 1.72259 1.33396 1.52281 1.46037 1.07066 1.09320 1.74552 1.21208 0.80464 0.95912 1.02183 1.21628 0.95193 0.95172 1.00417 0.90538 1.21558 1.02053 0.94546 0.96130 1.21867 0.93649 0.97886 1.03274 1.21693 0.97297 0.95641 0.87432 1.57706 1.64027 1.23379 1.38762 1.04464 0.76644 0.73184 0.73762 1.93444 1.83666 1.74560 1.46406 1.93464 1.84853 1.33237 1.86362 1.29939 1.19735 1.09302 1.09596 1.18422 0.95963 0.91966 0.92758 1.20696 1.27704 0.91551 1.17317 0.93405 1.25540 0.94127 1.01804 0.94640 1.70026 1.33447 1.36628 1.12764 0.85887 0.77851 0.81087 0.79088 1.20029 1.19780 1.19431 1.23238 1.04331 1.01431 0.94364 1.22513 0.93096 1.01165 1.01096 1.21568 0.94519 0.81366 1.03676 0.87553 0.89044 0.87246 0.74624 0.92524 0.90984 0.89428 0.90374 0.92527 0.88343 0.90825 0.89285 0.86149 0.85270 0.92494 0.88323 0.89988 0.91554 0.89441 0.88840 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.30 71.23 0.73 -0.51 16 2 C 0.50 8.61 7.94 87.66 0.70 9.31 16 3 O -0.60 -17.04 17.10 -3.04 -0.05 -17.09 16 4 N -0.72 -9.53 5.27 -463.07 -2.44 -11.97 16 5 C 0.13 2.13 5.07 86.38 0.44 2.57 16 6 C -0.10 -1.76 2.37 -10.72 -0.03 -1.79 16 7 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 8 C -0.11 -1.36 5.06 30.62 0.15 -1.21 16 9 C -0.13 -2.18 6.08 30.67 0.19 -2.00 16 10 C 0.10 2.47 6.43 86.36 0.56 3.02 16 11 N -1.00 -28.05 3.22 -513.04 -1.65 -29.70 16 12 S 2.62 104.07 5.19 -56.49 -0.29 103.78 16 13 O -0.99 -42.20 16.59 -127.65 -2.12 -44.32 16 14 O -0.99 -47.05 16.25 -127.65 -2.07 -49.13 16 15 C -0.55 -22.83 6.03 71.98 0.43 -22.39 16 16 C 0.01 0.54 1.32 -52.92 -0.07 0.47 16 17 C -0.54 -29.82 8.18 25.60 0.21 -29.61 16 18 H 0.05 2.77 7.83 -2.91 -0.02 2.75 16 19 C 0.04 2.30 5.38 84.65 0.46 2.75 16 20 N -0.89 -49.22 12.98 21.45 0.28 -48.94 16 21 Si 0.94 43.92 29.55 68.60 2.03 45.95 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.20 -8.51 9.96 30.62 0.30 -8.20 16 26 C -0.14 -6.31 9.49 30.62 0.29 -6.01 16 27 C 0.11 2.52 5.72 86.36 0.49 3.01 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.42 2.97 7.66 -92.71 -0.71 2.26 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 0.72 7.16 -2.39 -0.02 0.71 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.07 2.11 6.86 -2.38 -0.02 2.09 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.12 5.26 8.14 -2.39 -0.02 5.24 16 41 H 0.13 4.34 8.09 -2.39 -0.02 4.32 16 42 H 0.27 13.89 8.32 -92.71 -0.77 13.12 16 43 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 44 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 45 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 47 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 2.09 6.86 -2.38 -0.02 2.07 16 Total: -1.00 -77.96 399.83 -1.23 -79.19 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.24 Total: 22.82 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 4.86 Total: -50.58 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -3.82 Total: -90.61 kcal Atomic # 8 Polarization: -106.30 SS G_CDS: -4.24 Total: -110.54 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 104.07 SS G_CDS: -0.29 Total: 103.78 kcal Total: -77.96 -1.23 -79.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363948033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.176 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds