Wall clock time and date at job start Sat Apr 11 2020 07:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99504 * 2 1 4 4 N 1.34766 * 120.00244 * 179.97438 * 2 1 3 5 5 C 1.47025 * 125.65119 * 359.95844 * 4 2 1 6 6 C 1.54322 * 107.27510 * 181.09547 * 5 4 2 7 7 C 1.55157 * 102.93962 * 22.19693 * 6 5 4 8 8 H 1.08997 * 111.04242 * 82.58822 * 7 6 5 9 9 C 1.53000 * 111.00203 * 206.42406 * 7 6 5 10 10 N 1.46509 * 109.47320 * 178.64643 * 9 7 6 11 11 C 1.46498 * 119.99715 * 275.00179 * 10 9 7 12 12 S 1.65598 * 119.99696 * 95.00019 * 10 9 7 13 13 O 1.42106 * 104.27495 * 153.93372 * 12 10 9 14 14 O 1.42100 * 104.28106 * 26.07052 * 12 10 9 15 15 C 1.81406 * 104.44746 * 270.00021 * 12 10 9 16 16 C 1.52999 * 109.46913 * 172.79779 * 15 12 10 17 17 C 1.50698 * 115.56473 * 39.76947 * 16 15 12 18 18 H 1.07997 * 120.00133 * 267.69753 * 17 16 15 19 19 C 1.37878 * 119.99765 * 87.68777 * 17 16 15 20 20 N 1.31509 * 120.00272 * 353.72597 * 19 17 16 21 21 Si 1.86804 * 119.99821 * 173.71511 * 19 17 16 22 22 H 1.48500 * 109.47071 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46656 * 120.00607 * 21 19 17 24 24 H 1.48499 * 109.47338 * 240.00350 * 21 19 17 25 25 C 1.53004 * 117.49720 * 185.46212 * 16 15 12 26 26 C 1.52999 * 59.99946 * 107.48926 * 25 16 15 27 27 C 1.47425 * 125.65074 * 180.02562 * 4 2 1 28 28 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47647 * 300.00321 * 1 2 3 30 30 H 1.09007 * 109.47263 * 60.00637 * 1 2 3 31 31 H 1.09007 * 109.88173 * 300.51432 * 5 4 2 32 32 H 1.09000 * 109.87834 * 61.67599 * 5 4 2 33 33 H 1.08992 * 110.72210 * 263.83452 * 6 5 4 34 34 H 1.09001 * 110.71996 * 140.55695 * 6 5 4 35 35 H 1.08999 * 109.47123 * 58.65085 * 9 7 6 36 36 H 1.09003 * 109.47325 * 298.64519 * 9 7 6 37 37 H 1.08999 * 109.47370 * 269.99461 * 11 10 9 38 38 H 1.09000 * 109.47229 * 30.00016 * 11 10 9 39 39 H 1.09002 * 109.46865 * 149.99887 * 11 10 9 40 40 H 1.09004 * 109.46841 * 52.79925 * 15 12 10 41 41 H 1.08994 * 109.47380 * 292.79717 * 15 12 10 42 42 H 0.97001 * 120.00419 * 185.01241 * 20 19 17 43 43 H 1.09000 * 117.49634 * 359.97438 * 25 16 15 44 44 H 1.08997 * 117.49544 * 214.97853 * 25 16 15 45 45 H 1.08994 * 117.49873 * 107.49506 * 26 25 16 46 46 H 1.08999 * 117.49515 * 252.50541 * 26 25 16 47 47 H 1.09001 * 110.36600 * 36.99430 * 27 4 2 48 48 H 1.08995 * 110.46292 * 274.72272 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5748 -2.5066 0.0020 6 6 2.7282 -3.5315 0.0303 7 6 3.9081 -2.7105 0.6143 8 1 3.8593 -2.6749 1.7026 9 6 5.2520 -3.2731 0.1469 10 7 6.3394 -2.4555 0.6904 11 6 6.7633 -1.2409 -0.0105 12 16 7.0892 -2.9044 2.0970 13 8 8.3863 -2.3318 2.0009 14 8 6.9127 -4.3132 2.1543 15 6 6.1287 -2.0889 3.4021 16 6 6.6153 -2.5708 4.7702 17 6 8.1063 -2.7424 4.9067 18 1 8.5601 -3.7016 4.7059 19 6 8.8910 -1.6746 5.2877 20 7 8.3586 -0.4786 5.4123 21 14 10.7105 -1.9270 5.6274 22 1 11.0599 -3.3549 5.4170 23 1 11.5084 -1.0812 4.7036 24 1 11.0097 -1.5454 7.0309 25 6 5.8432 -2.0950 6.0025 26 6 5.7191 -3.5466 5.5353 27 6 3.6480 -1.3122 0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.9483 -2.6290 0.8856 32 1 0.9783 -2.6445 -0.8999 33 1 2.9607 -3.8782 -0.9765 34 1 2.4826 -4.3705 0.6813 35 1 5.2940 -3.2559 -0.9422 36 1 5.3584 -4.2994 0.4985 37 1 7.5503 -1.4884 -0.7229 38 1 5.9135 -0.8128 -0.5421 39 1 7.1416 -0.5178 0.7121 40 1 5.0734 -2.3353 3.2843 41 1 6.2601 -1.0094 3.3293 42 1 8.9229 0.2855 5.6090 43 1 4.9889 -1.4383 5.8384 44 1 6.4137 -1.9060 6.9118 45 1 6.2077 -4.3126 6.1374 46 1 4.7827 -3.8453 5.0641 47 1 4.1056 -0.5372 0.6160 48 1 4.0358 -1.2662 -1.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364800616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:28 Heat of formation + Delta-G solvation = -78.024322 kcal Electronic energy + Delta-G solvation = -30068.645054 eV Core-core repulsion = 26058.763132 eV Total energy + Delta-G solvation = -4009.881922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.27643 -38.08744 -36.73557 -36.19453 -35.85051 -34.91019 -32.37464 -32.04019 -30.16030 -29.29308 -28.21070 -27.14183 -25.51442 -24.24849 -23.13062 -21.19377 -20.82466 -19.56969 -19.42673 -18.20200 -17.28098 -16.98850 -16.71992 -16.40291 -15.76896 -15.51021 -15.15919 -14.73533 -14.57067 -14.21452 -13.96319 -13.74268 -13.66915 -13.38740 -13.12215 -12.97456 -12.83489 -12.65842 -12.34137 -12.28472 -12.21528 -11.99170 -11.79516 -11.68614 -11.25267 -11.12104 -11.03986 -10.97530 -10.91950 -10.78889 -10.69489 -10.49641 -10.34811 -10.11136 -10.05700 -9.69706 -8.99136 -8.87405 -8.78477 -8.52675 -8.09199 -6.15299 -4.30771 1.12641 2.44264 2.78586 3.31220 3.40238 3.40528 3.45493 4.16020 4.25910 4.40010 4.53080 4.60030 4.71891 4.83855 4.90588 4.94901 5.03014 5.07554 5.13191 5.15023 5.20499 5.25974 5.33396 5.46478 5.51375 5.54846 5.59011 5.62971 5.70072 5.74232 5.85413 5.88256 5.97564 6.07849 6.11252 6.21352 6.32804 6.36455 6.61654 6.69416 6.86081 6.98051 7.19273 7.30236 7.41466 7.78592 7.96774 8.18519 8.78422 9.46490 10.92000 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.003587 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.543158 B = 7803.013617 C = 8151.872680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.546 6.546 4 N -0.622 5.622 5 C 0.100 3.900 6 C -0.126 4.126 7 C -0.130 4.130 8 H 0.090 0.910 9 C 0.127 3.873 10 N -1.018 6.018 11 C 0.091 3.909 12 S 2.622 3.378 13 O -0.940 6.940 14 O -0.972 6.972 15 C -0.559 4.559 16 C 0.049 3.951 17 C -0.543 4.543 18 H 0.069 0.931 19 C 0.096 3.904 20 N -0.866 5.866 21 Si 0.892 3.108 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.282 1.282 25 C -0.141 4.141 26 C -0.204 4.204 27 C 0.109 3.891 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.265 0.735 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.937 -3.522 -12.892 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.313 3.687 3 O -0.423 6.423 4 N -0.357 5.357 5 C -0.023 4.023 6 C -0.164 4.164 7 C -0.151 4.151 8 H 0.109 0.891 9 C 0.000 4.000 10 N -0.853 5.853 11 C -0.055 4.055 12 S 2.719 3.281 13 O -0.930 6.930 14 O -0.962 6.962 15 C -0.692 4.692 16 C 0.047 3.953 17 C -0.580 4.580 18 H 0.087 0.913 19 C -0.112 4.112 20 N -0.500 5.500 21 Si 0.718 3.282 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.208 1.208 25 C -0.180 4.180 26 C -0.241 4.241 27 C -0.013 4.013 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.863 -3.228 -12.809 19.885 hybrid contribution 0.210 0.546 0.416 0.718 sum -14.652 -2.682 -12.393 19.377 Atomic orbital electron populations 1.21877 0.91509 1.04261 1.05240 1.20510 0.90359 0.82106 0.75703 1.90750 1.70716 1.30659 1.50171 1.48659 1.07713 1.05825 1.73487 1.22081 0.96568 0.81875 1.01793 1.22669 0.93614 0.97547 1.02601 1.23054 0.95698 0.94673 1.01660 0.89140 1.21247 0.83558 0.95418 0.99745 1.58025 1.49441 1.35558 1.42264 1.21504 0.99780 0.86123 0.98090 1.04824 0.75249 0.74732 0.73303 1.93531 1.35265 1.79351 1.84828 1.93451 1.86969 1.29519 1.86286 1.30069 1.10325 1.13456 1.15308 1.18182 0.92847 0.98357 0.85904 1.20629 0.88860 0.97720 1.50809 0.91269 1.24915 0.98855 0.94863 0.92521 1.69969 1.35742 0.98793 1.45490 0.86521 0.84775 0.79187 0.77676 1.19161 1.20258 1.20800 1.22495 1.00938 0.94049 1.00488 1.23129 1.00551 0.93784 1.06672 1.22407 0.80118 0.97687 1.01054 0.90528 0.88680 0.88818 0.91077 0.91151 0.89914 0.89193 0.90131 0.88039 0.92655 0.91502 0.90729 0.88801 0.85675 0.92557 0.91731 0.89534 0.89693 0.91424 0.89858 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.21 36.01 0.37 -0.84 16 2 C 0.52 6.22 7.96 -10.99 -0.09 6.13 16 3 O -0.55 -9.07 17.35 5.55 0.10 -8.97 16 4 N -0.62 -6.45 3.33 -170.53 -0.57 -7.02 16 5 C 0.10 0.68 5.81 -3.06 -0.02 0.66 16 6 C -0.13 -0.87 6.42 -24.90 -0.16 -1.03 16 7 C -0.13 -1.34 3.29 -88.48 -0.29 -1.63 16 8 H 0.09 1.05 6.72 -51.93 -0.35 0.70 16 9 C 0.13 1.48 5.22 -4.04 -0.02 1.46 16 10 N -1.02 -15.50 3.08 -121.75 -0.37 -15.88 16 11 C 0.09 1.23 9.83 59.85 0.59 1.82 16 12 S 2.62 54.90 4.52 -107.50 -0.49 54.41 16 13 O -0.94 -23.33 16.30 -57.54 -0.94 -24.27 16 14 O -0.97 -21.78 16.53 -57.54 -0.95 -22.74 16 15 C -0.56 -11.77 6.29 37.16 0.23 -11.54 16 16 C 0.05 1.20 1.70 -155.66 -0.26 0.94 16 17 C -0.54 -15.00 6.95 -34.44 -0.24 -15.24 16 18 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 19 C 0.10 2.66 5.38 -17.82 -0.10 2.57 16 20 N -0.87 -24.27 12.81 55.43 0.71 -23.56 16 21 Si 0.89 22.01 29.55 -169.99 -5.02 16.99 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.14 -3.24 9.30 -26.73 -0.25 -3.49 16 26 C -0.20 -4.41 9.88 -26.73 -0.26 -4.68 16 27 C 0.11 1.23 4.69 -2.54 -0.01 1.21 16 28 H 0.08 0.37 6.60 -51.93 -0.34 0.02 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.42 8.02 -51.93 -0.42 0.00 16 32 H 0.07 0.34 8.09 -51.93 -0.42 -0.07 16 33 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.10 1.25 6.82 -51.93 -0.35 0.90 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.72 5.46 -51.93 -0.28 0.44 16 39 H 0.07 1.10 7.79 -51.93 -0.40 0.70 16 40 H 0.09 1.64 6.52 -51.92 -0.34 1.30 16 41 H 0.12 2.72 8.14 -51.93 -0.42 2.29 16 42 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 45 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 46 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 47 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 48 H 0.07 0.72 7.20 -51.93 -0.37 0.35 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -36.05 394.07 -9.97 -46.02 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.87 Total: 2.74 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -0.51 Total: -23.66 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.23 Total: -46.46 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -1.79 Total: -55.98 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 54.90 SS G_CDS: -0.49 Total: 54.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.05 -9.97 -46.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364800616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.005 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds