Wall clock time and date at job start Sat Apr 11 2020 07:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99504 * 2 1 4 4 N 1.34766 * 120.00244 * 179.97438 * 2 1 3 5 5 C 1.47025 * 125.65119 * 359.95844 * 4 2 1 6 6 C 1.54322 * 107.27510 * 181.09547 * 5 4 2 7 7 C 1.55157 * 102.93962 * 22.19693 * 6 5 4 8 8 H 1.08997 * 111.04242 * 82.58822 * 7 6 5 9 9 C 1.53000 * 111.00203 * 206.42406 * 7 6 5 10 10 N 1.46509 * 109.47320 * 178.64643 * 9 7 6 11 11 C 1.46498 * 119.99715 * 275.00179 * 10 9 7 12 12 S 1.65598 * 119.99696 * 95.00019 * 10 9 7 13 13 O 1.42106 * 104.27495 * 153.93372 * 12 10 9 14 14 O 1.42100 * 104.28106 * 26.07052 * 12 10 9 15 15 C 1.81406 * 104.44746 * 270.00021 * 12 10 9 16 16 C 1.52999 * 109.46913 * 172.79779 * 15 12 10 17 17 C 1.50698 * 115.56473 * 39.76947 * 16 15 12 18 18 H 1.07997 * 120.00133 * 267.69753 * 17 16 15 19 19 C 1.37878 * 119.99765 * 87.68777 * 17 16 15 20 20 N 1.31509 * 120.00272 * 353.72597 * 19 17 16 21 21 Si 1.86804 * 119.99821 * 173.71511 * 19 17 16 22 22 H 1.48500 * 109.47071 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46656 * 120.00607 * 21 19 17 24 24 H 1.48499 * 109.47338 * 240.00350 * 21 19 17 25 25 C 1.53004 * 117.49720 * 185.46212 * 16 15 12 26 26 C 1.52999 * 59.99946 * 107.48926 * 25 16 15 27 27 C 1.47425 * 125.65074 * 180.02562 * 4 2 1 28 28 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47647 * 300.00321 * 1 2 3 30 30 H 1.09007 * 109.47263 * 60.00637 * 1 2 3 31 31 H 1.09007 * 109.88173 * 300.51432 * 5 4 2 32 32 H 1.09000 * 109.87834 * 61.67599 * 5 4 2 33 33 H 1.08992 * 110.72210 * 263.83452 * 6 5 4 34 34 H 1.09001 * 110.71996 * 140.55695 * 6 5 4 35 35 H 1.08999 * 109.47123 * 58.65085 * 9 7 6 36 36 H 1.09003 * 109.47325 * 298.64519 * 9 7 6 37 37 H 1.08999 * 109.47370 * 269.99461 * 11 10 9 38 38 H 1.09000 * 109.47229 * 30.00016 * 11 10 9 39 39 H 1.09002 * 109.46865 * 149.99887 * 11 10 9 40 40 H 1.09004 * 109.46841 * 52.79925 * 15 12 10 41 41 H 1.08994 * 109.47380 * 292.79717 * 15 12 10 42 42 H 0.97001 * 120.00419 * 185.01241 * 20 19 17 43 43 H 1.09000 * 117.49634 * 359.97438 * 25 16 15 44 44 H 1.08997 * 117.49544 * 214.97853 * 25 16 15 45 45 H 1.08994 * 117.49873 * 107.49506 * 26 25 16 46 46 H 1.08999 * 117.49515 * 252.50541 * 26 25 16 47 47 H 1.09001 * 110.36600 * 36.99430 * 27 4 2 48 48 H 1.08995 * 110.46292 * 274.72272 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5748 -2.5066 0.0020 6 6 2.7282 -3.5315 0.0303 7 6 3.9081 -2.7105 0.6143 8 1 3.8593 -2.6749 1.7026 9 6 5.2520 -3.2731 0.1469 10 7 6.3394 -2.4555 0.6904 11 6 6.7633 -1.2409 -0.0105 12 16 7.0892 -2.9044 2.0970 13 8 8.3863 -2.3318 2.0009 14 8 6.9127 -4.3132 2.1543 15 6 6.1287 -2.0889 3.4021 16 6 6.6153 -2.5708 4.7702 17 6 8.1063 -2.7424 4.9067 18 1 8.5601 -3.7016 4.7059 19 6 8.8910 -1.6746 5.2877 20 7 8.3586 -0.4786 5.4123 21 14 10.7105 -1.9270 5.6274 22 1 11.0599 -3.3549 5.4170 23 1 11.5084 -1.0812 4.7036 24 1 11.0097 -1.5454 7.0309 25 6 5.8432 -2.0950 6.0025 26 6 5.7191 -3.5466 5.5353 27 6 3.6480 -1.3122 0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.9483 -2.6290 0.8856 32 1 0.9783 -2.6445 -0.8999 33 1 2.9607 -3.8782 -0.9765 34 1 2.4826 -4.3705 0.6813 35 1 5.2940 -3.2559 -0.9422 36 1 5.3584 -4.2994 0.4985 37 1 7.5503 -1.4884 -0.7229 38 1 5.9135 -0.8128 -0.5421 39 1 7.1416 -0.5178 0.7121 40 1 5.0734 -2.3353 3.2843 41 1 6.2601 -1.0094 3.3293 42 1 8.9229 0.2855 5.6090 43 1 4.9889 -1.4383 5.8384 44 1 6.4137 -1.9060 6.9118 45 1 6.2077 -4.3126 6.1374 46 1 4.7827 -3.8453 5.0641 47 1 4.1056 -0.5372 0.6160 48 1 4.0358 -1.2662 -1.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364800616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:27 Heat of formation + Delta-G solvation = -103.783623 kcal Electronic energy + Delta-G solvation = -30069.762062 eV Core-core repulsion = 26058.763132 eV Total energy + Delta-G solvation = -4010.998929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.08611 -39.01905 -38.57116 -37.92936 -36.97988 -36.60550 -34.12756 -33.24925 -30.80254 -30.05654 -29.91213 -28.11622 -27.56692 -25.29206 -23.89282 -22.98093 -21.76372 -21.16938 -20.32045 -19.74326 -18.54943 -18.24353 -18.03425 -17.65869 -17.00099 -16.95044 -16.53767 -16.36238 -15.75655 -15.54256 -15.32056 -15.02853 -14.85607 -14.55231 -14.18006 -14.00118 -13.83045 -13.76346 -13.56129 -13.53907 -13.30365 -13.09686 -13.06131 -12.92431 -12.90155 -12.84546 -12.63267 -12.45573 -12.44538 -12.15921 -12.06933 -11.88877 -11.80518 -11.60161 -11.51823 -10.98590 -10.90908 -10.54252 -10.14560 -9.79534 -9.66337 -8.25881 -6.44576 -0.48882 1.32307 1.37282 1.46258 1.59581 2.00200 2.06116 2.36428 3.02646 3.07360 3.26836 3.41294 3.52536 3.61896 3.70343 3.87365 3.92829 4.12018 4.22068 4.32324 4.37732 4.39961 4.50747 4.54908 4.57127 4.58292 4.63761 4.66555 4.70823 4.78803 4.81576 4.86472 4.92505 4.96056 4.98806 5.05377 5.07257 5.16075 5.18601 5.30532 5.37930 5.39062 5.59245 5.64861 5.71471 6.17107 6.54548 6.65967 7.13391 7.33573 8.81000 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.003587 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.543158 B = 7803.013617 C = 8151.872680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.511 3.489 3 O -0.608 6.608 4 N -0.622 5.622 5 C 0.094 3.906 6 C -0.118 4.118 7 C -0.129 4.129 8 H 0.075 0.925 9 C 0.119 3.881 10 N -1.009 6.009 11 C 0.086 3.914 12 S 2.632 3.368 13 O -0.989 6.989 14 O -0.991 6.991 15 C -0.555 4.555 16 C 0.012 3.988 17 C -0.555 4.555 18 H 0.049 0.951 19 C 0.055 3.945 20 N -0.887 5.887 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.142 4.142 26 C -0.184 4.184 27 C 0.104 3.896 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.266 0.734 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.051 0.949 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 -5.089 -14.442 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.302 3.698 3 O -0.490 6.490 4 N -0.355 5.355 5 C -0.027 4.027 6 C -0.156 4.156 7 C -0.150 4.150 8 H 0.093 0.907 9 C -0.006 4.006 10 N -0.847 5.847 11 C -0.059 4.059 12 S 2.729 3.271 13 O -0.979 6.979 14 O -0.981 6.981 15 C -0.687 4.687 16 C 0.010 3.990 17 C -0.593 4.593 18 H 0.068 0.932 19 C -0.150 4.150 20 N -0.522 5.522 21 Si 0.754 3.246 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.181 4.181 26 C -0.221 4.221 27 C -0.018 4.018 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.147 0.853 41 H 0.129 0.871 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.121 0.879 47 H 0.070 0.930 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.614 -4.853 -14.340 23.226 hybrid contribution 1.009 0.984 0.830 1.635 sum -16.606 -3.869 -13.510 21.754 Atomic orbital electron populations 1.21897 0.87726 1.06446 1.05874 1.21422 0.92225 0.81540 0.74569 1.90717 1.72232 1.32896 1.53180 1.48813 1.07481 1.07041 1.72210 1.22385 0.96799 0.79561 1.03968 1.22735 0.91612 0.97401 1.03840 1.22964 0.96328 0.94842 1.00851 0.90665 1.21610 0.82801 0.94545 1.01634 1.57575 1.50297 1.36443 1.40373 1.21669 1.01356 0.85191 0.97691 1.04170 0.74704 0.74072 0.74157 1.93462 1.38594 1.80008 1.85838 1.93411 1.87194 1.30564 1.86946 1.29954 1.12448 1.12416 1.13840 1.18338 0.91830 1.01006 0.87830 1.20784 0.91119 0.96811 1.50568 0.93231 1.25494 1.01836 0.94918 0.92744 1.70017 1.36619 0.99088 1.46456 0.85948 0.81487 0.78917 0.78290 1.19263 1.20391 1.19098 1.22411 1.00970 0.95715 0.98969 1.23207 1.01046 0.92747 1.05070 1.22376 0.81085 0.97275 1.01093 0.87528 0.88403 0.87721 0.89668 0.88234 0.87859 0.87693 0.86719 0.88398 0.91626 0.88591 0.92686 0.85315 0.87068 0.92462 0.90079 0.91804 0.89948 0.87902 0.93049 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.21 71.24 0.73 -1.11 16 2 C 0.51 11.45 7.96 87.66 0.70 12.15 16 3 O -0.61 -20.56 17.35 -3.04 -0.05 -20.61 16 4 N -0.62 -11.42 3.33 -811.83 -2.70 -14.12 16 5 C 0.09 0.86 5.81 86.73 0.50 1.37 16 6 C -0.12 -1.10 6.42 31.78 0.20 -0.90 16 7 C -0.13 -2.31 3.29 -9.41 -0.03 -2.34 16 8 H 0.07 1.58 6.72 -2.39 -0.02 1.56 16 9 C 0.12 2.47 5.22 86.38 0.45 2.92 16 10 N -1.01 -29.88 3.08 -539.11 -1.66 -31.54 16 11 C 0.09 2.29 9.83 127.77 1.26 3.55 16 12 S 2.63 111.06 4.52 -56.49 -0.26 110.81 16 13 O -0.99 -50.77 16.30 -127.65 -2.08 -52.85 16 14 O -0.99 -44.20 16.53 -127.65 -2.11 -46.31 16 15 C -0.55 -23.37 6.29 71.98 0.45 -22.92 16 16 C 0.01 0.58 1.70 -52.93 -0.09 0.49 16 17 C -0.56 -31.43 6.95 25.60 0.18 -31.25 16 18 H 0.05 2.92 7.82 -2.91 -0.02 2.89 16 19 C 0.05 3.12 5.38 84.66 0.46 3.57 16 20 N -0.89 -50.93 12.81 21.45 0.27 -50.66 16 21 Si 0.93 45.76 29.55 68.60 2.03 47.79 16 22 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 25 C -0.14 -6.49 9.30 30.60 0.28 -6.21 16 26 C -0.18 -7.69 9.88 30.59 0.30 -7.38 16 27 C 0.10 2.16 4.69 86.85 0.41 2.57 16 28 H 0.11 0.54 6.60 -2.39 -0.02 0.53 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 0.59 8.02 -2.38 -0.02 0.57 16 32 H 0.10 0.41 8.09 -2.39 -0.02 0.39 16 33 H 0.10 0.59 8.04 -2.39 -0.02 0.57 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.64 8.07 -2.39 -0.02 1.62 16 36 H 0.10 2.17 6.82 -2.39 -0.02 2.15 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.98 5.46 -2.39 -0.01 1.96 16 39 H 0.05 1.69 7.79 -2.39 -0.02 1.67 16 40 H 0.13 4.34 6.52 -2.39 -0.02 4.32 16 41 H 0.11 4.97 8.14 -2.39 -0.02 4.95 16 42 H 0.27 14.55 8.32 -92.71 -0.77 13.78 16 43 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 46 H 0.10 3.54 8.08 -2.39 -0.02 3.52 16 47 H 0.05 1.39 7.69 -2.39 -0.02 1.37 16 48 H 0.08 1.49 7.20 -2.39 -0.02 1.47 16 Total: -1.00 -82.44 394.07 0.19 -82.26 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.94 Total: 20.69 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 5.80 Total: -45.47 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -4.08 Total: -96.31 kcal Atomic # 8 Polarization: -115.52 SS G_CDS: -4.24 Total: -119.76 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 111.06 SS G_CDS: -0.26 Total: 110.81 kcal Total: -82.44 0.19 -82.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364800616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.528 kcal (2) G-P(sol) polarization free energy of solvation -82.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds