Wall clock time and date at job start Sat Apr 11 2020 07:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47252 * 2 1 4 4 C 1.34892 * 116.99877 * 180.02562 * 3 2 1 5 5 O 1.21642 * 120.00112 * 359.97438 * 4 3 2 6 6 C 1.46394 * 120.00039 * 180.02562 * 4 3 2 7 7 C 1.40730 * 126.55333 * 359.97115 * 6 4 3 8 8 N 1.30658 * 108.71468 * 180.02562 * 7 6 4 9 9 N 1.39907 * 109.55216 * 359.97438 * 8 7 6 10 10 C 1.36304 * 132.14763 * 180.02562 * 9 8 7 11 11 C 1.35769 * 119.15684 * 179.97438 * 10 9 8 12 12 C 1.50700 * 120.32401 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46920 * 270.02819 * 12 11 10 14 14 C 1.46907 * 110.99469 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46994 * 185.34970 * 14 13 12 16 16 C 1.50711 * 115.54846 * 65.04735 * 15 14 13 17 17 H 1.07994 * 119.99773 * 265.44349 * 16 15 14 18 18 C 1.37869 * 119.99702 * 85.44472 * 16 15 14 19 19 N 1.31511 * 120.00454 * 353.59718 * 18 16 15 20 20 Si 1.86807 * 119.99806 * 173.59390 * 18 16 15 21 21 H 1.48499 * 109.46951 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47041 * 119.99958 * 20 18 16 23 23 H 1.48494 * 109.47381 * 240.00373 * 20 18 16 24 24 C 1.52994 * 117.49857 * 279.37848 * 15 14 13 25 25 C 1.52995 * 117.50129 * 210.71441 * 15 14 13 26 26 C 1.39950 * 119.35079 * 0.02562 * 11 10 9 27 27 N 1.31514 * 120.09757 * 359.97438 * 26 11 10 28 28 C 1.33347 * 120.85859 * 0.02562 * 27 26 11 29 29 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46243 * 299.99910 * 1 2 3 31 31 H 1.08995 * 109.46992 * 59.99306 * 1 2 3 32 32 H 1.09005 * 109.46754 * 240.00109 * 2 1 3 33 33 H 1.08998 * 109.47480 * 120.00634 * 2 1 3 34 34 H 1.07999 * 125.64113 * 0.05616 * 7 6 4 35 35 H 1.07999 * 120.42425 * 0.02562 * 10 9 8 36 36 H 1.08997 * 109.46702 * 30.03088 * 12 11 10 37 37 H 1.09003 * 109.46577 * 150.02964 * 12 11 10 38 38 H 1.00901 * 111.00102 * 303.95152 * 13 12 11 39 39 H 1.09003 * 109.46717 * 305.35009 * 14 13 12 40 40 H 1.08999 * 109.46954 * 65.34936 * 14 13 12 41 41 H 0.96999 * 120.00417 * 179.97438 * 19 18 16 42 42 H 1.08996 * 117.50306 * 359.97438 * 24 15 14 43 43 H 1.09004 * 117.49754 * 145.02123 * 24 15 14 44 44 H 1.08996 * 117.50487 * 214.97968 * 25 15 14 45 45 H 1.08997 * 117.49639 * 359.97438 * 25 15 14 46 46 H 1.08005 * 119.95460 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3513 1.5456 -0.0005 5 8 4.0923 0.5809 -0.0005 6 6 3.9109 2.8984 0.0000 7 6 3.1867 4.1050 0.0005 8 7 4.0320 5.1013 0.0003 9 7 5.3402 4.6054 0.0003 10 6 6.5537 5.2261 0.0006 11 6 7.6826 4.4718 0.0010 12 6 9.0379 5.1307 0.0008 13 7 9.4781 5.3447 -1.3843 14 6 10.7991 5.9862 -1.4236 15 6 11.1642 6.3133 -2.8730 16 6 10.2872 7.3354 -3.5494 17 1 9.4486 7.0148 -4.1496 18 6 10.5556 8.6797 -3.4018 19 7 11.4965 9.0753 -2.5725 20 14 9.5829 9.9392 -4.3801 21 1 8.5891 9.2416 -5.2351 22 1 8.8770 10.8533 -3.4466 23 1 10.5087 10.7238 -5.2359 24 6 11.7198 5.1779 -3.7350 25 6 12.6470 6.2949 -3.2494 26 6 7.5752 3.0764 0.0006 27 7 6.3901 2.5062 0.0003 28 6 5.2775 3.2411 -0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.1103 4.1929 0.0014 35 1 6.6165 6.3043 0.0014 36 1 8.9756 6.0899 0.5147 37 1 9.7538 4.4890 0.5145 38 1 9.4819 4.4778 -1.9006 39 1 10.7740 6.9057 -0.8388 40 1 11.5441 5.3095 -1.0051 41 1 11.6856 10.0210 -2.4690 42 1 11.8257 4.1981 -3.2695 43 1 11.4514 5.1705 -4.7914 44 1 12.9883 7.0218 -3.9864 45 1 13.3625 6.0503 -2.4643 46 1 8.4669 2.4669 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364961876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:31 Heat of formation + Delta-G solvation = 60.242289 kcal Electronic energy + Delta-G solvation = -28754.345984 eV Core-core repulsion = 24647.308551 eV Total energy + Delta-G solvation = -4107.037432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.71123 -40.11100 -38.66146 -37.12369 -36.47406 -35.11316 -34.01252 -32.00579 -31.90337 -31.37666 -29.89065 -26.82091 -25.49363 -25.17618 -24.47403 -23.39149 -22.74414 -21.87796 -21.05329 -20.87238 -19.10848 -18.84730 -17.65635 -17.31397 -16.74974 -16.57015 -16.21383 -16.18358 -15.49378 -15.03611 -14.50334 -14.35442 -14.17338 -14.04863 -13.77018 -13.71223 -13.61172 -13.32503 -12.98527 -12.77545 -12.62445 -12.20703 -12.15891 -11.88600 -11.65900 -11.56889 -11.43850 -11.23318 -10.99587 -10.74143 -10.64756 -10.49400 -10.39987 -10.23979 -10.01193 -9.81265 -9.51836 -8.86918 -8.44712 -8.30925 -8.12590 -7.80649 -6.02545 -4.04100 0.13642 0.56936 1.62467 1.77283 2.62595 2.80830 3.28365 3.31175 3.37384 3.42110 3.52951 3.84443 4.20089 4.39868 4.43056 4.62564 4.68353 4.69095 4.75508 4.81291 4.96599 5.02092 5.08731 5.20944 5.27910 5.37857 5.50047 5.50659 5.55575 5.69789 5.73161 5.77385 5.90481 6.07535 6.14374 6.21729 6.39154 6.40017 6.49676 6.66895 6.74787 7.04307 7.06169 7.32803 7.40273 7.43783 7.71907 7.88163 7.88934 7.92045 8.47692 8.95812 9.59759 11.07137 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.002192 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.473871 B =12768.383716 C =13557.180026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.360 6.360 4 C 0.547 3.453 5 O -0.505 6.505 6 C -0.297 4.297 7 C 0.150 3.850 8 N -0.310 5.310 9 N -0.299 5.299 10 C 0.191 3.809 11 C -0.171 4.171 12 C 0.110 3.890 13 N -0.667 5.667 14 C 0.107 3.893 15 C 0.049 3.951 16 C -0.469 4.469 17 H 0.059 0.941 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.886 3.114 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.215 4.215 25 C -0.157 4.157 26 C 0.205 3.795 27 N -0.455 5.455 28 C 0.332 3.668 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.210 0.790 35 H 0.192 0.808 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.333 0.667 39 H 0.080 0.920 40 H 0.000 1.000 41 H 0.257 0.743 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 -12.996 9.012 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.278 6.278 4 C 0.392 3.608 5 O -0.393 6.393 6 C -0.311 4.311 7 C -0.033 4.033 8 N -0.131 5.131 9 N -0.065 5.065 10 C 0.055 3.945 11 C -0.177 4.177 12 C -0.020 4.020 13 N -0.297 5.297 14 C -0.021 4.021 15 C 0.049 3.951 16 C -0.507 4.507 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.253 4.253 25 C -0.195 4.195 26 C 0.024 3.976 27 N -0.166 5.166 28 C 0.097 3.903 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.227 0.773 35 H 0.209 0.791 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.018 0.982 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.957 -12.148 9.018 21.274 hybrid contribution 0.248 -0.035 -0.321 0.407 sum -14.709 -12.183 8.698 20.986 Atomic orbital electron populations 1.21804 0.92737 1.02864 1.03489 1.22954 0.95039 0.80250 1.02590 1.86522 1.23910 1.32087 1.85292 1.19384 0.80197 0.88058 0.73144 1.90900 1.60041 1.41804 1.46591 1.18113 0.88543 0.92328 1.32139 1.24237 1.00487 0.88072 0.90498 1.77685 0.83387 1.21176 1.30832 1.47041 1.07002 1.07080 1.45354 1.22209 0.79300 1.01205 0.91820 1.20700 0.96665 0.94477 1.05870 1.20729 0.88421 0.99759 0.93118 1.60409 1.31129 1.29085 1.09055 1.21592 0.84950 0.96699 0.98818 1.18825 0.92399 0.93998 0.89909 1.20328 1.11977 0.89197 1.29228 0.92271 1.24931 0.95165 0.98290 0.95065 1.70002 1.31777 1.15184 1.35322 0.86629 0.80052 0.81621 0.80227 1.19829 1.21198 1.21220 1.23003 1.09295 0.92813 1.00164 1.22522 0.94667 0.99912 1.02396 1.23686 0.95474 0.92234 0.86183 1.68368 0.96444 1.35728 1.16010 1.20310 0.94214 0.80298 0.95427 0.90343 0.91516 0.91456 0.91305 0.91361 0.77335 0.79121 0.89241 0.93642 0.84926 0.90190 0.98203 0.93323 0.92122 0.90515 0.90037 0.92070 0.79859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.49 16 2 C 0.07 0.58 6.20 37.16 0.23 0.81 16 3 O -0.36 -4.12 10.06 -41.02 -0.41 -4.53 16 4 C 0.55 7.82 7.92 34.01 0.27 8.09 16 5 O -0.51 -8.61 16.53 -19.38 -0.32 -8.93 16 6 C -0.30 -4.16 6.17 -104.67 -0.65 -4.80 16 7 C 0.15 1.73 11.79 -17.11 -0.20 1.53 16 8 N -0.31 -4.18 12.57 30.78 0.39 -3.79 16 9 N -0.30 -4.13 3.86 -11.96 -0.05 -4.17 16 10 C 0.19 2.32 10.94 -16.45 -0.18 2.14 16 11 C -0.17 -1.92 5.37 -104.86 -0.56 -2.48 16 12 C 0.11 1.30 5.82 -4.97 -0.03 1.27 16 13 N -0.67 -10.66 6.37 -115.05 -0.73 -11.39 16 14 C 0.11 2.07 5.51 -3.82 -0.02 2.05 16 15 C 0.05 1.11 1.55 -155.66 -0.24 0.87 16 16 C -0.47 -12.09 8.74 -34.44 -0.30 -12.39 16 17 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 18 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 19 N -0.89 -23.93 12.92 55.43 0.72 -23.21 16 20 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.22 -4.36 9.96 -26.70 -0.27 -4.63 16 25 C -0.16 -3.47 9.41 -26.69 -0.25 -3.72 16 26 C 0.20 2.29 10.97 -17.05 -0.19 2.10 16 27 N -0.45 -6.58 10.26 -11.99 -0.12 -6.70 16 28 C 0.33 4.94 7.74 -155.85 -1.21 3.74 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.21 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.09 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.33 5.05 8.78 -39.29 -0.34 4.71 16 39 H 0.08 1.74 8.13 -51.93 -0.42 1.31 16 40 H 0.00 0.00 8.09 -51.93 -0.42 -0.42 16 41 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -32.45 401.96 -9.45 -41.90 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.65 Total: 3.29 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.31 Total: -4.24 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.20 Total: -49.28 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.73 Total: -13.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.45 -9.45 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364961876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.146 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds