Wall clock time and date at job start Sat Apr 11 2020 07:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47252 * 2 1 4 4 C 1.34892 * 116.99877 * 180.02562 * 3 2 1 5 5 O 1.21642 * 120.00112 * 359.97438 * 4 3 2 6 6 C 1.46394 * 120.00039 * 180.02562 * 4 3 2 7 7 C 1.40730 * 126.55333 * 359.97115 * 6 4 3 8 8 N 1.30658 * 108.71468 * 180.02562 * 7 6 4 9 9 N 1.39907 * 109.55216 * 359.97438 * 8 7 6 10 10 C 1.36304 * 132.14763 * 180.02562 * 9 8 7 11 11 C 1.35769 * 119.15684 * 179.97438 * 10 9 8 12 12 C 1.50700 * 120.32401 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46920 * 270.02819 * 12 11 10 14 14 C 1.46907 * 110.99469 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46994 * 185.34970 * 14 13 12 16 16 C 1.50711 * 115.54846 * 65.04735 * 15 14 13 17 17 H 1.07994 * 119.99773 * 265.44349 * 16 15 14 18 18 C 1.37869 * 119.99702 * 85.44472 * 16 15 14 19 19 N 1.31511 * 120.00454 * 353.59718 * 18 16 15 20 20 Si 1.86807 * 119.99806 * 173.59390 * 18 16 15 21 21 H 1.48499 * 109.46951 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47041 * 119.99958 * 20 18 16 23 23 H 1.48494 * 109.47381 * 240.00373 * 20 18 16 24 24 C 1.52994 * 117.49857 * 279.37848 * 15 14 13 25 25 C 1.52995 * 117.50129 * 210.71441 * 15 14 13 26 26 C 1.39950 * 119.35079 * 0.02562 * 11 10 9 27 27 N 1.31514 * 120.09757 * 359.97438 * 26 11 10 28 28 C 1.33347 * 120.85859 * 0.02562 * 27 26 11 29 29 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46243 * 299.99910 * 1 2 3 31 31 H 1.08995 * 109.46992 * 59.99306 * 1 2 3 32 32 H 1.09005 * 109.46754 * 240.00109 * 2 1 3 33 33 H 1.08998 * 109.47480 * 120.00634 * 2 1 3 34 34 H 1.07999 * 125.64113 * 0.05616 * 7 6 4 35 35 H 1.07999 * 120.42425 * 0.02562 * 10 9 8 36 36 H 1.08997 * 109.46702 * 30.03088 * 12 11 10 37 37 H 1.09003 * 109.46577 * 150.02964 * 12 11 10 38 38 H 1.00901 * 111.00102 * 303.95152 * 13 12 11 39 39 H 1.09003 * 109.46717 * 305.35009 * 14 13 12 40 40 H 1.08999 * 109.46954 * 65.34936 * 14 13 12 41 41 H 0.96999 * 120.00417 * 179.97438 * 19 18 16 42 42 H 1.08996 * 117.50306 * 359.97438 * 24 15 14 43 43 H 1.09004 * 117.49754 * 145.02123 * 24 15 14 44 44 H 1.08996 * 117.50487 * 214.97968 * 25 15 14 45 45 H 1.08997 * 117.49639 * 359.97438 * 25 15 14 46 46 H 1.08005 * 119.95460 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3513 1.5456 -0.0005 5 8 4.0923 0.5809 -0.0005 6 6 3.9109 2.8984 0.0000 7 6 3.1867 4.1050 0.0005 8 7 4.0320 5.1013 0.0003 9 7 5.3402 4.6054 0.0003 10 6 6.5537 5.2261 0.0006 11 6 7.6826 4.4718 0.0010 12 6 9.0379 5.1307 0.0008 13 7 9.4781 5.3447 -1.3843 14 6 10.7991 5.9862 -1.4236 15 6 11.1642 6.3133 -2.8730 16 6 10.2872 7.3354 -3.5494 17 1 9.4486 7.0148 -4.1496 18 6 10.5556 8.6797 -3.4018 19 7 11.4965 9.0753 -2.5725 20 14 9.5829 9.9392 -4.3801 21 1 8.5891 9.2416 -5.2351 22 1 8.8770 10.8533 -3.4466 23 1 10.5087 10.7238 -5.2359 24 6 11.7198 5.1779 -3.7350 25 6 12.6470 6.2949 -3.2494 26 6 7.5752 3.0764 0.0006 27 7 6.3901 2.5062 0.0003 28 6 5.2775 3.2411 -0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.1103 4.1929 0.0014 35 1 6.6165 6.3043 0.0014 36 1 8.9756 6.0899 0.5147 37 1 9.7538 4.4890 0.5145 38 1 9.4819 4.4778 -1.9006 39 1 10.7740 6.9057 -0.8388 40 1 11.5441 5.3095 -1.0051 41 1 11.6856 10.0210 -2.4690 42 1 11.8257 4.1981 -3.2695 43 1 11.4514 5.1705 -4.7914 44 1 12.9883 7.0218 -3.9864 45 1 13.3625 6.0503 -2.4643 46 1 8.4669 2.4669 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364961876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:30 Heat of formation + Delta-G solvation = 41.031038 kcal Electronic energy + Delta-G solvation = -28755.179046 eV Core-core repulsion = 24647.308551 eV Total energy + Delta-G solvation = -4107.870495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.68039 -41.10885 -39.65113 -38.67304 -37.47461 -36.32485 -35.06111 -33.88043 -32.71451 -32.41148 -30.86086 -28.11930 -27.24668 -26.10562 -25.60742 -24.49798 -23.52801 -22.99842 -22.61462 -21.83384 -20.86581 -19.82166 -18.68173 -18.23712 -18.06035 -17.70161 -17.37186 -17.12209 -16.76889 -16.43638 -16.12779 -15.52123 -15.27141 -15.13501 -14.94574 -14.79118 -14.56535 -14.52314 -13.99424 -13.77921 -13.54159 -13.33843 -13.23786 -13.02992 -12.88868 -12.87951 -12.71230 -12.56122 -12.41105 -12.33542 -12.28170 -11.97021 -11.48819 -11.45767 -11.32684 -10.97317 -10.77094 -10.68480 -10.33891 -9.88217 -9.30922 -9.03393 -8.02461 -6.07027 -0.79720 -0.40616 0.67674 0.80438 1.40234 1.45318 1.53710 1.73682 1.82827 2.30604 2.48223 2.62849 2.90771 3.27199 3.28763 3.38063 3.60257 3.71423 3.80108 3.84756 4.02442 4.06660 4.13797 4.26552 4.33191 4.41955 4.43721 4.61280 4.66559 4.75489 4.80465 4.88965 4.92337 4.92893 4.98539 5.01151 5.05451 5.12471 5.18608 5.25932 5.34742 5.49005 5.69306 5.79173 5.92890 6.08602 6.33286 6.38343 6.52771 6.73709 6.85770 6.96392 7.58058 9.06160 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.002192 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.473871 B =12768.383716 C =13557.180026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.549 3.451 5 O -0.542 6.542 6 C -0.321 4.321 7 C 0.167 3.833 8 N -0.331 5.331 9 N -0.306 5.306 10 C 0.183 3.817 11 C -0.161 4.161 12 C 0.117 3.883 13 N -0.682 5.682 14 C 0.125 3.875 15 C 0.023 3.977 16 C -0.475 4.475 17 H 0.043 0.957 18 C 0.026 3.974 19 N -0.908 5.908 20 Si 0.936 3.064 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.287 1.287 24 C -0.190 4.190 25 C -0.167 4.167 26 C 0.216 3.784 27 N -0.487 5.487 28 C 0.315 3.685 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.247 0.753 35 H 0.202 0.798 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.340 0.660 39 H 0.050 0.950 40 H 0.021 0.979 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 -13.989 9.560 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 O -0.271 6.271 4 C 0.396 3.604 5 O -0.433 6.433 6 C -0.336 4.336 7 C -0.016 4.016 8 N -0.151 5.151 9 N -0.072 5.072 10 C 0.047 3.953 11 C -0.167 4.167 12 C -0.013 4.013 13 N -0.313 5.313 14 C -0.004 4.004 15 C 0.023 3.977 16 C -0.514 4.514 17 H 0.061 0.939 18 C -0.173 4.173 19 N -0.547 5.547 20 Si 0.763 3.237 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.213 1.213 24 C -0.227 4.227 25 C -0.205 4.205 26 C 0.037 3.963 27 N -0.198 5.198 28 C 0.080 3.920 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.263 0.737 35 H 0.219 0.781 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.812 -13.135 9.564 22.671 hybrid contribution 0.489 0.237 -0.513 0.747 sum -15.322 -12.898 9.051 21.978 Atomic orbital electron populations 1.21817 0.90002 1.04383 1.03877 1.23269 0.97102 0.79004 1.02349 1.86523 1.22289 1.33669 1.84656 1.19512 0.80807 0.87820 0.72273 1.90868 1.61010 1.42847 1.48589 1.18371 0.88894 0.92972 1.33344 1.24801 1.01815 0.86595 0.88375 1.77644 0.83575 1.22063 1.31859 1.47153 1.07446 1.06865 1.45686 1.22572 0.79297 1.01949 0.91516 1.20630 0.96088 0.94462 1.05509 1.20715 0.88927 1.00575 0.91046 1.60219 1.29461 1.29755 1.11855 1.21180 0.87058 0.96252 0.95937 1.18993 0.91935 0.94732 0.92084 1.20526 1.11757 0.90230 1.28838 0.93878 1.25464 0.96129 0.99771 0.95980 1.70079 1.32975 1.15184 1.36443 0.85862 0.78881 0.79846 0.79085 1.20013 1.20980 1.21326 1.22983 1.06628 0.93513 0.99585 1.22440 0.95026 1.00566 1.02484 1.24254 0.95627 0.92523 0.83933 1.68427 0.97247 1.36437 1.17724 1.20624 0.94877 0.80876 0.95619 0.88246 0.90990 0.91148 0.91756 0.91542 0.73683 0.78141 0.89305 0.90619 0.84159 0.93113 0.96134 0.93554 0.88768 0.91324 0.92961 0.90619 0.76429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.06 0.96 6.20 71.98 0.45 1.41 16 3 O -0.35 -7.86 10.06 -58.07 -0.58 -8.45 16 4 C 0.55 15.72 7.92 69.94 0.55 16.28 16 5 O -0.54 -18.81 16.53 19.37 0.32 -18.49 16 6 C -0.32 -8.92 6.17 -19.90 -0.12 -9.05 16 7 C 0.17 3.68 11.79 85.48 1.01 4.68 16 8 N -0.33 -8.66 12.57 -56.54 -0.71 -9.37 16 9 N -0.31 -8.27 3.86 -191.76 -0.74 -9.01 16 10 C 0.18 4.25 10.94 83.43 0.91 5.16 16 11 C -0.16 -3.30 5.37 -20.02 -0.11 -3.41 16 12 C 0.12 2.45 5.82 85.56 0.50 2.95 16 13 N -0.68 -20.35 6.37 -517.91 -3.30 -23.65 16 14 C 0.12 4.59 5.51 86.30 0.48 5.06 16 15 C 0.02 1.03 1.55 -52.93 -0.08 0.94 16 16 C -0.48 -24.50 8.74 25.60 0.22 -24.28 16 17 H 0.04 2.31 7.82 -2.91 -0.02 2.29 16 18 C 0.03 1.36 5.39 84.65 0.46 1.81 16 19 N -0.91 -49.48 12.92 21.44 0.28 -49.21 16 20 Si 0.94 42.90 29.54 68.60 2.03 44.92 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 C -0.19 -7.31 9.96 30.62 0.30 -7.00 16 25 C -0.17 -7.26 9.41 30.62 0.29 -6.97 16 26 C 0.22 4.39 10.97 85.16 0.93 5.32 16 27 N -0.49 -13.73 10.26 -191.85 -1.97 -15.70 16 28 C 0.31 9.29 7.74 134.02 1.04 10.32 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.25 3.09 8.06 -2.91 -0.02 3.06 16 35 H 0.20 4.09 8.06 -2.91 -0.02 4.07 16 36 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 37 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 38 H 0.34 9.36 8.78 -89.69 -0.79 8.57 16 39 H 0.05 2.17 8.13 -2.39 -0.02 2.15 16 40 H 0.02 0.67 8.09 -2.39 -0.02 0.65 16 41 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 42 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.22 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -71.37 401.96 3.11 -68.26 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.22 Total: 18.12 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 7.57 Total: 2.58 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -6.44 Total: -106.94 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.26 Total: -26.94 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -71.37 3.11 -68.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364961876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.290 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds