Wall clock time and date at job start Sat Apr 11 2020 07:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.04075 * 2 1 4 4 C 1.35317 * 107.74757 * 179.75014 * 3 2 1 5 5 C 1.50704 * 126.04426 * 180.27105 * 4 3 2 6 6 H 1.09001 * 109.46802 * 340.16760 * 5 4 3 7 7 C 1.52998 * 109.47010 * 100.16496 * 5 4 3 8 8 O 1.42904 * 109.47212 * 55.00213 * 7 5 4 9 9 N 1.46496 * 109.47059 * 220.16641 * 5 4 3 10 10 C 1.34780 * 119.99770 * 154.99747 * 9 5 4 11 11 O 1.21589 * 119.99981 * 0.02562 * 10 9 5 12 12 N 1.34773 * 120.00205 * 179.97438 * 10 9 5 13 13 C 1.39941 * 120.00480 * 174.69042 * 12 10 9 14 14 C 1.38868 * 120.06520 * 326.56802 * 13 12 10 15 15 C 1.38123 * 119.92620 * 179.76530 * 14 13 12 16 16 C 1.38277 * 120.06922 * 0.50897 * 15 14 13 17 17 C 1.50698 * 119.93152 * 179.72170 * 16 15 14 18 18 C 1.50703 * 109.47103 * 270.02367 * 17 16 15 19 19 H 1.08004 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00036 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00144 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00031 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47060 * 60.00246 * 22 20 18 24 24 H 1.48498 * 109.47108 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47378 * 300.00621 * 22 20 18 26 26 C 1.38282 * 120.13967 * 359.74173 * 16 15 14 27 27 C 1.38109 * 120.07454 * 0.02562 * 26 16 15 28 28 C 1.39873 * 107.91747 * 0.39217 * 4 3 2 29 29 N 1.30836 * 108.20140 * 359.59891 * 28 4 3 30 30 H 1.09003 * 109.46776 * 269.97930 * 1 2 3 31 31 H 1.09001 * 109.46664 * 29.97304 * 1 2 3 32 32 H 1.09000 * 109.47413 * 149.97726 * 1 2 3 33 33 H 1.08000 * 126.12557 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.47275 * 175.00071 * 7 5 4 35 35 H 1.09000 * 109.47218 * 295.00537 * 7 5 4 36 36 H 0.96697 * 114.00036 * 180.02562 * 8 7 5 37 37 H 0.96995 * 120.00254 * 334.99580 * 9 5 4 38 38 H 0.97003 * 119.99947 * 354.68977 * 12 10 9 39 39 H 1.07995 * 120.04001 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.96191 * 180.25443 * 15 14 13 41 41 H 1.09002 * 109.46801 * 30.01524 * 17 16 15 42 42 H 1.08993 * 109.47679 * 150.01925 * 17 16 15 43 43 H 0.96995 * 120.00411 * 179.97438 * 21 20 18 44 44 H 1.08005 * 119.96132 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.04079 * 179.97438 * 27 26 16 46 46 H 1.08004 * 125.89714 * 179.86456 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5450 0.0134 6 1 4.5014 2.5429 -0.3346 7 6 5.3238 1.6328 1.4363 8 8 5.5644 0.3157 1.9358 9 7 5.7847 0.9739 -0.8734 10 6 6.7207 1.7705 -1.4266 11 8 6.7217 2.9629 -1.1891 12 7 7.6562 1.2450 -2.2421 13 6 8.5590 2.0848 -2.9040 14 6 8.1588 3.3489 -3.3170 15 6 9.0537 4.1772 -3.9657 16 6 10.3436 3.7450 -4.2134 17 6 11.3155 4.6490 -4.9270 18 6 11.2203 4.4159 -6.4128 19 1 10.5257 3.6858 -6.8014 20 6 12.0198 5.1347 -7.2761 21 7 12.8659 6.0233 -6.8029 22 14 11.9022 4.8453 -9.1178 23 1 10.5215 5.1402 -9.5780 24 1 12.8598 5.7361 -9.8210 25 1 12.2321 3.4289 -9.4184 26 6 10.7436 2.4849 -3.8080 27 6 9.8551 1.6536 -3.1546 28 6 3.5346 -0.7323 0.0001 29 7 2.2891 -1.1328 0.0001 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.9282 2.1192 -0.0004 34 1 6.2579 2.1943 1.4276 35 1 4.6019 2.1383 2.0777 36 1 5.9179 0.2948 2.8355 37 1 5.7841 0.0226 -1.0626 38 1 7.7038 0.2847 -2.3703 39 1 7.1501 3.6852 -3.1281 40 1 8.7443 5.1620 -4.2835 41 1 11.0739 5.6887 -4.7062 42 1 12.3288 4.4319 -4.5894 43 1 13.4286 6.5287 -7.4101 44 1 11.7517 2.1501 -4.0033 45 1 10.1679 0.6694 -2.8386 46 1 4.4053 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365532959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:45 Heat of formation + Delta-G solvation = 30.850236 kcal Electronic energy + Delta-G solvation = -28560.823677 eV Core-core repulsion = 24452.511710 eV Total energy + Delta-G solvation = -4108.311967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66244 -40.40916 -38.46772 -37.25520 -35.10356 -34.65133 -33.39312 -32.94173 -31.36935 -30.25285 -30.12670 -28.63503 -26.83443 -26.42630 -23.70050 -22.83398 -22.29042 -21.75681 -20.92828 -20.23489 -20.04028 -18.52174 -17.71705 -17.50896 -16.83217 -16.25236 -15.92886 -15.72461 -15.28251 -14.97864 -14.81709 -14.74118 -14.18729 -14.10292 -14.03350 -13.64834 -13.58995 -13.11441 -13.02840 -12.79462 -12.72419 -12.64948 -12.49456 -12.01240 -11.89644 -11.33121 -11.22048 -10.91905 -10.77002 -10.58917 -10.38041 -10.25546 -10.09112 -9.84520 -9.77102 -9.42297 -9.27014 -9.18786 -8.77338 -8.37446 -8.20321 -7.26894 -5.98867 -4.02768 1.49415 2.02178 2.12691 2.15564 2.36579 2.74156 3.24889 3.35120 3.39035 3.42516 4.01714 4.10745 4.16350 4.43588 4.45239 4.62263 4.64799 4.68069 4.85129 4.93833 4.97194 5.14751 5.21719 5.34870 5.37360 5.48619 5.53416 5.64185 5.70684 6.02221 6.12687 6.17380 6.26504 6.28246 6.35620 6.58649 6.66156 6.74626 7.02348 7.14665 7.24935 7.28996 7.33686 7.36474 7.57788 7.80234 7.93581 7.96577 7.96964 8.38174 8.58009 9.02385 9.60552 11.10574 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.001840 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.402610 B =15213.542748 C =15805.108111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.377 5.377 3 C 0.066 3.934 4 C -0.239 4.239 5 C 0.250 3.750 6 H 0.106 0.894 7 C 0.068 3.932 8 O -0.566 6.566 9 N -0.731 5.731 10 C 0.704 3.296 11 O -0.576 6.576 12 N -0.681 5.681 13 C 0.126 3.874 14 C -0.117 4.117 15 C -0.107 4.107 16 C -0.046 4.046 17 C 0.048 3.952 18 C -0.510 4.510 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.107 4.107 27 C -0.146 4.146 28 C 0.078 3.922 29 N -0.300 5.300 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.175 0.825 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.376 0.624 37 H 0.397 0.603 38 H 0.401 0.599 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.262 0.738 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.954 -13.387 18.362 32.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.159 5.159 3 C -0.081 4.081 4 C -0.252 4.252 5 C 0.143 3.857 6 H 0.123 0.877 7 C -0.011 4.011 8 O -0.370 6.370 9 N -0.386 5.386 10 C 0.404 3.596 11 O -0.453 6.453 12 N -0.328 5.328 13 C 0.033 3.967 14 C -0.137 4.137 15 C -0.126 4.126 16 C -0.047 4.047 17 C 0.011 3.989 18 C -0.549 4.549 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.126 4.126 27 C -0.167 4.167 28 C -0.109 4.109 29 N -0.121 5.121 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.193 0.807 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.222 0.778 37 H 0.231 0.769 38 H 0.235 0.765 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.139 0.861 45 H 0.131 0.869 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.079 -13.337 17.946 32.859 hybrid contribution 0.699 -0.171 -0.560 0.912 sum -23.380 -13.509 17.386 32.115 Atomic orbital electron populations 1.21866 0.74101 1.04608 1.03387 1.48452 1.06677 1.03809 1.56912 1.22273 0.90586 0.93592 1.01617 1.19875 0.93524 0.94271 1.17488 1.18925 0.83158 0.96214 0.87416 0.87671 1.22641 0.99596 0.84419 0.94451 1.86456 1.87707 1.27851 1.35019 1.45030 1.30996 1.11077 1.51535 1.15909 0.79654 0.85385 0.78634 1.90949 1.75492 1.13517 1.65305 1.42471 1.33162 1.09754 1.47407 1.17282 0.88712 0.92196 0.98554 1.20999 1.00295 0.93547 0.98879 1.20983 0.93291 0.99722 0.98604 1.20683 0.95424 0.95029 0.93532 1.18336 0.92701 0.93552 0.94268 1.21045 1.21564 1.21758 0.90490 0.92521 1.25014 0.95302 0.95144 0.98926 1.69947 1.23831 1.24563 1.35022 0.86606 0.77873 0.78094 0.85145 1.20205 1.21294 1.20216 1.20854 0.99236 0.93866 0.98641 1.20705 0.91620 1.00429 1.03948 1.23608 0.94921 0.94263 0.98073 1.77402 1.01699 1.08113 1.24931 0.90740 0.89388 0.89244 0.80741 0.92620 0.93104 0.77810 0.76904 0.76455 0.85779 0.86198 0.95335 0.95360 0.92848 0.86093 0.86899 0.80184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.47 59.85 0.69 1.07 16 2 N -0.38 -2.95 4.01 -68.16 -0.27 -3.23 16 3 C 0.07 0.48 11.40 -17.23 -0.20 0.28 16 4 C -0.24 -2.02 4.84 -105.05 -0.51 -2.53 16 5 C 0.25 2.25 2.80 -69.08 -0.19 2.06 16 6 H 0.11 1.03 7.57 -51.93 -0.39 0.63 16 7 C 0.07 0.57 6.84 37.16 0.25 0.82 16 8 O -0.57 -4.38 12.53 -35.23 -0.44 -4.82 16 9 N -0.73 -7.16 5.01 -59.81 -0.30 -7.46 16 10 C 0.70 9.53 8.26 -86.92 -0.72 8.82 16 11 O -0.58 -9.94 13.70 5.29 0.07 -9.87 16 12 N -0.68 -8.89 5.35 -14.22 -0.08 -8.97 16 13 C 0.13 2.12 6.28 -83.69 -0.53 1.59 16 14 C -0.12 -2.21 8.65 -39.39 -0.34 -2.56 16 15 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 16 C -0.05 -1.03 5.07 -104.59 -0.53 -1.56 16 17 C 0.05 1.26 5.10 -29.03 -0.15 1.12 16 18 C -0.51 -14.44 9.09 -34.44 -0.31 -14.75 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 22 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.11 -2.11 9.69 -39.61 -0.38 -2.49 16 27 C -0.15 -2.45 9.96 -39.39 -0.39 -2.84 16 28 C 0.08 0.71 10.50 -17.36 -0.18 0.53 16 29 N -0.30 -3.07 12.58 30.63 0.39 -2.69 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 1.59 9.12 45.56 0.42 2.01 16 37 H 0.40 3.10 7.65 -40.82 -0.31 2.79 16 38 H 0.40 3.82 8.83 -40.82 -0.36 3.46 16 39 H 0.12 2.33 6.43 -52.49 -0.34 2.00 16 40 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 41 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 44 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 45 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.18 1.36 7.72 -52.48 -0.41 0.96 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -36.70 394.91 -8.52 -45.22 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.58 Total: 6.60 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.97 Total: -11.53 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.47 Total: -48.27 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.37 Total: -14.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.70 -8.52 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365532959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.073 kcal (2) G-P(sol) polarization free energy of solvation -36.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds