Wall clock time and date at job start Sat Apr 11 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.04075 * 2 1 4 4 C 1.35317 * 107.74757 * 179.75014 * 3 2 1 5 5 C 1.50704 * 126.04426 * 180.27105 * 4 3 2 6 6 H 1.09001 * 109.46802 * 340.16760 * 5 4 3 7 7 C 1.52998 * 109.47010 * 100.16496 * 5 4 3 8 8 O 1.42904 * 109.47212 * 55.00213 * 7 5 4 9 9 N 1.46496 * 109.47059 * 220.16641 * 5 4 3 10 10 C 1.34780 * 119.99770 * 154.99747 * 9 5 4 11 11 O 1.21589 * 119.99981 * 0.02562 * 10 9 5 12 12 N 1.34773 * 120.00205 * 179.97438 * 10 9 5 13 13 C 1.39941 * 120.00480 * 174.69042 * 12 10 9 14 14 C 1.38868 * 120.06520 * 326.56802 * 13 12 10 15 15 C 1.38123 * 119.92620 * 179.76530 * 14 13 12 16 16 C 1.38277 * 120.06922 * 0.50897 * 15 14 13 17 17 C 1.50698 * 119.93152 * 179.72170 * 16 15 14 18 18 C 1.50703 * 109.47103 * 270.02367 * 17 16 15 19 19 H 1.08004 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00036 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00144 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00031 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47060 * 60.00246 * 22 20 18 24 24 H 1.48498 * 109.47108 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47378 * 300.00621 * 22 20 18 26 26 C 1.38282 * 120.13967 * 359.74173 * 16 15 14 27 27 C 1.38109 * 120.07454 * 0.02562 * 26 16 15 28 28 C 1.39873 * 107.91747 * 0.39217 * 4 3 2 29 29 N 1.30836 * 108.20140 * 359.59891 * 28 4 3 30 30 H 1.09003 * 109.46776 * 269.97930 * 1 2 3 31 31 H 1.09001 * 109.46664 * 29.97304 * 1 2 3 32 32 H 1.09000 * 109.47413 * 149.97726 * 1 2 3 33 33 H 1.08000 * 126.12557 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.47275 * 175.00071 * 7 5 4 35 35 H 1.09000 * 109.47218 * 295.00537 * 7 5 4 36 36 H 0.96697 * 114.00036 * 180.02562 * 8 7 5 37 37 H 0.96995 * 120.00254 * 334.99580 * 9 5 4 38 38 H 0.97003 * 119.99947 * 354.68977 * 12 10 9 39 39 H 1.07995 * 120.04001 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.96191 * 180.25443 * 15 14 13 41 41 H 1.09002 * 109.46801 * 30.01524 * 17 16 15 42 42 H 1.08993 * 109.47679 * 150.01925 * 17 16 15 43 43 H 0.96995 * 120.00411 * 179.97438 * 21 20 18 44 44 H 1.08005 * 119.96132 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.04079 * 179.97438 * 27 26 16 46 46 H 1.08004 * 125.89714 * 179.86456 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5450 0.0134 6 1 4.5014 2.5429 -0.3346 7 6 5.3238 1.6328 1.4363 8 8 5.5644 0.3157 1.9358 9 7 5.7847 0.9739 -0.8734 10 6 6.7207 1.7705 -1.4266 11 8 6.7217 2.9629 -1.1891 12 7 7.6562 1.2450 -2.2421 13 6 8.5590 2.0848 -2.9040 14 6 8.1588 3.3489 -3.3170 15 6 9.0537 4.1772 -3.9657 16 6 10.3436 3.7450 -4.2134 17 6 11.3155 4.6490 -4.9270 18 6 11.2203 4.4159 -6.4128 19 1 10.5257 3.6858 -6.8014 20 6 12.0198 5.1347 -7.2761 21 7 12.8659 6.0233 -6.8029 22 14 11.9022 4.8453 -9.1178 23 1 10.5215 5.1402 -9.5780 24 1 12.8598 5.7361 -9.8210 25 1 12.2321 3.4289 -9.4184 26 6 10.7436 2.4849 -3.8080 27 6 9.8551 1.6536 -3.1546 28 6 3.5346 -0.7323 0.0001 29 7 2.2891 -1.1328 0.0001 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.9282 2.1192 -0.0004 34 1 6.2579 2.1943 1.4276 35 1 4.6019 2.1383 2.0777 36 1 5.9179 0.2948 2.8355 37 1 5.7841 0.0226 -1.0626 38 1 7.7038 0.2847 -2.3703 39 1 7.1501 3.6852 -3.1281 40 1 8.7443 5.1620 -4.2835 41 1 11.0739 5.6887 -4.7062 42 1 12.3288 4.4319 -4.5894 43 1 13.4286 6.5287 -7.4101 44 1 11.7517 2.1501 -4.0033 45 1 10.1679 0.6694 -2.8386 46 1 4.4053 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365532959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:43 Heat of formation + Delta-G solvation = 3.438050 kcal Electronic energy + Delta-G solvation = -28562.012359 eV Core-core repulsion = 24452.511710 eV Total energy + Delta-G solvation = -4109.500649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.27816 -41.52844 -39.80099 -38.04807 -36.25530 -35.69174 -34.94069 -33.91320 -32.48620 -31.72317 -31.49611 -29.38412 -28.14478 -27.31498 -25.25628 -23.97415 -23.69077 -22.58171 -21.99457 -21.34313 -20.95234 -19.50417 -18.70524 -18.46180 -18.17206 -17.67725 -16.86428 -16.61606 -16.50981 -16.07224 -15.94007 -15.84672 -15.37505 -15.27057 -14.87958 -14.62077 -14.47755 -14.37734 -14.19402 -14.06532 -13.64307 -13.54637 -13.30933 -13.26545 -13.20902 -13.07434 -12.57374 -12.57006 -12.44316 -12.01333 -11.66400 -11.55421 -11.50325 -11.24566 -10.94048 -10.79154 -10.57047 -10.35611 -10.13938 -9.70938 -9.36622 -8.77181 -8.14835 -6.29859 0.54148 0.62924 0.93787 1.41425 1.44495 1.51465 1.52714 1.71919 1.91519 2.13308 2.42713 3.07532 3.13671 3.23395 3.45688 3.61600 4.01317 4.09278 4.15365 4.20926 4.26391 4.38022 4.43327 4.46289 4.53935 4.59032 4.65648 4.70386 4.72329 4.77205 4.79064 4.91682 5.05194 5.17493 5.34469 5.36846 5.46739 5.52337 5.55351 5.66901 5.67663 5.79365 6.02295 6.12724 6.13774 6.17208 6.31155 6.74711 6.82617 6.93461 7.02767 7.38225 7.53408 8.92430 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.001840 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.402610 B =15213.542748 C =15805.108111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.379 5.379 3 C 0.072 3.928 4 C -0.252 4.252 5 C 0.250 3.750 6 H 0.097 0.903 7 C 0.075 3.925 8 O -0.574 6.574 9 N -0.713 5.713 10 C 0.702 3.298 11 O -0.614 6.614 12 N -0.670 5.670 13 C 0.142 3.858 14 C -0.122 4.122 15 C -0.119 4.119 16 C -0.079 4.079 17 C 0.057 3.943 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.966 3.034 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.266 1.266 26 C -0.112 4.112 27 C -0.131 4.131 28 C 0.072 3.928 29 N -0.338 5.338 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.206 0.794 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.391 0.609 37 H 0.409 0.591 38 H 0.422 0.578 39 H 0.125 0.875 40 H 0.109 0.891 41 H -0.001 1.001 42 H 0.006 0.994 43 H 0.265 0.735 44 H 0.125 0.875 45 H 0.157 0.843 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.858 -15.572 18.682 34.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.161 5.161 3 C -0.076 4.076 4 C -0.264 4.264 5 C 0.144 3.856 6 H 0.115 0.885 7 C -0.004 4.004 8 O -0.381 6.381 9 N -0.368 5.368 10 C 0.403 3.597 11 O -0.493 6.493 12 N -0.318 5.318 13 C 0.047 3.953 14 C -0.143 4.143 15 C -0.137 4.137 16 C -0.079 4.079 17 C 0.020 3.980 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.195 4.195 21 N -0.571 5.571 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.190 1.190 26 C -0.131 4.131 27 C -0.152 4.152 28 C -0.114 4.114 29 N -0.159 5.159 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.222 0.778 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.240 0.760 37 H 0.245 0.755 38 H 0.260 0.740 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.017 0.983 42 H 0.024 0.976 43 H 0.074 0.926 44 H 0.143 0.857 45 H 0.175 0.825 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.026 -15.604 18.301 35.437 hybrid contribution 1.157 0.457 -0.509 1.344 sum -24.870 -15.146 17.792 34.124 Atomic orbital electron populations 1.22186 0.72078 1.05871 1.04592 1.48778 1.07905 1.03344 1.56039 1.22785 0.90233 0.94761 0.99850 1.19819 0.93716 0.93906 1.18996 1.18962 0.83210 0.95946 0.87525 0.88469 1.22498 0.98932 0.84590 0.94408 1.86417 1.87870 1.27389 1.36399 1.44919 1.29861 1.11365 1.50606 1.16039 0.79981 0.85104 0.78614 1.90936 1.76406 1.15402 1.66597 1.42289 1.32334 1.10437 1.46767 1.17332 0.89365 0.91660 0.96902 1.20999 0.99885 0.94449 0.98951 1.20904 0.93322 0.99908 0.99605 1.20382 0.95352 0.96097 0.96118 1.18081 0.92671 0.92936 0.94268 1.21371 1.21545 1.21782 0.91808 0.92617 1.25947 0.94765 0.94706 1.04119 1.70079 1.24645 1.25487 1.36857 0.85487 0.78152 0.78482 0.78855 1.19459 1.20637 1.19049 1.20945 1.00158 0.93161 0.98787 1.20983 0.90616 1.01538 1.02034 1.23784 0.95010 0.94728 0.97841 1.77341 1.02428 1.09780 1.26396 0.89546 0.86821 0.89356 0.77755 0.94673 0.91504 0.76037 0.75478 0.73981 0.85752 0.87247 0.98275 0.97550 0.92636 0.85679 0.82545 0.79468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.47 127.77 1.47 1.95 16 2 N -0.38 -5.17 4.01 -369.56 -1.48 -6.65 16 3 C 0.07 0.86 11.40 83.54 0.95 1.82 16 4 C -0.25 -3.77 4.84 -20.14 -0.10 -3.86 16 5 C 0.25 4.09 2.80 44.25 0.12 4.21 16 6 H 0.10 1.78 7.57 -2.39 -0.02 1.76 16 7 C 0.08 1.13 6.84 71.98 0.49 1.62 16 8 O -0.57 -7.76 12.53 -148.98 -1.87 -9.63 16 9 N -0.71 -12.53 5.01 -461.41 -2.31 -14.84 16 10 C 0.70 17.75 8.26 179.05 1.48 19.23 16 11 O -0.61 -20.69 13.70 -4.00 -0.05 -20.74 16 12 N -0.67 -15.65 5.35 -317.18 -1.70 -17.35 16 13 C 0.14 4.51 6.28 38.15 0.24 4.75 16 14 C -0.12 -4.61 8.65 22.39 0.19 -4.41 16 15 C -0.12 -5.12 9.69 22.25 0.22 -4.90 16 16 C -0.08 -3.63 5.07 -19.85 -0.10 -3.74 16 17 C 0.06 3.18 5.10 29.10 0.15 3.32 16 18 C -0.53 -30.72 9.09 25.60 0.23 -30.49 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 20 C 0.00 0.15 5.46 84.66 0.46 0.61 16 21 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 22 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C -0.11 -4.35 9.69 22.25 0.22 -4.13 16 27 C -0.13 -4.05 9.96 22.39 0.22 -3.83 16 28 C 0.07 1.20 10.50 85.24 0.89 2.09 16 29 N -0.34 -6.46 12.58 -57.02 -0.72 -7.18 16 30 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.21 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.39 2.56 9.12 -74.06 -0.68 1.89 16 37 H 0.41 5.36 7.65 -92.71 -0.71 4.65 16 38 H 0.42 6.43 8.83 -92.71 -0.82 5.61 16 39 H 0.12 4.67 6.43 -2.91 -0.02 4.66 16 40 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.00 -0.06 8.08 -2.39 -0.02 -0.08 16 42 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 43 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 45 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 46 H 0.19 2.54 7.72 -2.91 -0.02 2.52 16 Total: -1.00 -81.74 394.91 0.16 -81.58 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -1.16 Total: 20.41 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 7.14 Total: -15.76 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -5.92 Total: -102.77 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.92 Total: -30.37 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -81.74 0.16 -81.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365532959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.017 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds