Wall clock time and date at job start Sat Apr 11 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21275 * 120.00259 * 2 1 4 4 N 1.34787 * 119.99463 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99601 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.46824 * 205.00014 * 5 4 2 7 7 C 1.53003 * 109.46974 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46925 * 60.00260 * 7 6 5 9 9 N 1.46501 * 109.47096 * 59.99933 * 8 7 6 10 10 S 1.65596 * 119.99816 * 144.99815 * 9 8 7 11 11 O 1.42096 * 104.27984 * 308.93180 * 10 9 8 12 12 O 1.42097 * 104.27627 * 181.06853 * 10 9 8 13 13 C 1.81409 * 104.44769 * 65.00163 * 10 9 8 14 14 C 1.53006 * 109.46919 * 172.69302 * 13 10 9 15 15 C 1.50708 * 115.54572 * 65.16191 * 14 13 10 16 16 H 1.08002 * 119.99475 * 264.90623 * 15 14 13 17 17 C 1.37868 * 119.99890 * 84.90855 * 15 14 13 18 18 N 1.31520 * 120.00609 * 352.84618 * 17 15 14 19 19 Si 1.86802 * 120.00134 * 172.84157 * 17 15 14 20 20 H 1.48495 * 109.47010 * 89.99835 * 19 17 15 21 21 H 1.48494 * 109.47355 * 210.00281 * 19 17 15 22 22 H 1.48505 * 109.46929 * 330.00107 * 19 17 15 23 23 C 1.52992 * 117.50096 * 279.49121 * 14 13 10 24 24 C 1.52992 * 117.49701 * 210.82788 * 14 13 10 25 25 C 1.52996 * 109.46728 * 299.99720 * 8 7 6 26 26 C 1.52996 * 109.46912 * 85.00098 * 5 4 2 27 27 H 1.09002 * 109.47509 * 240.00157 * 1 2 3 28 28 H 1.09002 * 109.47329 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47238 * 120.00108 * 1 2 3 30 30 H 0.96993 * 120.00164 * 0.02562 * 4 2 1 31 31 H 1.09000 * 109.46698 * 325.00287 * 5 4 2 32 32 H 1.09001 * 109.47123 * 60.00625 * 6 5 4 33 33 H 1.08996 * 109.47622 * 300.00145 * 6 5 4 34 34 H 1.08995 * 109.47283 * 299.99994 * 7 6 5 35 35 H 1.08996 * 109.46924 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47037 * 180.02562 * 8 7 6 37 37 H 0.96995 * 119.99974 * 325.00167 * 9 8 7 38 38 H 1.08995 * 109.46851 * 292.69444 * 13 10 9 39 39 H 1.09001 * 109.46765 * 52.69509 * 13 10 9 40 40 H 0.96994 * 120.00596 * 185.04978 * 18 17 15 41 41 H 1.09008 * 117.49794 * 0.02562 * 23 14 13 42 42 H 1.09001 * 117.50256 * 145.01844 * 23 14 13 43 43 H 1.09007 * 117.50002 * 214.98345 * 24 14 13 44 44 H 1.09002 * 117.50024 * 359.97438 * 24 14 13 45 45 H 1.09001 * 109.46769 * 179.97438 * 25 8 7 46 46 H 1.08996 * 109.47762 * 300.00004 * 25 8 7 47 47 H 1.08995 * 109.47396 * 300.00139 * 26 5 4 48 48 H 1.09004 * 109.47132 * 59.99617 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1674 0.0005 5 6 3.6458 -1.1674 0.0011 6 6 4.1559 -2.4749 -0.6080 7 6 5.6860 -2.4747 -0.6080 8 6 6.1959 -2.3484 0.8290 9 7 5.7077 -3.4796 1.6216 10 16 6.6572 -4.1258 2.8145 11 8 7.9045 -4.3667 2.1778 12 8 5.8828 -5.1963 3.3374 13 6 6.8136 -2.7961 4.0386 14 6 7.5231 -3.3307 5.2843 15 6 8.9555 -3.7547 5.0848 16 1 9.1893 -4.7901 4.8854 17 6 9.9672 -2.8209 5.1570 18 7 9.6762 -1.5424 5.2590 19 14 11.7516 -3.3716 5.1099 20 1 12.2218 -3.4069 3.7018 21 1 12.5845 -2.4183 5.8862 22 1 11.8670 -4.7276 5.7044 23 6 6.6850 -4.1236 6.2891 24 6 7.1521 -2.7066 6.6310 25 6 5.6857 -1.0409 1.4380 26 6 4.1552 -1.0414 1.4383 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 1.6958 -2.0073 0.0005 31 1 4.0093 -0.3257 -0.5884 32 1 3.7931 -2.5646 -1.6319 33 1 3.7924 -3.3165 -0.0186 34 1 6.0492 -1.6331 -1.1978 35 1 6.0494 -3.4059 -1.0424 36 1 7.2859 -2.3478 0.8290 37 1 4.8283 -3.8501 1.4475 38 1 7.3938 -1.9773 3.6132 39 1 5.8220 -2.4354 4.3118 40 1 10.3847 -0.8804 5.2360 41 1 5.6282 -4.2649 6.0624 42 1 7.1696 -4.9518 6.8062 43 1 7.9439 -2.6030 7.3730 44 1 6.4029 -1.9148 6.6295 45 1 6.0487 -0.9512 2.4619 46 1 6.0490 -0.1992 0.8484 47 1 3.7917 -0.1100 1.8722 48 1 3.7915 -1.8831 2.0278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424147500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:56 Heat of formation + Delta-G solvation = -105.012706 kcal Electronic energy + Delta-G solvation = -29741.715166 eV Core-core repulsion = 25730.662939 eV Total energy + Delta-G solvation = -4011.052226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.27675 -38.66281 -36.75987 -36.23989 -35.13893 -34.96957 -32.39544 -32.04338 -31.00699 -30.19464 -28.18416 -27.86268 -25.46353 -22.92173 -22.56294 -21.21509 -20.72915 -20.12191 -19.48611 -18.54768 -17.28611 -17.03949 -16.62948 -16.41575 -15.78423 -15.33948 -15.18914 -14.82511 -14.67230 -14.47762 -14.19605 -14.02334 -13.80004 -13.20071 -13.15110 -13.04278 -12.69774 -12.53889 -12.40694 -12.30319 -11.93659 -11.81711 -11.44567 -11.31300 -11.26932 -11.10661 -11.05635 -10.97827 -10.93972 -10.61942 -10.58891 -10.52747 -10.44813 -10.10044 -10.03393 -9.72319 -9.32093 -9.11689 -8.95878 -8.56073 -8.09544 -6.14050 -4.24943 1.08815 2.41588 2.96259 3.30696 3.36331 3.41249 3.46387 4.37075 4.43106 4.52422 4.55362 4.60073 4.79453 4.92731 4.96406 4.99913 5.05096 5.09931 5.14827 5.20259 5.26027 5.33735 5.35293 5.37119 5.51542 5.62246 5.70902 5.81375 5.88920 5.92569 5.97374 6.05172 6.11605 6.19930 6.26988 6.34152 6.37194 6.40869 6.61687 6.72016 6.98928 7.22863 7.26290 7.30097 7.39345 7.79922 7.99978 8.20268 8.80428 9.46426 10.93401 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.003160 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.949655 B = 8858.919798 C = 8999.804091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.509 3.491 3 O -0.545 6.545 4 N -0.729 5.729 5 C 0.142 3.858 6 C -0.126 4.126 7 C -0.117 4.117 8 C 0.147 3.853 9 N -1.125 6.125 10 S 2.606 3.394 11 O -0.952 6.952 12 O -0.977 6.977 13 C -0.553 4.553 14 C 0.044 3.956 15 C -0.517 4.517 16 H 0.067 0.933 17 C 0.083 3.917 18 N -0.873 5.873 19 Si 0.890 3.110 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.208 4.208 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.126 4.126 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.399 0.601 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.406 0.594 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 1.552 -11.885 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.296 3.704 3 O -0.423 6.423 4 N -0.380 5.380 5 C 0.038 3.962 6 C -0.164 4.164 7 C -0.156 4.156 8 C 0.039 3.961 9 N -0.882 5.882 10 S 2.703 3.297 11 O -0.941 6.941 12 O -0.967 6.967 13 C -0.686 4.686 14 C 0.042 3.958 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.509 5.509 19 Si 0.717 3.283 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.195 1.195 23 C -0.246 4.246 24 C -0.180 4.180 25 C -0.183 4.183 26 C -0.165 4.165 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.233 0.767 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.239 0.761 38 H 0.152 0.848 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.272 1.688 -11.828 19.391 hybrid contribution 0.092 0.033 0.167 0.194 sum -15.180 1.721 -11.661 19.219 Atomic orbital electron populations 1.21930 0.91898 1.05493 1.04177 1.20812 0.90560 0.83623 0.75449 1.90737 1.70848 1.31407 1.49261 1.46178 1.07498 1.08652 1.75675 1.21070 0.78882 0.98956 0.97295 1.21791 0.96747 0.96768 1.01126 1.21708 0.94346 1.03434 0.96148 1.20791 0.99501 0.85083 0.90705 1.56073 1.32587 1.46874 1.52659 1.05145 0.73480 0.76301 0.74768 1.93534 1.43262 1.83945 1.73406 1.93498 1.70938 1.51954 1.80320 1.30060 1.06693 1.17334 1.14551 1.18269 0.93451 0.98994 0.85086 1.20521 0.88265 0.95188 1.51453 0.91444 1.24941 0.99242 0.94773 0.93277 1.69972 1.33081 1.00034 1.47790 0.86595 0.84287 0.78838 0.78556 1.20013 1.21080 1.19469 1.23187 0.98381 0.95708 1.07275 1.22544 1.01277 0.93043 1.01139 1.22173 0.95359 0.97727 1.03056 1.21857 0.95946 1.02612 0.96052 0.89387 0.89063 0.89531 0.76661 0.89297 0.91160 0.91232 0.90353 0.90384 0.88278 0.76073 0.84757 0.88301 0.92722 0.90772 0.89585 0.89606 0.91576 0.90128 0.90424 0.91405 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 10.32 36.00 0.37 -0.59 16 2 C 0.51 4.90 7.90 -10.98 -0.09 4.82 16 3 O -0.55 -7.90 16.75 5.56 0.09 -7.81 16 4 N -0.73 -5.65 5.08 -53.81 -0.27 -5.92 16 5 C 0.14 1.32 2.45 -67.93 -0.17 1.15 16 6 C -0.13 -0.98 5.20 -26.73 -0.14 -1.12 16 7 C -0.12 -1.09 5.63 -26.73 -0.15 -1.24 16 8 C 0.15 1.81 3.02 -67.93 -0.20 1.60 16 9 N -1.13 -15.41 4.63 -4.89 -0.02 -15.43 16 10 S 2.61 50.74 5.16 -107.50 -0.55 50.19 16 11 O -0.95 -22.08 17.12 -57.54 -0.98 -23.07 16 12 O -0.98 -20.92 18.08 -57.54 -1.04 -21.96 16 13 C -0.55 -11.25 4.82 37.16 0.18 -11.07 16 14 C 0.04 1.06 1.33 -155.66 -0.21 0.86 16 15 C -0.52 -14.04 8.23 -34.44 -0.28 -14.32 16 16 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 17 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 18 N -0.87 -23.74 12.96 55.43 0.72 -23.02 16 19 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.21 -4.55 9.96 -26.70 -0.27 -4.81 16 24 C -0.14 -3.19 9.47 -26.70 -0.25 -3.44 16 25 C -0.14 -1.70 5.60 -26.71 -0.15 -1.85 16 26 C -0.13 -1.37 5.34 -26.71 -0.14 -1.51 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.55 8.12 -51.93 -0.42 0.12 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.40 1.94 8.60 -40.82 -0.35 1.59 16 31 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.50 6.51 -51.93 -0.34 0.16 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.37 7.48 -51.93 -0.39 0.98 16 37 H 0.41 4.59 6.78 -34.47 -0.23 4.36 16 38 H 0.13 2.82 7.26 -51.93 -0.38 2.44 16 39 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 40 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 41 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 42 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.08 1.07 6.02 -51.93 -0.31 0.76 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -35.24 394.89 -10.55 -45.79 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.82 Total: 8.42 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -1.59 Total: -29.39 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.42 Total: -44.37 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -1.93 Total: -52.83 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 50.74 SS G_CDS: -0.55 Total: 50.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.24 -10.55 -45.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424147500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.224 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds