Wall clock time and date at job start Sat Apr 11 2020 07:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 119.99808 * 2 1 4 4 N 1.34772 * 120.00278 * 180.02562 * 2 1 3 5 5 C 1.46927 * 120.63014 * 359.97438 * 4 2 1 6 6 C 1.53186 * 108.77558 * 126.41364 * 5 4 2 7 7 C 1.53037 * 109.34218 * 54.62296 * 6 5 4 8 8 C 1.53045 * 109.53641 * 298.68630 * 7 6 5 9 9 H 1.09008 * 109.49323 * 301.34798 * 8 7 6 10 10 C 1.52997 * 109.49910 * 181.28365 * 8 7 6 11 11 N 1.46498 * 109.46994 * 175.06365 * 10 8 7 12 12 S 1.65600 * 119.99913 * 164.72698 * 11 10 8 13 13 O 1.42099 * 104.28038 * 181.34282 * 12 11 10 14 14 O 1.42105 * 104.27427 * 309.20133 * 12 11 10 15 15 C 1.81401 * 104.45369 * 65.27053 * 12 11 10 16 16 C 1.53002 * 109.47319 * 173.81915 * 15 12 11 17 17 C 1.50704 * 115.54968 * 65.19338 * 16 15 12 18 18 H 1.07996 * 120.00348 * 264.78671 * 17 16 15 19 19 C 1.37883 * 119.99842 * 84.78408 * 17 16 15 20 20 N 1.31520 * 119.99836 * 352.22698 * 19 17 16 21 21 Si 1.86795 * 119.99948 * 172.22498 * 19 17 16 22 22 H 1.48498 * 109.47026 * 59.99890 * 21 19 17 23 23 H 1.48493 * 109.47213 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47240 * 300.00505 * 21 19 17 25 25 C 1.53000 * 117.49748 * 279.52417 * 16 15 12 26 26 C 1.52999 * 117.49662 * 210.86462 * 16 15 12 27 27 C 1.46921 * 120.63243 * 180.02562 * 4 2 1 28 28 H 1.09005 * 109.47205 * 239.99900 * 1 2 3 29 29 H 1.08998 * 109.47569 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47070 * 119.99892 * 1 2 3 31 31 H 1.08996 * 109.58884 * 246.20405 * 5 4 2 32 32 H 1.09005 * 109.58900 * 6.62912 * 5 4 2 33 33 H 1.09004 * 109.49676 * 174.58789 * 6 5 4 34 34 H 1.08998 * 109.50159 * 294.64871 * 6 5 4 35 35 H 1.09001 * 109.49032 * 178.64632 * 7 6 5 36 36 H 1.09001 * 109.43567 * 58.68103 * 7 6 5 37 37 H 1.09002 * 109.47039 * 55.06135 * 10 8 7 38 38 H 1.09000 * 109.47118 * 295.05911 * 10 8 7 39 39 H 0.96994 * 120.00119 * 344.99451 * 11 10 8 40 40 H 1.09003 * 109.46995 * 293.82067 * 15 12 11 41 41 H 1.08997 * 109.46864 * 53.81538 * 15 12 11 42 42 H 0.96999 * 119.99090 * 185.02594 * 20 19 17 43 43 H 1.08996 * 117.49846 * 0.02562 * 25 16 15 44 44 H 1.09000 * 117.49725 * 145.02107 * 25 16 15 45 45 H 1.08998 * 117.49705 * 214.97776 * 26 16 15 46 46 H 1.08996 * 117.49960 * 359.97438 * 26 16 15 47 47 H 1.09000 * 109.58977 * 113.79700 * 27 4 2 48 48 H 1.08999 * 109.58748 * 353.36518 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4604 -2.4476 -0.0005 6 6 1.9684 -3.2992 -1.1681 7 6 3.4898 -3.4343 -1.0725 8 6 4.1336 -2.0491 -1.1681 9 1 3.8500 -1.5804 -2.1105 10 6 5.6560 -2.1881 -1.1046 11 7 6.2751 -0.8770 -1.3140 12 16 7.8687 -0.6429 -0.9294 13 8 8.1044 0.7258 -1.2300 14 8 7.9837 -1.1314 0.4001 15 6 8.7742 -1.7126 -2.0811 16 6 10.2771 -1.4695 -1.9286 17 6 10.8668 -1.8588 -0.5975 18 1 10.9832 -1.1175 0.1792 19 6 11.2575 -3.1616 -0.3712 20 7 10.9778 -4.0950 -1.2545 21 14 12.1843 -3.6009 1.1901 22 1 11.3497 -3.2662 2.3719 23 1 12.4876 -5.0545 1.1933 24 1 13.4528 -2.8309 1.2460 25 6 10.8703 -0.2482 -2.6340 26 6 11.1521 -1.6541 -3.1701 27 6 3.6500 -1.1833 0.0000 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6426 -2.9695 0.9389 32 1 0.3921 -2.2658 -0.1186 33 1 1.5119 -4.2880 -1.1228 34 1 1.7042 -2.8194 -2.1104 35 1 3.8514 -4.0599 -1.8887 36 1 3.7541 -3.8925 -0.1195 37 1 5.9907 -2.8762 -1.8809 38 1 5.9451 -2.5744 -0.1273 39 1 5.7506 -0.1449 -1.6743 40 1 8.5507 -2.7562 -1.8598 41 1 8.4712 -1.4850 -3.1030 42 1 11.1874 -5.0224 -1.0629 43 1 10.1899 0.3822 -3.2063 44 1 11.6873 0.2734 -2.1355 45 1 12.1544 -2.0567 -3.0240 46 1 10.6572 -1.9491 -4.0953 47 1 4.0106 -1.6022 0.9395 48 1 4.0267 -0.1672 -0.1178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463633657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:58 Heat of formation + Delta-G solvation = -121.974357 kcal Electronic energy + Delta-G solvation = -29209.252284 eV Core-core repulsion = 25197.464545 eV Total energy + Delta-G solvation = -4011.787739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21794 -38.90216 -38.57174 -37.94897 -36.82532 -36.42541 -34.08740 -33.77562 -32.17020 -30.48289 -29.85935 -27.49352 -26.56204 -26.11923 -23.10391 -23.00087 -21.83909 -21.39188 -20.22171 -19.92554 -18.47235 -18.35639 -18.00437 -17.25381 -17.08582 -16.74391 -16.68200 -16.42611 -15.91775 -15.76349 -15.49307 -15.03221 -14.89221 -14.61321 -14.26390 -14.14440 -13.88167 -13.73317 -13.66516 -13.44359 -13.23492 -13.13122 -13.01291 -12.91996 -12.91218 -12.85271 -12.66420 -12.43880 -12.23185 -12.09226 -11.91726 -11.84892 -11.64091 -11.56642 -11.42926 -10.88679 -10.86271 -10.55927 -10.49626 -9.87623 -9.66724 -8.19583 -6.34090 -0.51868 1.39327 1.40672 1.48342 1.60452 2.01283 2.05623 2.39838 2.93947 3.07366 3.37680 3.42649 3.61370 3.69640 3.79843 3.88645 4.00865 4.12088 4.18515 4.29303 4.36424 4.43984 4.49566 4.53864 4.54814 4.59847 4.62128 4.65427 4.70205 4.83161 4.85038 4.87809 4.93248 4.96957 5.04912 5.17192 5.18518 5.20494 5.28195 5.45757 5.47812 5.52312 5.57989 5.71358 6.09642 6.22486 6.44053 6.71197 7.15769 7.37874 8.87320 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.002950 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.078652 B = 9489.154940 C =10029.575873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.496 3.504 3 O -0.608 6.608 4 N -0.611 5.611 5 C 0.097 3.903 6 C -0.128 4.128 7 C -0.118 4.118 8 C -0.093 4.093 9 H 0.086 0.914 10 C 0.112 3.888 11 N -1.118 6.118 12 S 2.620 3.380 13 O -1.001 7.001 14 O -0.993 6.993 15 C -0.548 4.548 16 C 0.011 3.989 17 C -0.539 4.539 18 H 0.046 0.954 19 C 0.046 3.954 20 N -0.889 5.889 21 Si 0.934 3.066 22 H -0.278 1.278 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.201 4.201 26 C -0.136 4.136 27 C 0.106 3.894 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.419 0.581 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.267 0.733 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.065 0.935 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.549 -3.752 -3.266 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.287 3.713 3 O -0.490 6.490 4 N -0.343 5.343 5 C -0.024 4.024 6 C -0.166 4.166 7 C -0.157 4.157 8 C -0.114 4.114 9 H 0.105 0.895 10 C -0.014 4.014 11 N -0.879 5.879 12 S 2.718 3.282 13 O -0.991 6.991 14 O -0.983 6.983 15 C -0.681 4.681 16 C 0.009 3.991 17 C -0.576 4.576 18 H 0.064 0.936 19 C -0.158 4.158 20 N -0.525 5.525 21 Si 0.759 3.241 22 H -0.203 1.203 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.238 4.238 26 C -0.175 4.175 27 C -0.017 4.017 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.254 0.746 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.780 -2.992 -2.539 24.101 hybrid contribution 0.926 -0.224 0.347 1.014 sum -22.854 -3.215 -2.191 23.182 Atomic orbital electron populations 1.21955 0.87755 1.05975 1.06492 1.21819 0.92656 0.82437 0.74387 1.90715 1.72287 1.33286 1.52717 1.48329 1.06326 1.07312 1.72363 1.22165 0.97997 0.82306 0.99965 1.21901 0.94732 1.01498 0.98439 1.21616 0.96094 0.94148 1.03794 1.21641 0.92559 0.98256 0.98930 0.89545 1.21576 0.93896 0.83360 1.02606 1.55505 1.28808 1.20370 1.83229 1.04415 0.73449 0.74489 0.75833 1.93461 1.85200 1.33973 1.86467 1.93476 1.85689 1.82527 1.36606 1.29836 1.07959 1.15367 1.14932 1.18405 0.87900 0.98989 0.93781 1.20671 1.43392 0.95401 0.98130 0.93598 1.25483 0.95281 0.96225 0.98778 1.70006 1.46476 1.00734 1.35264 0.85983 0.79595 0.77718 0.80791 1.20319 1.19559 1.19545 1.23248 1.04131 0.91146 1.05251 1.22515 1.00464 0.97406 0.97079 1.21605 0.80462 1.00867 0.98762 0.86855 0.89646 0.86582 0.90253 0.86448 0.87728 0.91192 0.89698 0.91026 0.89199 0.91221 0.74585 0.85383 0.84724 0.92414 0.88439 0.90099 0.91477 0.89189 0.91637 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.67 71.24 0.62 -0.97 16 2 C 0.50 10.68 7.81 87.66 0.68 11.37 16 3 O -0.61 -20.36 16.50 -3.03 -0.05 -20.41 16 4 N -0.61 -11.02 2.97 -818.86 -2.43 -13.45 16 5 C 0.10 0.81 6.34 86.36 0.55 1.36 16 6 C -0.13 -0.95 6.08 30.67 0.19 -0.76 16 7 C -0.12 -1.47 5.17 30.62 0.16 -1.31 16 8 C -0.09 -1.75 2.36 -10.70 -0.03 -1.77 16 9 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 10 C 0.11 2.73 5.53 86.38 0.48 3.21 16 11 N -1.12 -33.36 5.50 -187.50 -1.03 -34.39 16 12 S 2.62 108.07 5.19 -56.49 -0.29 107.78 16 13 O -1.00 -45.80 18.08 -127.65 -2.31 -48.10 16 14 O -0.99 -49.14 17.15 -127.65 -2.19 -51.33 16 15 C -0.55 -22.37 5.94 71.98 0.43 -21.95 16 16 C 0.01 0.56 1.32 -52.93 -0.07 0.49 16 17 C -0.54 -30.12 8.18 25.60 0.21 -29.91 16 18 H 0.05 2.69 7.83 -2.91 -0.02 2.66 16 19 C 0.05 2.49 5.38 84.66 0.46 2.95 16 20 N -0.89 -48.22 12.98 21.45 0.28 -47.94 16 21 Si 0.93 43.96 29.55 68.60 2.03 45.99 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 C -0.20 -8.79 9.96 30.62 0.30 -8.49 16 26 C -0.14 -6.07 9.49 30.62 0.29 -5.78 16 27 C 0.11 2.49 5.54 86.38 0.48 2.97 16 28 H 0.11 0.53 7.94 -2.38 -0.02 0.52 16 29 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 30 H 0.12 0.48 7.69 -2.39 -0.02 0.46 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 0.28 5.93 -2.38 -0.01 0.26 16 33 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.92 7.68 -2.39 -0.02 1.90 16 39 H 0.42 11.21 8.37 -96.75 -0.81 10.40 16 40 H 0.13 5.36 8.14 -2.39 -0.02 5.34 16 41 H 0.13 4.42 8.09 -2.39 -0.02 4.40 16 42 H 0.27 13.71 8.32 -92.71 -0.77 12.94 16 43 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 44 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 45 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.06 1.91 6.58 -2.39 -0.02 1.90 16 Total: -1.00 -81.07 399.41 -1.12 -82.18 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.14 Total: 28.26 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 4.74 Total: -48.59 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -3.18 Total: -95.78 kcal Atomic # 8 Polarization: -115.29 SS G_CDS: -4.55 Total: -119.84 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 108.07 SS G_CDS: -0.29 Total: 107.78 kcal Total: -81.07 -1.12 -82.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463633657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.790 kcal (2) G-P(sol) polarization free energy of solvation -81.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds