Wall clock time and date at job start Sat Apr 11 2020 07:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21278 * 119.99671 * 2 1 4 4 N 1.34774 * 119.99846 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.63430 * 5.59643 * 4 2 1 6 6 C 1.53195 * 108.77815 * 233.63213 * 5 4 2 7 7 C 1.53039 * 109.33799 * 305.37895 * 6 5 4 8 8 C 1.53041 * 109.53921 * 61.31644 * 7 6 5 9 9 H 1.09008 * 109.49491 * 58.64658 * 8 7 6 10 10 C 1.52994 * 109.49745 * 178.71574 * 8 7 6 11 11 N 1.46507 * 109.47047 * 184.93558 * 10 8 7 12 12 S 1.65603 * 119.99873 * 164.99895 * 11 10 8 13 13 O 1.42103 * 104.27494 * 308.92946 * 12 11 10 14 14 O 1.42100 * 104.27423 * 181.07026 * 12 11 10 15 15 C 1.81397 * 104.44800 * 65.00196 * 12 11 10 16 16 C 1.53002 * 109.46954 * 185.10477 * 15 12 11 17 17 C 1.50706 * 115.56027 * 330.46961 * 16 15 12 18 18 H 1.07997 * 119.99981 * 89.37993 * 17 16 15 19 19 C 1.37878 * 119.99738 * 269.37981 * 17 16 15 20 20 N 1.31508 * 120.00163 * 5.04466 * 19 17 16 21 21 Si 1.86801 * 119.99644 * 185.05125 * 19 17 16 22 22 H 1.48498 * 109.47286 * 60.00021 * 21 19 17 23 23 H 1.48500 * 109.47001 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46940 * 299.99924 * 21 19 17 25 25 C 1.53001 * 117.50061 * 184.77877 * 16 15 12 26 26 C 1.52998 * 117.49958 * 116.15599 * 16 15 12 27 27 C 1.46924 * 120.63010 * 185.62086 * 4 2 1 28 28 H 1.09002 * 109.46749 * 185.47335 * 1 2 3 29 29 H 1.08994 * 109.47093 * 305.47787 * 1 2 3 30 30 H 1.09003 * 109.46411 * 65.47780 * 1 2 3 31 31 H 1.09003 * 109.58696 * 353.42160 * 5 4 2 32 32 H 1.09000 * 109.58691 * 113.83887 * 5 4 2 33 33 H 1.08999 * 109.49777 * 65.31627 * 6 5 4 34 34 H 1.09004 * 109.49448 * 185.41084 * 6 5 4 35 35 H 1.08997 * 109.43015 * 301.31340 * 7 6 5 36 36 H 1.08993 * 109.48350 * 181.35080 * 7 6 5 37 37 H 1.08995 * 109.47481 * 64.93670 * 10 8 7 38 38 H 1.08995 * 109.47107 * 304.93452 * 10 8 7 39 39 H 0.96999 * 119.99913 * 345.00296 * 11 10 8 40 40 H 1.08990 * 109.47459 * 65.10406 * 15 12 11 41 41 H 1.09004 * 109.46987 * 305.09903 * 15 12 11 42 42 H 0.96999 * 120.00424 * 174.99880 * 20 19 17 43 43 H 1.09001 * 117.49651 * 145.02025 * 25 16 15 44 44 H 1.09003 * 117.49370 * 0.02562 * 25 16 15 45 45 H 1.09002 * 117.50037 * 0.02562 * 26 16 15 46 46 H 1.08997 * 117.49986 * 214.98128 * 26 16 15 47 47 H 1.09005 * 109.58664 * 6.58092 * 27 4 2 48 48 H 1.08999 * 109.70426 * 246.22821 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4656 -2.4446 -0.1222 6 6 1.8746 -3.3526 1.0419 7 6 3.3989 -3.4860 1.0692 8 6 4.0295 -2.1084 1.2857 9 1 3.6660 -1.6850 2.2221 10 6 5.5519 -2.2473 1.3448 11 7 6.1485 -0.9490 1.6690 12 16 7.7270 -0.8632 2.1624 13 8 7.8179 -1.8153 3.2133 14 8 7.9431 0.5200 2.4062 15 6 8.6821 -1.4124 0.7214 16 6 10.1635 -1.4989 1.0943 17 6 10.6216 -0.5416 2.1642 18 1 10.5743 -0.8307 3.2037 19 6 11.1013 0.7033 1.8160 20 7 11.0669 1.0936 0.5606 21 14 11.8001 1.8353 3.1273 22 1 12.9569 1.1762 3.7850 23 1 12.2447 3.1053 2.4992 24 1 10.7535 2.1245 4.1404 25 6 11.1541 -1.8385 -0.0212 26 6 10.8234 -2.8786 1.0511 27 6 3.6448 -1.1864 0.1244 28 1 -0.3633 -1.0230 0.0980 29 1 -0.3633 0.5964 0.8368 30 1 -0.3632 0.4266 -0.9350 31 1 0.3908 -2.2665 -0.0865 32 1 1.7279 -2.9210 -1.0669 33 1 1.5310 -2.9179 1.9805 34 1 1.4255 -4.3371 0.9105 35 1 3.7439 -3.8983 0.1211 36 1 3.6911 -4.1508 1.8820 37 1 5.9237 -2.5867 0.3781 38 1 5.8210 -2.9726 2.1126 39 1 5.6188 -0.1398 1.5946 40 1 8.5535 -0.6995 -0.0930 41 1 8.3294 -2.3938 0.4042 42 1 11.3365 1.9953 0.3254 43 1 12.1372 -1.3695 0.0189 44 1 10.7505 -1.9998 -1.0208 45 1 10.2023 -3.7246 0.7566 46 1 11.5889 -3.0939 1.7965 47 1 4.0080 -0.1779 0.3227 48 1 4.0869 -1.5587 -0.7997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463633675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:02 Heat of formation + Delta-G solvation = -88.843375 kcal Electronic energy + Delta-G solvation = -29293.249598 eV Core-core repulsion = 25282.898526 eV Total energy + Delta-G solvation = -4010.351072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48867 -38.04878 -36.69223 -36.03740 -35.45137 -34.80609 -32.96903 -32.00269 -31.47291 -29.80081 -28.18101 -25.72985 -25.48351 -25.40009 -22.42857 -21.15205 -20.90972 -19.59252 -19.29799 -18.50462 -17.50147 -16.79359 -16.30523 -16.29602 -15.85739 -15.68481 -15.10829 -14.93370 -14.61151 -14.42511 -14.17616 -13.72930 -13.66436 -13.57180 -13.51394 -13.34994 -12.94290 -12.87874 -12.34964 -12.27378 -11.98666 -11.73898 -11.60977 -11.33620 -11.21881 -11.01857 -11.00781 -10.92948 -10.88302 -10.80641 -10.60894 -10.48865 -10.26401 -10.05874 -9.98367 -9.68175 -9.20627 -8.92690 -8.86228 -8.45055 -8.09504 -6.12286 -4.29931 1.27250 2.38459 2.70626 3.38148 3.41078 3.49002 3.66563 4.20688 4.28352 4.44268 4.48335 4.53473 4.62623 4.72499 4.81323 4.89554 5.02101 5.02686 5.07205 5.17997 5.19494 5.22878 5.32327 5.39532 5.43326 5.47152 5.54895 5.59417 5.67458 5.73082 5.78275 5.86876 5.97144 6.05839 6.21319 6.24594 6.35310 6.40769 6.64622 6.73600 6.98348 7.12207 7.21158 7.36717 7.47551 7.81299 7.92787 8.22042 8.81072 9.49384 10.94582 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002995 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.547139 B = 9345.466032 C =10074.111491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.509 3.491 3 O -0.543 6.543 4 N -0.614 5.614 5 C 0.100 3.900 6 C -0.135 4.135 7 C -0.117 4.117 8 C -0.108 4.108 9 H 0.084 0.916 10 C 0.123 3.877 11 N -1.141 6.141 12 S 2.630 3.370 13 O -0.975 6.975 14 O -0.941 6.941 15 C -0.563 4.563 16 C 0.051 3.949 17 C -0.556 4.556 18 H 0.070 0.930 19 C 0.102 3.898 20 N -0.862 5.862 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.266 1.266 25 C -0.139 4.139 26 C -0.206 4.206 27 C 0.111 3.889 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.410 0.590 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.266 0.734 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.887 -10.450 -4.487 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.298 3.702 3 O -0.420 6.420 4 N -0.348 5.348 5 C -0.023 4.023 6 C -0.173 4.173 7 C -0.155 4.155 8 C -0.129 4.129 9 H 0.103 0.897 10 C -0.004 4.004 11 N -0.898 5.898 12 S 2.727 3.273 13 O -0.965 6.965 14 O -0.931 6.931 15 C -0.695 4.695 16 C 0.049 3.951 17 C -0.593 4.593 18 H 0.088 0.912 19 C -0.106 4.106 20 N -0.495 5.495 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.190 1.190 25 C -0.178 4.178 26 C -0.243 4.243 27 C -0.011 4.011 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.244 0.756 40 H 0.141 0.859 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.114 0.886 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.110 -9.626 -3.762 23.504 hybrid contribution 0.128 0.639 -0.288 0.713 sum -20.983 -8.987 -4.050 23.183 Atomic orbital electron populations 1.22036 0.92002 1.04449 1.05340 1.20829 0.90624 0.83140 0.75576 1.90757 1.70568 1.31001 1.49629 1.48176 1.07522 1.06154 1.72947 1.21940 0.97395 0.83948 0.99010 1.21924 0.96643 0.99871 0.98896 1.21558 0.94701 0.96257 1.02985 1.21731 0.94964 0.96453 0.99738 0.89746 1.21212 0.92457 0.85809 1.00940 1.56269 1.32408 1.13424 1.87673 1.04431 0.71585 0.74728 0.76591 1.93459 1.85658 1.65204 1.52189 1.93548 1.83372 1.32138 1.84043 1.30010 1.11159 1.08858 1.19493 1.18132 0.85443 0.93254 0.98262 1.20624 1.47317 0.99320 0.92071 0.91178 1.24893 0.92945 0.97517 0.95290 1.69942 1.44640 1.18183 1.16779 0.86658 0.79627 0.79745 0.82347 1.19924 1.20907 1.19027 1.22486 1.01593 1.01557 0.92147 1.23155 1.04839 0.92756 1.03526 1.21710 0.79260 1.02016 0.98107 0.89921 0.88726 0.88798 0.89044 0.91041 0.91265 0.90363 0.91168 0.90767 0.91955 0.89884 0.75627 0.85934 0.88640 0.92420 0.89421 0.91778 0.91506 0.89806 0.88601 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 10.08 36.01 0.36 -0.73 16 2 C 0.51 5.53 7.79 -10.98 -0.09 5.44 16 3 O -0.54 -8.61 16.54 5.56 0.09 -8.51 16 4 N -0.61 -5.59 2.97 -172.77 -0.51 -6.10 16 5 C 0.10 0.53 6.36 -3.71 -0.02 0.51 16 6 C -0.14 -0.71 6.08 -26.61 -0.16 -0.87 16 7 C -0.12 -0.81 5.17 -26.69 -0.14 -0.95 16 8 C -0.11 -1.05 2.44 -90.50 -0.22 -1.27 16 9 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 10 C 0.12 1.49 5.53 -4.04 -0.02 1.46 16 11 N -1.14 -17.85 5.77 -10.61 -0.06 -17.92 16 12 S 2.63 56.56 4.38 -107.50 -0.47 56.09 16 13 O -0.97 -22.98 17.50 -57.54 -1.01 -23.99 16 14 O -0.94 -24.22 17.17 -57.54 -0.99 -25.21 16 15 C -0.56 -11.82 6.28 37.16 0.23 -11.58 16 16 C 0.05 1.26 1.87 -155.66 -0.29 0.97 16 17 C -0.56 -15.56 6.56 -34.44 -0.23 -15.79 16 18 H 0.07 2.01 7.82 -52.49 -0.41 1.60 16 19 C 0.10 2.88 5.37 -17.82 -0.10 2.78 16 20 N -0.86 -24.46 12.62 55.43 0.70 -23.76 16 21 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.14 -3.23 9.09 -26.73 -0.24 -3.47 16 26 C -0.21 -4.48 9.88 -26.73 -0.26 -4.75 16 27 C 0.11 1.17 5.50 -3.71 -0.02 1.15 16 28 H 0.08 0.28 5.17 -51.93 -0.27 0.01 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.29 5.06 -51.93 -0.26 0.03 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.03 7.69 -51.93 -0.40 0.63 16 39 H 0.41 6.04 7.45 -34.47 -0.26 5.78 16 40 H 0.12 2.56 8.14 -51.93 -0.42 2.14 16 41 H 0.10 1.62 7.88 -51.92 -0.41 1.21 16 42 H 0.27 7.24 8.32 -40.82 -0.34 6.90 16 43 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 46 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 47 H 0.10 1.24 5.96 -51.93 -0.31 0.93 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -36.89 393.19 -10.33 -47.21 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.79 Total: 5.96 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -1.20 Total: -27.09 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.12 Total: -47.78 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -1.90 Total: -57.71 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 56.56 SS G_CDS: -0.47 Total: 56.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.89 -10.33 -47.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463633675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.629 kcal (2) G-P(sol) polarization free energy of solvation -36.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds