Wall clock time and date at job start Sat Apr 11 2020 07:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21278 * 119.99671 * 2 1 4 4 N 1.34774 * 119.99846 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.63430 * 5.59643 * 4 2 1 6 6 C 1.53195 * 108.77815 * 233.63213 * 5 4 2 7 7 C 1.53039 * 109.33799 * 305.37895 * 6 5 4 8 8 C 1.53041 * 109.53921 * 61.31644 * 7 6 5 9 9 H 1.09008 * 109.49491 * 58.64658 * 8 7 6 10 10 C 1.52994 * 109.49745 * 178.71574 * 8 7 6 11 11 N 1.46507 * 109.47047 * 184.93558 * 10 8 7 12 12 S 1.65603 * 119.99873 * 164.99895 * 11 10 8 13 13 O 1.42103 * 104.27494 * 308.92946 * 12 11 10 14 14 O 1.42100 * 104.27423 * 181.07026 * 12 11 10 15 15 C 1.81397 * 104.44800 * 65.00196 * 12 11 10 16 16 C 1.53002 * 109.46954 * 185.10477 * 15 12 11 17 17 C 1.50706 * 115.56027 * 330.46961 * 16 15 12 18 18 H 1.07997 * 119.99981 * 89.37993 * 17 16 15 19 19 C 1.37878 * 119.99738 * 269.37981 * 17 16 15 20 20 N 1.31508 * 120.00163 * 5.04466 * 19 17 16 21 21 Si 1.86801 * 119.99644 * 185.05125 * 19 17 16 22 22 H 1.48498 * 109.47286 * 60.00021 * 21 19 17 23 23 H 1.48500 * 109.47001 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46940 * 299.99924 * 21 19 17 25 25 C 1.53001 * 117.50061 * 184.77877 * 16 15 12 26 26 C 1.52998 * 117.49958 * 116.15599 * 16 15 12 27 27 C 1.46924 * 120.63010 * 185.62086 * 4 2 1 28 28 H 1.09002 * 109.46749 * 185.47335 * 1 2 3 29 29 H 1.08994 * 109.47093 * 305.47787 * 1 2 3 30 30 H 1.09003 * 109.46411 * 65.47780 * 1 2 3 31 31 H 1.09003 * 109.58696 * 353.42160 * 5 4 2 32 32 H 1.09000 * 109.58691 * 113.83887 * 5 4 2 33 33 H 1.08999 * 109.49777 * 65.31627 * 6 5 4 34 34 H 1.09004 * 109.49448 * 185.41084 * 6 5 4 35 35 H 1.08997 * 109.43015 * 301.31340 * 7 6 5 36 36 H 1.08993 * 109.48350 * 181.35080 * 7 6 5 37 37 H 1.08995 * 109.47481 * 64.93670 * 10 8 7 38 38 H 1.08995 * 109.47107 * 304.93452 * 10 8 7 39 39 H 0.96999 * 119.99913 * 345.00296 * 11 10 8 40 40 H 1.08990 * 109.47459 * 65.10406 * 15 12 11 41 41 H 1.09004 * 109.46987 * 305.09903 * 15 12 11 42 42 H 0.96999 * 120.00424 * 174.99880 * 20 19 17 43 43 H 1.09001 * 117.49651 * 145.02025 * 25 16 15 44 44 H 1.09003 * 117.49370 * 0.02562 * 25 16 15 45 45 H 1.09002 * 117.50037 * 0.02562 * 26 16 15 46 46 H 1.08997 * 117.49986 * 214.98128 * 26 16 15 47 47 H 1.09005 * 109.58664 * 6.58092 * 27 4 2 48 48 H 1.08999 * 109.70426 * 246.22821 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4656 -2.4446 -0.1222 6 6 1.8746 -3.3526 1.0419 7 6 3.3989 -3.4860 1.0692 8 6 4.0295 -2.1084 1.2857 9 1 3.6660 -1.6850 2.2221 10 6 5.5519 -2.2473 1.3448 11 7 6.1485 -0.9490 1.6690 12 16 7.7270 -0.8632 2.1624 13 8 7.8179 -1.8153 3.2133 14 8 7.9431 0.5200 2.4062 15 6 8.6821 -1.4124 0.7214 16 6 10.1635 -1.4989 1.0943 17 6 10.6216 -0.5416 2.1642 18 1 10.5743 -0.8307 3.2037 19 6 11.1013 0.7033 1.8160 20 7 11.0669 1.0936 0.5606 21 14 11.8001 1.8353 3.1273 22 1 12.9569 1.1762 3.7850 23 1 12.2447 3.1053 2.4992 24 1 10.7535 2.1245 4.1404 25 6 11.1541 -1.8385 -0.0212 26 6 10.8234 -2.8786 1.0511 27 6 3.6448 -1.1864 0.1244 28 1 -0.3633 -1.0230 0.0980 29 1 -0.3633 0.5964 0.8368 30 1 -0.3632 0.4266 -0.9350 31 1 0.3908 -2.2665 -0.0865 32 1 1.7279 -2.9210 -1.0669 33 1 1.5310 -2.9179 1.9805 34 1 1.4255 -4.3371 0.9105 35 1 3.7439 -3.8983 0.1211 36 1 3.6911 -4.1508 1.8820 37 1 5.9237 -2.5867 0.3781 38 1 5.8210 -2.9726 2.1126 39 1 5.6188 -0.1398 1.5946 40 1 8.5535 -0.6995 -0.0930 41 1 8.3294 -2.3938 0.4042 42 1 11.3365 1.9953 0.3254 43 1 12.1372 -1.3695 0.0189 44 1 10.7505 -1.9998 -1.0208 45 1 10.2023 -3.7246 0.7566 46 1 11.5889 -3.0939 1.7965 47 1 4.0080 -0.1779 0.3227 48 1 4.0869 -1.5587 -0.7997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463633675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:01 Heat of formation + Delta-G solvation = -116.274927 kcal Electronic energy + Delta-G solvation = -29294.439119 eV Core-core repulsion = 25282.898526 eV Total energy + Delta-G solvation = -4011.540593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.23018 -38.89542 -38.52977 -37.81531 -36.68804 -36.41032 -34.10977 -33.75527 -32.18458 -30.45522 -29.90130 -27.52509 -26.52585 -26.14961 -23.08455 -22.91979 -21.79393 -21.34686 -20.13536 -19.95404 -18.55959 -18.28305 -17.95404 -17.25873 -17.05369 -16.90811 -16.48377 -16.41419 -15.79387 -15.67876 -15.46070 -15.12724 -14.90868 -14.41838 -14.32607 -14.18223 -14.09381 -13.94488 -13.70508 -13.42606 -13.10617 -13.03060 -12.98998 -12.92182 -12.78679 -12.77593 -12.45162 -12.44264 -12.07756 -12.01447 -11.86701 -11.83678 -11.61321 -11.57236 -11.44283 -10.93176 -10.78400 -10.53979 -10.30180 -9.91904 -9.65224 -8.25592 -6.45238 -0.40270 1.32400 1.37988 1.43192 1.59561 2.04315 2.19704 2.37452 3.05024 3.13344 3.31473 3.54997 3.64353 3.73372 3.81235 3.92012 4.00471 4.11602 4.14742 4.30978 4.37705 4.40532 4.50733 4.55720 4.62067 4.63781 4.65276 4.69120 4.75385 4.85263 4.86203 4.89901 4.95564 5.01709 5.11174 5.18885 5.19311 5.19940 5.32531 5.42171 5.49028 5.53716 5.64055 5.67218 6.08575 6.19729 6.44066 6.66737 7.16339 7.34519 8.80378 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002995 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.547139 B = 9345.466032 C =10074.111491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.496 3.504 3 O -0.608 6.608 4 N -0.611 5.611 5 C 0.093 3.907 6 C -0.131 4.131 7 C -0.116 4.116 8 C -0.098 4.098 9 H 0.068 0.932 10 C 0.110 3.890 11 N -1.128 6.128 12 S 2.636 3.364 13 O -1.002 7.002 14 O -0.996 6.996 15 C -0.554 4.554 16 C 0.011 3.989 17 C -0.569 4.569 18 H 0.049 0.951 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.921 3.079 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.281 1.281 25 C -0.138 4.138 26 C -0.186 4.186 27 C 0.107 3.893 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.414 0.586 40 H 0.122 0.878 41 H 0.142 0.858 42 H 0.266 0.734 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.111 -13.463 -5.876 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.287 3.713 3 O -0.490 6.490 4 N -0.343 5.343 5 C -0.027 4.027 6 C -0.169 4.169 7 C -0.154 4.154 8 C -0.119 4.119 9 H 0.086 0.914 10 C -0.016 4.016 11 N -0.889 5.889 12 S 2.734 3.266 13 O -0.992 6.992 14 O -0.986 6.986 15 C -0.687 4.687 16 C 0.010 3.990 17 C -0.607 4.607 18 H 0.067 0.933 19 C -0.143 4.143 20 N -0.514 5.514 21 Si 0.746 3.254 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.207 1.207 25 C -0.177 4.177 26 C -0.223 4.223 27 C -0.016 4.016 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.249 0.751 40 H 0.140 0.860 41 H 0.160 0.840 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.338 -12.689 -5.137 27.056 hybrid contribution 0.765 1.475 0.144 1.668 sum -22.573 -11.214 -4.993 25.695 Atomic orbital electron populations 1.22057 0.88159 1.06739 1.05916 1.21755 0.92563 0.82610 0.74383 1.90724 1.72136 1.33346 1.52767 1.48338 1.07058 1.07342 1.71595 1.22289 0.98552 0.82030 0.99859 1.21929 0.95308 1.01215 0.98443 1.21604 0.95852 0.93953 1.03986 1.21640 0.93353 0.98289 0.98617 0.91386 1.21639 0.94025 0.83685 1.02280 1.55768 1.30313 1.15344 1.87436 1.03862 0.72662 0.73197 0.76829 1.93415 1.86546 1.65365 1.53902 1.93471 1.84847 1.35027 1.85241 1.29840 1.08770 1.11492 1.18613 1.18292 0.87523 0.94699 0.98534 1.20802 1.47285 1.00371 0.92218 0.93292 1.25425 0.93538 0.98669 0.96696 1.69976 1.45619 1.18379 1.17429 0.86171 0.79173 0.79348 0.80691 1.18467 1.19481 1.20651 1.22418 1.00032 1.01996 0.93245 1.23237 1.04201 0.92627 1.02193 1.21638 0.80682 1.00386 0.98897 0.86609 0.88605 0.87791 0.86415 0.89443 0.92028 0.87541 0.89609 0.90332 0.89188 0.89908 0.75090 0.86017 0.84006 0.92434 0.91962 0.89538 0.87607 0.90411 0.91989 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.08 71.24 0.72 -0.99 16 2 C 0.50 10.51 7.79 87.66 0.68 11.19 16 3 O -0.61 -20.22 16.54 -3.02 -0.05 -20.27 16 4 N -0.61 -10.13 2.97 -818.90 -2.43 -12.57 16 5 C 0.09 0.63 6.36 86.36 0.55 1.18 16 6 C -0.13 -0.85 6.08 30.67 0.19 -0.67 16 7 C -0.12 -1.21 5.17 30.62 0.16 -1.05 16 8 C -0.10 -1.76 2.44 -10.72 -0.03 -1.79 16 9 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 10 C 0.11 2.45 5.53 86.38 0.48 2.93 16 11 N -1.13 -35.30 5.77 -187.50 -1.08 -36.38 16 12 S 2.64 114.54 4.38 -56.49 -0.25 114.29 16 13 O -1.00 -47.62 17.50 -127.65 -2.23 -49.85 16 14 O -1.00 -53.39 17.17 -127.65 -2.19 -55.58 16 15 C -0.55 -22.44 6.28 71.98 0.45 -21.99 16 16 C 0.01 0.55 1.87 -52.93 -0.10 0.46 16 17 C -0.57 -32.45 6.56 25.60 0.17 -32.28 16 18 H 0.05 2.91 7.82 -2.91 -0.02 2.89 16 19 C 0.06 3.60 5.37 84.66 0.45 4.06 16 20 N -0.88 -50.69 12.62 21.45 0.27 -50.42 16 21 Si 0.92 46.58 29.54 68.60 2.03 48.60 16 22 H -0.26 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.28 -14.78 7.11 99.48 0.71 -14.08 16 25 C -0.14 -6.22 9.09 30.59 0.28 -5.94 16 26 C -0.19 -7.66 9.88 30.59 0.30 -7.36 16 27 C 0.11 2.17 5.50 86.36 0.48 2.64 16 28 H 0.12 0.32 5.17 -2.39 -0.01 0.30 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.12 0.18 5.06 -2.39 -0.01 0.16 16 32 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.89 7.69 -2.39 -0.02 1.87 16 39 H 0.41 12.70 7.45 -96.74 -0.72 11.98 16 40 H 0.12 4.96 8.14 -2.40 -0.02 4.94 16 41 H 0.14 4.28 7.88 -2.39 -0.02 4.27 16 42 H 0.27 14.73 8.32 -92.71 -0.77 13.96 16 43 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 45 H 0.11 3.53 8.03 -2.39 -0.02 3.51 16 46 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 47 H 0.06 1.69 5.96 -2.38 -0.01 1.67 16 48 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -84.91 393.19 -0.93 -85.84 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.24 Total: 25.94 kcal Atomic # 6 Polarization: -54.39 SS G_CDS: 4.78 Total: -49.61 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -3.25 Total: -99.37 kcal Atomic # 8 Polarization: -121.22 SS G_CDS: -4.48 Total: -125.70 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: 114.54 SS G_CDS: -0.25 Total: 114.29 kcal Total: -84.91 -0.93 -85.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463633675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.436 kcal (2) G-P(sol) polarization free energy of solvation -84.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds