Wall clock time and date at job start Sat Apr 11 2020 07:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36250 * 126.39295 * 2 1 4 4 O 1.35203 * 125.01653 * 0.04663 * 3 2 1 5 5 N 1.30918 * 109.97389 * 180.02562 * 3 2 1 6 6 C 1.35556 * 109.71089 * 0.02562 * 5 3 2 7 7 C 1.40019 * 133.26197 * 179.97438 * 6 5 3 8 8 C 1.36212 * 120.08184 * 179.97438 * 7 6 5 9 9 C 1.40157 * 120.49506 * 359.75170 * 8 7 6 10 10 C 1.47506 * 119.95051 * 180.27377 * 9 8 7 11 11 O 1.21599 * 120.00162 * 202.19962 * 10 9 8 12 12 N 1.34773 * 119.99755 * 22.20105 * 10 9 8 13 13 C 1.47425 * 125.65272 * 5.85512 * 12 10 9 14 14 C 1.55122 * 104.72828 * 155.81463 * 13 12 10 15 15 C 1.55164 * 101.48137 * 37.29480 * 14 13 12 16 16 C 1.47023 * 125.64663 * 186.15893 * 12 10 9 17 17 H 1.09002 * 109.88227 * 300.44002 * 16 12 10 18 18 C 1.52994 * 109.88473 * 61.60703 * 16 12 10 19 19 N 1.46506 * 109.47122 * 284.03601 * 18 16 12 20 20 C 1.36935 * 120.00139 * 175.33432 * 19 18 16 21 21 H 1.07996 * 120.00063 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00041 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99753 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00541 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47175 * 59.99274 * 24 22 20 26 26 H 1.48496 * 109.47404 * 180.02562 * 24 22 20 27 27 H 1.48510 * 109.46743 * 300.00184 * 24 22 20 28 28 C 1.39535 * 120.09938 * 0.52011 * 9 8 7 29 29 C 1.38221 * 119.59273 * 359.48490 * 28 9 8 30 30 H 1.09005 * 109.47000 * 269.96902 * 1 2 3 31 31 H 1.08994 * 109.47317 * 29.97525 * 1 2 3 32 32 H 1.08999 * 109.46955 * 149.97532 * 1 2 3 33 33 H 0.96694 * 114.00535 * 89.99943 * 4 3 2 34 34 H 1.07997 * 119.96127 * 0.02562 * 7 6 5 35 35 H 1.08007 * 119.75170 * 180.02562 * 8 7 6 36 36 H 1.09006 * 110.36559 * 274.74750 * 13 12 10 37 37 H 1.09004 * 110.36814 * 37.06115 * 13 12 10 38 38 H 1.08992 * 111.19351 * 279.19239 * 14 13 12 39 39 H 1.09000 * 110.90767 * 155.26858 * 14 13 12 40 40 H 1.09003 * 110.71696 * 205.96772 * 15 14 13 41 41 H 1.09004 * 110.71939 * 82.70129 * 15 14 13 42 42 H 1.09004 * 109.46859 * 44.02674 * 18 16 12 43 43 H 1.08996 * 109.47796 * 164.03128 * 18 16 12 44 44 H 0.96999 * 119.99526 * 355.32259 * 19 18 16 45 45 H 0.97007 * 119.99607 * 179.97438 * 23 22 20 46 46 H 1.08005 * 120.19982 * 179.74848 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2734 1.0968 0.0000 4 8 1.8424 2.3782 0.0009 5 7 3.5292 0.7267 -0.0006 6 6 3.6070 -0.6266 -0.0015 7 6 4.6801 -1.5261 -0.0028 8 6 4.4462 -2.8680 -0.0031 9 6 3.1343 -3.3612 0.0033 10 6 2.8949 -4.8167 0.0091 11 8 1.8327 -5.2597 -0.3835 12 7 3.8534 -5.6555 0.4496 13 6 5.1320 -5.2529 1.0631 14 6 5.5570 -6.4711 1.9244 15 6 5.0997 -7.6550 1.0318 16 6 3.7997 -7.1237 0.3921 17 1 2.9367 -7.4853 0.9512 18 6 3.7104 -7.5845 -1.0641 19 7 2.3502 -7.3662 -1.5628 20 6 2.0542 -7.6156 -2.8763 21 1 2.8236 -7.9729 -3.5447 22 6 0.7654 -7.4093 -3.3486 23 7 -0.1723 -6.9742 -2.5338 24 14 0.3614 -7.7502 -5.1403 25 1 0.6310 -9.1783 -5.4454 26 1 -1.0717 -7.4520 -5.3899 27 1 1.2042 -6.8906 -6.0099 28 6 2.0544 -2.4776 -0.0011 29 6 2.2873 -1.1152 -0.0009 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.7175 2.7507 0.8845 34 1 5.6945 -1.1555 -0.0029 35 1 5.2779 -3.5570 -0.0037 36 1 5.8761 -5.0523 0.2923 37 1 4.9906 -4.3745 1.6928 38 1 5.0348 -6.4786 2.8811 39 1 6.6370 -6.4863 2.0704 40 1 4.8984 -8.5390 1.6370 41 1 5.8455 -7.8718 0.2669 42 1 4.4151 -7.0144 -1.6695 43 1 3.9539 -8.6451 -1.1252 44 1 1.6593 -7.0450 -0.9624 45 1 -1.0729 -6.8297 -2.8640 46 1 1.0428 -2.8560 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482067685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:11 Heat of formation + Delta-G solvation = 22.590393 kcal Electronic energy + Delta-G solvation = -30525.024456 eV Core-core repulsion = 26416.354315 eV Total energy + Delta-G solvation = -4108.670141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.32484 -41.32306 -39.22600 -38.35615 -37.39753 -36.15559 -35.36784 -33.37883 -32.61864 -31.68327 -30.55849 -29.77738 -28.05902 -26.72194 -25.42658 -24.44407 -23.74725 -22.81625 -22.00861 -21.90662 -20.32970 -19.48849 -19.36104 -18.75218 -18.11116 -17.53686 -17.35118 -16.81733 -16.50009 -16.37868 -15.55477 -15.40920 -15.24712 -15.14527 -15.04508 -14.90668 -14.67004 -14.20941 -14.12142 -13.96645 -13.67708 -13.62920 -13.26808 -13.14515 -12.97756 -12.83602 -12.63226 -12.58023 -12.41032 -12.29132 -11.97766 -11.73916 -11.57167 -11.53362 -11.44306 -11.16015 -10.88842 -10.65535 -9.52850 -9.47549 -9.17469 -8.80727 -7.80510 -5.08730 -0.49189 0.30262 1.11072 1.28138 1.40878 1.46017 1.51556 2.03980 2.12325 2.57773 2.58822 2.80424 3.26905 3.46864 3.56638 3.68503 3.72115 3.82365 3.89432 4.06346 4.15045 4.18449 4.26540 4.29546 4.37745 4.46613 4.50685 4.56666 4.61845 4.69493 4.84721 4.87072 4.94507 5.01249 5.06753 5.14431 5.20933 5.23791 5.29865 5.30606 5.46294 5.49593 5.57091 5.62861 5.70556 6.36821 6.51085 6.58580 6.68961 7.33398 7.51392 8.34495 8.62089 9.40904 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009173 B = 0.003836 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.614867 B = 7298.356425 C = 9665.561411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.491 5.491 3 C 0.464 3.536 4 O -0.438 6.438 5 N -0.518 5.518 6 C 0.065 3.935 7 C -0.069 4.069 8 C -0.096 4.096 9 C -0.117 4.117 10 C 0.549 3.451 11 O -0.533 6.533 12 N -0.611 5.611 13 C 0.083 3.917 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.132 3.868 17 H 0.047 0.953 18 C 0.141 3.859 19 N -0.741 5.741 20 C -0.248 4.248 21 H 0.065 0.935 22 C -0.076 4.076 23 N -0.954 5.954 24 Si 0.968 3.032 25 H -0.275 1.275 26 H -0.295 1.295 27 H -0.284 1.284 28 C -0.054 4.054 29 C 0.029 3.971 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.435 0.565 34 H 0.166 0.834 35 H 0.173 0.827 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.013 0.987 43 H 0.027 0.973 44 H 0.389 0.611 45 H 0.243 0.757 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.280 15.111 15.024 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.193 5.193 3 C 0.161 3.839 4 O -0.243 6.243 5 N -0.250 5.250 6 C -0.055 4.055 7 C -0.088 4.088 8 C -0.116 4.116 9 C -0.121 4.121 10 C 0.338 3.662 11 O -0.409 6.409 12 N -0.346 5.346 13 C -0.038 4.038 14 C -0.156 4.156 15 C -0.153 4.153 16 C 0.028 3.972 17 H 0.065 0.935 18 C 0.013 3.987 19 N -0.390 5.390 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.268 4.268 23 N -0.605 5.605 24 Si 0.797 3.203 25 H -0.201 1.201 26 H -0.221 1.221 27 H -0.210 1.210 28 C -0.076 4.076 29 C -0.079 4.079 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.097 0.903 33 H 0.298 0.702 34 H 0.183 0.817 35 H 0.190 0.810 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.031 0.969 43 H 0.045 0.955 44 H 0.229 0.771 45 H 0.052 0.948 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.142 15.522 14.073 24.216 hybrid contribution -2.242 -0.480 -0.762 2.416 sum 9.900 15.042 13.310 22.393 Atomic orbital electron populations 1.22321 0.73764 1.05849 1.05386 1.45775 1.08774 1.04444 1.60286 1.20469 0.83837 0.82134 0.97433 1.84758 1.86116 1.16622 1.36813 1.70598 1.16619 1.11496 1.26331 1.19323 0.92760 0.89617 1.03799 1.20212 0.98329 0.90421 0.99861 1.21538 0.95698 0.95929 0.98457 1.19579 0.94741 0.91449 1.06377 1.18307 0.83533 0.86472 0.77900 1.90899 1.26322 1.77506 1.46193 1.48382 1.19174 1.05942 1.61063 1.23053 0.84065 0.99810 0.96839 1.22866 1.03664 0.91630 0.97464 1.22643 0.93674 0.99388 0.99553 1.21851 1.00048 0.80188 0.95143 0.93521 1.21244 0.87184 0.97029 0.93207 1.43126 1.07791 1.79400 1.08699 1.19562 0.94295 1.35649 0.88518 0.91671 1.25544 0.96347 1.03301 1.01634 1.69971 1.01606 1.53481 1.35414 0.85310 0.76292 0.78117 0.80610 1.20065 1.22141 1.21023 1.19872 0.99406 0.88836 0.99466 1.18463 0.91757 0.88544 1.09170 0.88138 0.86873 0.90348 0.70213 0.81653 0.80987 0.89186 0.88615 0.90236 0.86167 0.88637 0.89153 0.96912 0.95549 0.77118 0.94827 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 11.12 127.77 1.42 2.52 16 2 N -0.49 -11.72 3.23 -655.35 -2.11 -13.83 16 3 C 0.46 10.64 8.98 179.75 1.61 12.25 16 4 O -0.44 -6.45 13.51 -84.83 -1.15 -7.60 16 5 N -0.52 -14.32 11.29 -306.26 -3.46 -17.77 16 6 C 0.06 1.84 7.22 39.61 0.29 2.13 16 7 C -0.07 -1.62 10.03 22.23 0.22 -1.40 16 8 C -0.10 -2.39 7.99 22.26 0.18 -2.21 16 9 C -0.12 -3.93 5.71 -20.06 -0.11 -4.04 16 10 C 0.55 22.42 7.38 86.69 0.64 23.06 16 11 O -0.53 -28.72 13.09 -4.03 -0.05 -28.77 16 12 N -0.61 -19.78 3.06 -791.38 -2.42 -22.20 16 13 C 0.08 1.57 4.96 86.93 0.43 2.01 16 14 C -0.12 -1.67 7.10 32.06 0.23 -1.44 16 15 C -0.11 -2.32 6.44 31.78 0.20 -2.12 16 16 C 0.13 4.48 3.03 45.34 0.14 4.61 16 17 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16 18 C 0.14 6.20 5.61 86.38 0.48 6.68 16 19 N -0.74 -42.90 4.51 -343.46 -1.55 -44.45 16 20 C -0.25 -15.50 9.99 84.03 0.84 -14.66 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 23 N -0.95 -64.89 13.06 21.65 0.28 -64.61 16 24 Si 0.97 50.47 29.55 68.60 2.03 52.50 16 25 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 27 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 28 C -0.05 -1.85 9.57 22.58 0.22 -1.63 16 29 C 0.03 0.85 6.87 38.68 0.27 1.12 16 30 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.11 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.43 1.17 9.06 -74.06 -0.67 0.50 16 34 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.17 3.24 4.33 -2.91 -0.01 3.23 16 36 H 0.09 1.38 6.84 -2.38 -0.02 1.37 16 37 H 0.10 1.53 6.72 -2.38 -0.02 1.52 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 1.67 7.85 -2.38 -0.02 1.65 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 44 H 0.39 24.51 4.88 -92.71 -0.45 24.06 16 45 H 0.24 15.99 8.31 -92.70 -0.77 15.22 16 46 H 0.12 4.34 7.80 -2.91 -0.02 4.32 16 Total: -1.00 -94.81 374.99 -0.99 -95.81 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.08 Total: 28.41 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 7.52 Total: 22.53 kcal Atomic # 7 Polarization: -153.61 SS G_CDS: -9.26 Total: -162.87 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.20 Total: -36.37 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.03 Total: 52.50 kcal Total: -94.81 -0.99 -95.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482067685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.396 kcal (2) G-P(sol) polarization free energy of solvation -94.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds