Wall clock time and date at job start Sat Apr 11 2020 07:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34105 * 125.15786 * 2 1 4 4 C 1.38020 * 107.88432 * 180.12232 * 3 2 1 5 5 C 1.47241 * 126.81694 * 179.87586 * 4 3 2 6 6 O 1.21627 * 120.00343 * 179.68393 * 5 4 3 7 7 N 1.34781 * 119.99860 * 359.67516 * 5 4 3 8 8 C 1.46496 * 120.00141 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47174 * 34.99582 * 8 7 5 10 10 C 1.52999 * 109.47535 * 155.00410 * 8 7 5 11 11 N 1.46506 * 109.46684 * 305.00097 * 10 8 7 12 12 C 1.36938 * 119.99589 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00325 * 359.97438 * 12 11 10 14 14 C 1.38815 * 119.99408 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99480 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00486 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47176 * 89.99661 * 16 14 12 18 18 H 1.48498 * 109.47481 * 209.99740 * 16 14 12 19 19 H 1.48501 * 109.46931 * 329.99788 * 16 14 12 20 20 C 1.53003 * 109.47067 * 275.00498 * 8 7 5 21 21 C 1.52999 * 117.50284 * 128.74645 * 20 8 7 22 22 C 1.53000 * 117.50341 * 60.08237 * 20 8 7 23 23 C 1.46590 * 106.37192 * 359.60644 * 4 3 2 24 24 C 1.48322 * 126.51837 * 180.28072 * 23 4 3 25 25 C 1.46743 * 127.11890 * 144.99902 * 24 23 4 26 26 C 1.34355 * 106.02100 * 179.97438 * 25 24 23 27 27 O 1.34159 * 109.00625 * 359.97438 * 26 25 24 28 28 C 1.34088 * 110.75459 * 359.76309 * 27 26 25 29 29 N 1.31361 * 106.96680 * 0.24237 * 23 4 3 30 30 H 1.09009 * 109.47066 * 270.30815 * 1 2 3 31 31 H 1.09007 * 109.47373 * 30.30349 * 1 2 3 32 32 H 1.09004 * 109.47254 * 150.30438 * 1 2 3 33 33 H 1.08000 * 126.05637 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99548 * 0.02562 * 7 5 4 35 35 H 1.09000 * 109.47486 * 185.00032 * 10 8 7 36 36 H 1.09001 * 109.47362 * 64.99309 * 10 8 7 37 37 H 0.96995 * 120.00050 * 359.72237 * 11 10 8 38 38 H 0.97000 * 120.00111 * 179.97438 * 15 14 12 39 39 H 1.09003 * 115.54519 * 274.41861 * 20 8 7 40 40 H 1.08997 * 117.49686 * 0.02562 * 21 20 8 41 41 H 1.09001 * 117.49714 * 145.01868 * 21 20 8 42 42 H 1.08990 * 117.49958 * 214.98279 * 22 20 8 43 43 H 1.08996 * 117.49399 * 359.97438 * 22 20 8 44 44 H 1.07995 * 126.98489 * 359.97438 * 25 24 23 45 45 H 1.07998 * 125.49536 * 180.02562 * 26 25 24 46 46 H 1.07994 * 125.77938 * 180.26464 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2372 1.0964 0.0000 4 6 3.5551 0.6866 -0.0028 5 6 4.7477 1.5502 -0.0064 6 8 5.8581 1.0538 -0.0028 7 7 4.6089 2.8908 -0.0138 8 6 5.7954 3.7500 -0.0179 9 1 6.5837 3.2781 -0.6043 10 6 5.4420 5.1047 -0.6350 11 7 4.8648 4.8993 -1.9658 12 6 4.4702 5.9759 -2.7145 13 1 4.5841 6.9763 -2.3238 14 6 3.9238 5.7813 -3.9757 15 7 3.5440 6.8160 -4.6951 16 14 3.7262 4.0510 -4.6512 17 1 2.3952 3.5177 -4.2647 18 1 3.8360 4.0821 -6.1318 19 1 4.7902 3.1777 -4.0941 20 6 6.2815 3.9551 1.4183 21 6 7.7588 3.6835 1.7097 22 6 6.6880 2.7112 2.2110 23 6 3.5321 -0.7791 0.0051 24 6 4.7101 -1.6804 0.0113 25 6 4.8302 -2.9761 0.6896 26 6 6.0666 -3.4248 0.4155 27 8 6.6956 -2.5274 -0.3584 28 6 5.8987 -1.4801 -0.6154 29 7 2.2698 -1.1427 0.0065 30 1 -0.3634 0.0055 1.0277 31 1 -0.3634 0.8873 -0.5186 32 1 -0.3634 -0.8927 -0.5091 33 1 1.8894 2.1189 -0.0004 34 1 3.7233 3.2866 -0.0164 35 1 6.3434 5.7117 -0.7196 36 1 4.7181 5.6156 0.0000 37 1 4.7663 4.0011 -2.3184 38 1 3.1626 6.6801 -5.5765 39 1 5.8013 4.7662 1.9658 40 1 8.3844 3.3592 0.8782 41 1 8.2503 4.3157 2.4492 42 1 6.4756 2.7041 3.2800 43 1 6.6086 1.7468 1.7095 44 1 4.0778 -3.4686 1.2875 45 1 6.4861 -4.3579 0.7616 46 1 6.1586 -0.6215 -1.2165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483577128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:16 Heat of formation + Delta-G solvation = 103.863425 kcal Electronic energy + Delta-G solvation = -30393.721733 eV Core-core repulsion = 26288.575855 eV Total energy + Delta-G solvation = -4105.145878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.31059 -41.15407 -39.52434 -37.10545 -35.17571 -34.18740 -33.51229 -32.16883 -31.48430 -30.46440 -29.67779 -28.37205 -26.80742 -24.13015 -23.29470 -22.25629 -22.09739 -21.39457 -21.29433 -20.46237 -19.93545 -19.46137 -18.19750 -17.61704 -17.06504 -16.25533 -15.94850 -15.75735 -15.70930 -15.30267 -14.93178 -14.84868 -14.41316 -14.10817 -13.76633 -13.53744 -13.27711 -13.22068 -12.93824 -12.81758 -12.76793 -12.57890 -12.30711 -12.16057 -11.90537 -11.27746 -11.25453 -11.06917 -10.99631 -10.92206 -10.33071 -10.23389 -10.14312 -9.94964 -9.66235 -9.62339 -9.31492 -8.98158 -8.87475 -8.65051 -8.25683 -7.31174 -5.83106 -3.19216 1.41345 1.49785 2.03734 2.16155 2.87661 3.13780 3.29805 3.33654 3.38132 3.41592 3.57251 4.10017 4.20426 4.32865 4.53209 4.66119 4.77000 4.83677 4.85993 5.08538 5.11922 5.12344 5.18011 5.23216 5.31635 5.37533 5.41141 5.45666 5.51576 5.65267 5.77633 5.85642 5.88586 5.91684 6.11642 6.21273 6.23442 6.31764 6.40608 6.43902 6.51378 6.58467 6.62130 6.85371 7.15672 7.43876 7.79738 7.92837 8.35553 8.48495 9.14642 9.86756 10.06305 11.35092 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.004106 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.788530 B = 6817.716848 C = 8112.526731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.365 5.365 3 C 0.108 3.892 4 C -0.285 4.285 5 C 0.599 3.401 6 O -0.547 6.547 7 N -0.709 5.709 8 C 0.167 3.833 9 H 0.090 0.910 10 C 0.153 3.847 11 N -0.755 5.755 12 C -0.245 4.245 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.932 5.932 16 Si 0.880 3.120 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.163 4.163 21 C -0.171 4.171 22 C -0.183 4.183 23 C 0.207 3.793 24 C -0.140 4.140 25 C -0.188 4.188 26 C -0.051 4.051 27 O -0.181 6.181 28 C 0.053 3.947 29 N -0.289 5.289 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.187 0.813 34 H 0.400 0.600 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.119 0.881 44 H 0.149 0.851 45 H 0.201 0.799 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -16.477 14.748 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.042 4.042 4 C -0.300 4.300 5 C 0.387 3.613 6 O -0.427 6.427 7 N -0.359 5.359 8 C 0.063 3.937 9 H 0.108 0.892 10 C 0.025 3.975 11 N -0.401 5.401 12 C -0.375 4.375 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.580 5.580 16 Si 0.711 3.289 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.202 1.202 20 C -0.183 4.183 21 C -0.208 4.208 22 C -0.220 4.220 23 C 0.038 3.962 24 C -0.143 4.143 25 C -0.207 4.207 26 C -0.117 4.117 27 O -0.076 6.076 28 C -0.018 4.018 29 N -0.110 5.110 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.204 0.796 34 H 0.234 0.766 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.167 0.833 45 H 0.218 0.782 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.725 -17.571 14.569 22.891 hybrid contribution -0.639 -0.050 -0.417 0.764 sum -2.364 -17.621 14.153 22.724 Atomic orbital electron populations 1.22014 0.73525 1.05176 1.03784 1.48097 1.07168 1.03344 1.55735 1.23062 0.90629 0.93707 0.96792 1.21281 0.92621 0.92843 1.23268 1.17059 0.87446 0.81547 0.75219 1.90610 1.26088 1.74274 1.51742 1.45863 1.10229 1.05231 1.74549 1.20849 0.87755 0.91580 0.93525 0.89210 1.20903 0.97334 0.92388 0.86876 1.42713 1.76198 1.05797 1.15421 1.19050 1.33436 0.88013 0.97017 0.89094 1.24644 1.00963 0.96424 0.96790 1.69695 1.47824 1.28297 1.12190 0.86613 0.77898 0.85763 0.78653 1.21232 1.21658 1.20243 1.22615 0.98151 1.00563 0.96962 1.22893 0.91231 1.03279 1.03414 1.23270 1.03112 0.96400 0.99219 1.20783 0.90068 0.89781 0.95532 1.18823 0.92849 0.95761 1.06911 1.22720 0.97961 0.95380 1.04676 1.23778 0.93150 0.95852 0.98952 1.83942 1.41850 1.26614 1.55237 1.24636 0.88024 0.89618 0.99490 1.77361 1.01317 1.06450 1.25835 0.90293 0.88798 0.88925 0.79606 0.76570 0.93830 0.94887 0.80405 0.93010 0.87873 0.88736 0.89267 0.90062 0.86256 0.83345 0.78203 0.76527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.39 59.85 0.68 1.33 16 2 N -0.36 -4.22 3.95 -67.64 -0.27 -4.48 16 3 C 0.11 1.26 10.94 -16.64 -0.18 1.08 16 4 C -0.29 -4.11 6.31 -102.95 -0.65 -4.76 16 5 C 0.60 9.16 7.14 -12.60 -0.09 9.07 16 6 O -0.55 -9.13 10.06 5.25 0.05 -9.07 16 7 N -0.71 -10.23 4.49 -54.94 -0.25 -10.48 16 8 C 0.17 2.56 2.43 -67.93 -0.17 2.40 16 9 H 0.09 1.54 7.33 -51.93 -0.38 1.16 16 10 C 0.15 2.73 5.80 -4.04 -0.02 2.70 16 11 N -0.76 -16.93 5.24 -59.90 -0.31 -17.24 16 12 C -0.25 -6.67 10.47 -15.06 -0.16 -6.82 16 13 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 14 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 15 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 16 Si 0.88 21.81 27.74 -169.99 -4.72 17.09 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 19 H -0.28 -6.64 6.51 56.52 0.37 -6.28 16 20 C -0.16 -2.16 5.36 -90.62 -0.49 -2.65 16 21 C -0.17 -2.14 10.18 -26.69 -0.27 -2.41 16 22 C -0.18 -2.43 9.74 -26.69 -0.26 -2.69 16 23 C 0.21 3.14 7.34 -80.55 -0.59 2.55 16 24 C -0.14 -2.05 6.07 -103.17 -0.63 -2.68 16 25 C -0.19 -2.30 11.15 -37.52 -0.42 -2.71 16 26 C -0.05 -0.55 12.04 29.36 0.35 -0.19 16 27 O -0.18 -2.38 10.55 6.67 0.07 -2.31 16 28 C 0.05 0.76 10.28 29.88 0.31 1.07 16 29 N -0.29 -4.18 12.50 34.58 0.43 -3.75 16 30 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.09 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.19 1.56 7.48 -52.49 -0.39 1.17 16 34 H 0.40 5.25 7.56 -40.82 -0.31 4.94 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.36 8.16 5.20 -40.82 -0.21 7.95 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 40 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.12 1.84 5.01 -51.93 -0.26 1.58 16 44 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 46 H 0.22 3.18 6.36 -52.49 -0.33 2.84 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -34.78 385.94 -7.19 -41.98 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -6.12 Total: 14.89 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.67 Total: -4.60 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 0.38 Total: -63.80 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.12 Total: -11.38 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.78 -7.19 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483577128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.841 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds