Wall clock time and date at job start Sat Apr 11 2020 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34105 * 125.15786 * 2 1 4 4 C 1.38020 * 107.88432 * 180.12232 * 3 2 1 5 5 C 1.47241 * 126.81694 * 179.87586 * 4 3 2 6 6 O 1.21627 * 120.00343 * 179.68393 * 5 4 3 7 7 N 1.34781 * 119.99860 * 359.67516 * 5 4 3 8 8 C 1.46496 * 120.00141 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47174 * 34.99582 * 8 7 5 10 10 C 1.52999 * 109.47535 * 155.00410 * 8 7 5 11 11 N 1.46506 * 109.46684 * 305.00097 * 10 8 7 12 12 C 1.36938 * 119.99589 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00325 * 359.97438 * 12 11 10 14 14 C 1.38815 * 119.99408 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99480 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00486 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47176 * 89.99661 * 16 14 12 18 18 H 1.48498 * 109.47481 * 209.99740 * 16 14 12 19 19 H 1.48501 * 109.46931 * 329.99788 * 16 14 12 20 20 C 1.53003 * 109.47067 * 275.00498 * 8 7 5 21 21 C 1.52999 * 117.50284 * 128.74645 * 20 8 7 22 22 C 1.53000 * 117.50341 * 60.08237 * 20 8 7 23 23 C 1.46590 * 106.37192 * 359.60644 * 4 3 2 24 24 C 1.48322 * 126.51837 * 180.28072 * 23 4 3 25 25 C 1.46743 * 127.11890 * 144.99902 * 24 23 4 26 26 C 1.34355 * 106.02100 * 179.97438 * 25 24 23 27 27 O 1.34159 * 109.00625 * 359.97438 * 26 25 24 28 28 C 1.34088 * 110.75459 * 359.76309 * 27 26 25 29 29 N 1.31361 * 106.96680 * 0.24237 * 23 4 3 30 30 H 1.09009 * 109.47066 * 270.30815 * 1 2 3 31 31 H 1.09007 * 109.47373 * 30.30349 * 1 2 3 32 32 H 1.09004 * 109.47254 * 150.30438 * 1 2 3 33 33 H 1.08000 * 126.05637 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99548 * 0.02562 * 7 5 4 35 35 H 1.09000 * 109.47486 * 185.00032 * 10 8 7 36 36 H 1.09001 * 109.47362 * 64.99309 * 10 8 7 37 37 H 0.96995 * 120.00050 * 359.72237 * 11 10 8 38 38 H 0.97000 * 120.00111 * 179.97438 * 15 14 12 39 39 H 1.09003 * 115.54519 * 274.41861 * 20 8 7 40 40 H 1.08997 * 117.49686 * 0.02562 * 21 20 8 41 41 H 1.09001 * 117.49714 * 145.01868 * 21 20 8 42 42 H 1.08990 * 117.49958 * 214.98279 * 22 20 8 43 43 H 1.08996 * 117.49399 * 359.97438 * 22 20 8 44 44 H 1.07995 * 126.98489 * 359.97438 * 25 24 23 45 45 H 1.07998 * 125.49536 * 180.02562 * 26 25 24 46 46 H 1.07994 * 125.77938 * 180.26464 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2372 1.0964 0.0000 4 6 3.5551 0.6866 -0.0028 5 6 4.7477 1.5502 -0.0064 6 8 5.8581 1.0538 -0.0028 7 7 4.6089 2.8908 -0.0138 8 6 5.7954 3.7500 -0.0179 9 1 6.5837 3.2781 -0.6043 10 6 5.4420 5.1047 -0.6350 11 7 4.8648 4.8993 -1.9658 12 6 4.4702 5.9759 -2.7145 13 1 4.5841 6.9763 -2.3238 14 6 3.9238 5.7813 -3.9757 15 7 3.5440 6.8160 -4.6951 16 14 3.7262 4.0510 -4.6512 17 1 2.3952 3.5177 -4.2647 18 1 3.8360 4.0821 -6.1318 19 1 4.7902 3.1777 -4.0941 20 6 6.2815 3.9551 1.4183 21 6 7.7588 3.6835 1.7097 22 6 6.6880 2.7112 2.2110 23 6 3.5321 -0.7791 0.0051 24 6 4.7101 -1.6804 0.0113 25 6 4.8302 -2.9761 0.6896 26 6 6.0666 -3.4248 0.4155 27 8 6.6956 -2.5274 -0.3584 28 6 5.8987 -1.4801 -0.6154 29 7 2.2698 -1.1427 0.0065 30 1 -0.3634 0.0055 1.0277 31 1 -0.3634 0.8873 -0.5186 32 1 -0.3634 -0.8927 -0.5091 33 1 1.8894 2.1189 -0.0004 34 1 3.7233 3.2866 -0.0164 35 1 6.3434 5.7117 -0.7196 36 1 4.7181 5.6156 0.0000 37 1 4.7663 4.0011 -2.3184 38 1 3.1626 6.6801 -5.5765 39 1 5.8013 4.7662 1.9658 40 1 8.3844 3.3592 0.8782 41 1 8.2503 4.3157 2.4492 42 1 6.4756 2.7041 3.2800 43 1 6.6086 1.7468 1.7095 44 1 4.0778 -3.4686 1.2875 45 1 6.4861 -4.3579 0.7616 46 1 6.1586 -0.6215 -1.2165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483577128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:15 Heat of formation + Delta-G solvation = 80.424973 kcal Electronic energy + Delta-G solvation = -30394.738100 eV Core-core repulsion = 26288.575855 eV Total energy + Delta-G solvation = -4106.162245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.27424 -42.11825 -40.67597 -38.27769 -36.71666 -35.18157 -34.89213 -33.41568 -32.97574 -31.63840 -30.60054 -29.78679 -27.64711 -25.78465 -24.45832 -23.23187 -23.08558 -22.95046 -22.30355 -21.53739 -21.03036 -20.48611 -19.81284 -18.89951 -18.13143 -17.36122 -16.91294 -16.80053 -16.69151 -16.54411 -16.31605 -16.05435 -15.81895 -15.28618 -14.97439 -14.77049 -14.64443 -14.49181 -13.97174 -13.87123 -13.74319 -13.64999 -13.51326 -13.39348 -13.05773 -12.90002 -12.66259 -12.51690 -12.25751 -12.12695 -11.98656 -11.83326 -11.32272 -11.19499 -11.07180 -11.00577 -10.74228 -10.26436 -9.97206 -9.69437 -9.30138 -9.23863 -8.02426 -5.34972 0.43081 0.48344 1.12822 1.33944 1.36674 1.39165 1.44361 1.84743 2.19608 2.21767 2.45980 2.48050 3.06345 3.29088 3.30486 3.46021 3.47459 3.88536 3.92644 4.05403 4.08887 4.12698 4.18489 4.19955 4.34695 4.40458 4.44091 4.47564 4.55804 4.61084 4.65249 4.68006 4.87463 4.94007 4.95548 5.09232 5.14033 5.20358 5.29032 5.34229 5.44496 5.49944 5.62109 5.78228 5.83084 6.19522 6.21372 6.44605 6.69402 7.07963 7.35892 7.83591 8.02102 9.19073 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.004106 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.788530 B = 6817.716848 C = 8112.526731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.359 5.359 3 C 0.121 3.879 4 C -0.315 4.315 5 C 0.597 3.403 6 O -0.566 6.566 7 N -0.706 5.706 8 C 0.180 3.820 9 H 0.069 0.931 10 C 0.154 3.846 11 N -0.755 5.755 12 C -0.227 4.227 13 H 0.065 0.935 14 C -0.054 4.054 15 N -0.981 5.981 16 Si 0.944 3.056 17 H -0.270 1.270 18 H -0.301 1.301 19 H -0.268 1.268 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.182 4.182 23 C 0.187 3.813 24 C -0.156 4.156 25 C -0.207 4.207 26 C -0.033 4.033 27 O -0.190 6.190 28 C 0.034 3.966 29 N -0.310 5.310 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.221 0.779 34 H 0.407 0.593 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.364 0.636 38 H 0.257 0.743 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.162 0.838 45 H 0.246 0.754 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -17.814 16.468 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.137 5.137 3 C -0.030 4.030 4 C -0.330 4.330 5 C 0.387 3.613 6 O -0.448 6.448 7 N -0.356 5.356 8 C 0.075 3.925 9 H 0.087 0.913 10 C 0.027 3.973 11 N -0.401 5.401 12 C -0.358 4.358 13 H 0.083 0.917 14 C -0.246 4.246 15 N -0.631 5.631 16 Si 0.772 3.228 17 H -0.196 1.196 18 H -0.228 1.228 19 H -0.193 1.193 20 C -0.182 4.182 21 C -0.203 4.203 22 C -0.219 4.219 23 C 0.019 3.981 24 C -0.159 4.159 25 C -0.227 4.227 26 C -0.099 4.099 27 O -0.086 6.086 28 C -0.037 4.037 29 N -0.132 5.132 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.238 0.762 34 H 0.243 0.757 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.197 0.803 38 H 0.066 0.934 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.129 0.871 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.179 0.821 45 H 0.262 0.738 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.580 -18.939 16.339 25.146 hybrid contribution -0.395 0.380 -0.861 1.021 sum -2.975 -18.559 15.478 24.349 Atomic orbital electron populations 1.22448 0.70769 1.06616 1.05622 1.48515 1.08628 1.02581 1.54004 1.23539 0.89708 0.95042 0.94677 1.21300 0.93425 0.92572 1.25720 1.17223 0.87607 0.81678 0.74835 1.90607 1.26988 1.74615 1.52547 1.45758 1.10243 1.04949 1.74643 1.20575 0.87566 0.89904 0.94463 0.91319 1.21030 0.97169 0.94100 0.84982 1.42698 1.76175 1.04570 1.16691 1.19044 1.31501 0.88207 0.97035 0.91743 1.25316 1.01850 0.99997 0.97429 1.69855 1.49977 1.30638 1.12668 0.85585 0.78690 0.81369 0.77121 1.19566 1.22769 1.19342 1.22548 0.98895 1.01120 0.95604 1.22973 0.90818 1.02997 1.03467 1.23168 1.03661 0.95319 0.99720 1.21005 0.90501 0.90417 0.96168 1.19156 0.92894 0.96787 1.07103 1.22954 0.99202 0.94930 1.05610 1.24643 0.92472 0.96091 0.96673 1.83934 1.42080 1.26775 1.55787 1.24425 0.88513 0.90161 1.00585 1.77284 1.01367 1.08070 1.26432 0.88245 0.86299 0.88592 0.76241 0.75704 0.94075 0.93377 0.80251 0.93374 0.86254 0.89699 0.87096 0.88594 0.88518 0.82073 0.73772 0.77725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 11.39 127.77 1.46 2.34 16 2 N -0.36 -7.54 3.95 -367.91 -1.45 -8.99 16 3 C 0.12 2.57 10.94 84.29 0.92 3.50 16 4 C -0.32 -8.88 6.31 -18.78 -0.12 -9.00 16 5 C 0.60 18.09 7.14 86.61 0.62 18.71 16 6 O -0.57 -19.32 10.06 -4.12 -0.04 -19.36 16 7 N -0.71 -19.50 4.49 -445.98 -2.00 -21.50 16 8 C 0.18 5.31 2.43 44.99 0.11 5.42 16 9 H 0.07 2.35 7.33 -2.39 -0.02 2.33 16 10 C 0.15 5.28 5.80 86.38 0.50 5.79 16 11 N -0.76 -33.07 5.24 -343.44 -1.80 -34.87 16 12 C -0.23 -12.29 10.47 84.03 0.88 -11.41 16 13 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 14 C -0.05 -3.08 5.50 84.86 0.47 -2.62 16 15 N -0.98 -61.11 13.97 21.65 0.30 -60.81 16 16 Si 0.94 44.97 27.74 68.60 1.90 46.87 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 19 H -0.27 -12.23 6.51 99.48 0.65 -11.58 16 20 C -0.16 -4.01 5.36 -10.79 -0.06 -4.06 16 21 C -0.17 -3.87 10.18 30.62 0.31 -3.56 16 22 C -0.18 -4.58 9.74 30.62 0.30 -4.28 16 23 C 0.19 5.67 7.34 44.08 0.32 5.99 16 24 C -0.16 -4.64 6.07 -18.92 -0.11 -4.75 16 25 C -0.21 -4.94 11.15 23.61 0.26 -4.67 16 26 C -0.03 -0.66 12.04 66.93 0.81 0.14 16 27 O -0.19 -4.96 10.55 0.97 0.01 -4.95 16 28 C 0.03 1.00 10.28 67.27 0.69 1.69 16 29 N -0.31 -8.72 12.50 -44.51 -0.56 -9.27 16 30 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.12 0.69 8.13 -2.38 -0.02 0.67 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.22 2.90 7.48 -2.91 -0.02 2.88 16 34 H 0.41 9.84 7.56 -92.71 -0.70 9.14 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.36 15.86 5.20 -92.71 -0.48 15.38 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.12 2.61 8.11 -2.39 -0.02 2.59 16 40 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 41 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.10 2.98 5.01 -2.39 -0.01 2.97 16 44 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 45 H 0.25 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.21 6.42 6.36 -2.91 -0.02 6.41 16 Total: -1.00 -77.02 385.94 3.51 -73.51 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -0.21 Total: 40.15 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 7.36 Total: -0.78 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -5.51 Total: -135.44 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.03 Total: -24.31 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Total: -77.02 3.51 -73.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483577128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.932 kcal (2) G-P(sol) polarization free energy of solvation -77.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds