Wall clock time and date at job start Sat Apr 11 2020 07:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42906 * 109.47256 * 2 1 4 4 C 1.42901 * 114.00110 * 184.33905 * 3 2 1 5 5 H 1.09003 * 109.47025 * 10.13760 * 4 3 2 6 6 C 1.50690 * 109.46990 * 130.13301 * 4 3 2 7 7 O 1.21288 * 120.00341 * 3.05020 * 6 4 3 8 8 N 1.34783 * 120.00259 * 183.04379 * 6 4 3 9 9 C 1.46493 * 120.00287 * 174.79114 * 8 6 4 10 10 C 1.53496 * 114.20760 * 205.00207 * 9 8 6 11 11 N 1.47071 * 87.98616 * 220.14697 * 10 9 8 12 12 C 1.34773 * 136.05631 * 207.08419 * 11 10 9 13 13 O 1.21282 * 119.99956 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99673 * 180.02562 * 12 11 10 15 15 S 1.81007 * 109.46711 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99700 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00184 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99880 * 179.72395 * 16 15 14 19 19 N 1.31628 * 119.99980 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99687 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47236 * 90.00007 * 20 18 16 22 22 H 1.48502 * 109.46789 * 209.99489 * 20 18 16 23 23 H 1.48498 * 109.47402 * 329.99724 * 20 18 16 24 24 C 1.47071 * 87.88312 * 27.34029 * 11 10 9 25 25 C 1.53001 * 109.47075 * 250.13733 * 4 3 2 26 26 C 1.53003 * 109.47084 * 302.48942 * 25 4 3 27 27 C 1.52996 * 109.47180 * 62.48639 * 25 4 3 28 28 H 1.08998 * 109.46785 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46775 * 299.99986 * 1 2 3 30 30 H 1.08994 * 109.46683 * 59.99876 * 1 2 3 31 31 H 1.09002 * 109.47048 * 240.00333 * 2 1 3 32 32 H 1.08999 * 109.47375 * 120.00253 * 2 1 3 33 33 H 0.97004 * 119.99436 * 354.79391 * 8 6 4 34 34 H 1.09005 * 113.28250 * 338.07179 * 9 8 6 35 35 H 1.08995 * 113.46999 * 105.36352 * 10 9 8 36 36 H 1.09003 * 113.46720 * 334.92625 * 10 9 8 37 37 H 1.09000 * 109.47271 * 59.99951 * 14 12 11 38 38 H 1.08996 * 109.47336 * 299.99619 * 14 12 11 39 39 H 0.96998 * 120.00146 * 180.02562 * 19 18 16 40 40 H 1.08997 * 113.46702 * 87.43767 * 24 11 10 41 41 H 1.08992 * 113.46491 * 217.87438 * 24 11 10 42 42 H 1.08996 * 109.46670 * 182.49038 * 25 4 3 43 43 H 1.08995 * 109.46909 * 64.23901 * 26 25 4 44 44 H 1.08995 * 109.46912 * 184.24371 * 26 25 4 45 45 H 1.09007 * 109.46980 * 304.24535 * 26 25 4 46 46 H 1.09007 * 109.46837 * 58.03257 * 27 25 4 47 47 H 1.08996 * 109.47282 * 178.02568 * 27 25 4 48 48 H 1.09000 * 109.47400 * 298.02895 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4275 1.4614 -0.0988 5 1 3.8546 0.4869 -0.3354 6 6 3.7782 2.4414 -1.1884 7 8 2.8986 3.0299 -1.7810 8 7 5.0693 2.6642 -1.5045 9 6 5.4073 3.5287 -2.6379 10 6 6.7798 3.2405 -3.2618 11 7 6.9663 4.6933 -3.3953 12 6 7.6598 5.5117 -4.2112 13 8 8.3410 5.0467 -5.1004 14 6 7.5896 7.0046 -4.0178 15 16 8.6219 7.8229 -5.2593 16 6 8.3602 9.5072 -4.8127 17 1 7.7142 9.7516 -3.9825 18 6 8.9893 10.5195 -5.5241 19 7 8.7942 11.7777 -5.1902 20 14 10.1126 10.0963 -6.9553 21 1 9.3192 10.0472 -8.2096 22 1 11.1693 11.1324 -7.0782 23 1 10.7424 8.7730 -6.7158 24 6 6.0682 4.8595 -2.2426 25 6 3.9932 1.9563 1.2339 26 6 3.3473 3.2950 1.5965 27 6 3.6908 0.9311 2.3285 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.7747 2.2521 -0.9815 34 1 4.5985 3.6254 -3.3622 35 1 6.7215 2.7207 -4.2181 36 1 7.4818 2.7745 -2.5703 37 1 7.9499 7.2593 -3.0211 38 1 6.5573 7.3370 -4.1269 39 1 9.2335 12.4852 -5.6876 40 1 6.5826 4.8202 -1.2824 41 1 5.4037 5.7189 -2.3305 42 1 5.0718 2.0855 1.1450 43 1 2.2792 3.1508 1.7590 44 1 3.8041 3.6842 2.5064 45 1 3.4984 4.0038 0.7821 46 1 4.1213 -0.0319 2.0534 47 1 4.1241 1.2669 3.2706 48 1 2.6116 0.8277 2.4414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530439940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:51 Heat of formation + Delta-G solvation = -85.573311 kcal Electronic energy + Delta-G solvation = -27585.366716 eV Core-core repulsion = 23575.157445 eV Total energy + Delta-G solvation = -4010.209271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.04126 -40.03790 -38.34210 -37.50233 -35.46207 -34.05788 -32.44600 -31.58122 -30.55621 -28.51798 -27.62258 -26.99925 -26.18607 -25.58710 -23.26883 -22.46457 -21.56142 -20.51365 -19.23024 -17.91673 -17.71820 -17.39896 -16.90851 -16.66869 -16.37403 -15.67495 -15.31072 -15.05408 -14.91932 -14.83737 -14.49515 -14.22523 -13.99944 -13.51626 -13.48248 -13.03547 -12.91238 -12.86275 -12.83196 -12.78316 -12.65738 -12.52303 -12.49620 -11.96476 -11.87059 -11.61395 -11.48593 -11.36524 -11.26979 -11.21438 -11.01311 -10.63483 -10.49979 -9.88645 -9.76687 -9.61336 -9.43093 -9.01091 -8.79981 -8.52480 -6.93951 -6.29313 -4.01740 2.17758 2.23443 2.63456 2.88060 3.10091 3.32956 3.39447 3.49806 3.56410 3.96187 4.13737 4.16991 4.31734 4.33181 4.40395 4.54675 4.60971 4.64687 4.68876 4.79350 4.88933 4.89490 4.99181 5.04461 5.09630 5.12048 5.20500 5.24883 5.29528 5.36171 5.41446 5.46974 5.48348 5.57418 5.59621 5.71529 5.74304 5.76702 5.77879 5.98008 6.00090 6.05521 6.59793 7.03745 7.65592 7.81481 7.93668 8.33289 8.41475 9.16524 10.79859 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.001818 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.390469 B =15394.452288 C =15669.043214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.078 3.922 5 H 0.089 0.911 6 C 0.511 3.489 7 O -0.510 6.510 8 N -0.718 5.718 9 C 0.112 3.888 10 C 0.098 3.902 11 N -0.648 5.648 12 C 0.566 3.434 13 O -0.513 6.513 14 C -0.116 4.116 15 S -0.141 6.141 16 C -0.522 4.522 17 H 0.089 0.911 18 C 0.096 3.904 19 N -0.879 5.879 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.086 3.914 25 C -0.104 4.104 26 C -0.145 4.145 27 C -0.148 4.148 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.403 0.597 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 -27.827 17.304 35.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.267 6.267 4 C 0.016 3.984 5 H 0.107 0.893 6 C 0.296 3.704 7 O -0.383 6.383 8 N -0.372 5.372 9 C 0.006 3.994 10 C -0.026 4.026 11 N -0.387 5.387 12 C 0.355 3.645 13 O -0.387 6.387 14 C -0.266 4.266 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.107 0.893 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.039 4.039 25 C -0.123 4.123 26 C -0.202 4.202 27 C -0.205 4.205 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.238 0.762 34 H 0.150 0.850 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.000 -27.579 15.346 33.766 hybrid contribution 0.299 0.289 0.755 0.862 sum -11.701 -27.290 16.101 33.777 Atomic orbital electron populations 1.21730 0.93365 1.02259 1.03512 1.22700 0.96126 0.83499 1.00062 1.88054 1.18296 1.26335 1.93994 1.22038 0.84392 0.98200 0.93770 0.89309 1.20773 0.82536 0.83083 0.84027 1.90763 1.47389 1.48022 1.52126 1.45794 1.07578 1.50930 1.32936 1.22904 0.97211 0.90097 0.89189 1.23217 0.93864 0.83980 1.01548 1.49279 1.49630 1.07495 1.32342 1.19884 0.76965 0.87660 0.79945 1.90722 1.39045 1.76954 1.31961 1.23219 1.05708 0.92254 1.05422 1.84782 1.60688 1.04265 1.41755 1.22301 1.34923 0.88410 1.21272 0.89329 1.24709 0.95597 0.94029 0.96946 1.69936 1.42480 0.98848 1.40304 0.86735 0.81448 0.80645 0.83026 1.19163 1.19895 1.15944 1.23550 0.90933 0.99146 0.90257 1.21509 1.00004 0.97321 0.93463 1.21758 1.01778 0.95243 1.01444 1.21857 1.02530 0.97946 0.98205 0.91052 0.91738 0.91541 0.93322 0.92998 0.76243 0.84960 0.89595 0.89695 0.88459 0.88379 0.91913 0.89418 0.89433 0.89921 0.91499 0.92419 0.92508 0.92730 0.91904 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.30 6.09 37.16 0.23 0.53 16 3 O -0.35 -2.98 8.36 -55.12 -0.46 -3.44 16 4 C 0.08 0.50 2.37 -27.89 -0.07 0.44 16 5 H 0.09 0.36 7.60 -51.93 -0.39 -0.04 16 6 C 0.51 4.57 5.98 -10.99 -0.07 4.51 16 7 O -0.51 -7.05 16.14 -14.34 -0.23 -7.28 16 8 N -0.72 -4.58 5.32 -53.49 -0.28 -4.87 16 9 C 0.11 0.97 4.59 -67.68 -0.31 0.66 16 10 C 0.10 0.92 8.38 -8.50 -0.07 0.85 16 11 N -0.65 -8.69 3.69 -185.05 -0.68 -9.37 16 12 C 0.57 10.49 8.10 -10.99 -0.09 10.40 16 13 O -0.51 -11.41 16.64 5.56 0.09 -11.32 16 14 C -0.12 -2.31 5.98 36.01 0.22 -2.10 16 15 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 16 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 17 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 18 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 19 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16 20 Si 0.86 21.90 27.74 -169.99 -4.71 17.18 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 24 C 0.09 0.84 8.25 -8.36 -0.07 0.77 16 25 C -0.10 -0.52 2.73 -90.62 -0.25 -0.76 16 26 C -0.14 -1.01 8.82 37.16 0.33 -0.68 16 27 C -0.15 -0.58 8.44 37.16 0.31 -0.27 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.05 0.21 6.99 -51.93 -0.36 -0.15 16 33 H 0.40 1.29 8.19 -40.82 -0.33 0.96 16 34 H 0.13 1.40 7.51 -51.93 -0.39 1.00 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.60 8.13 -51.93 -0.42 0.17 16 37 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 38 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.27 7.57 -51.93 -0.39 -0.13 16 43 H 0.07 0.54 7.76 -51.93 -0.40 0.14 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.49 7.16 -51.93 -0.37 0.12 16 46 H 0.05 0.15 8.14 -51.92 -0.42 -0.27 16 47 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 48 H 0.06 0.30 7.02 -51.93 -0.36 -0.06 16 LS Contribution 408.78 15.07 6.16 6.16 Total: -1.00 -37.62 408.78 -8.66 -46.28 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -8.08 Total: -3.63 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 0.76 Total: 1.78 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.19 Total: -40.11 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.60 Total: -22.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.62 -8.66 -46.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530439940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.295 kcal (2) G-P(sol) polarization free energy of solvation -37.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds