Wall clock time and date at job start Sat Apr 11 2020 07:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42906 * 109.47256 * 2 1 4 4 C 1.42901 * 114.00110 * 184.33905 * 3 2 1 5 5 H 1.09003 * 109.47025 * 10.13760 * 4 3 2 6 6 C 1.50690 * 109.46990 * 130.13301 * 4 3 2 7 7 O 1.21288 * 120.00341 * 3.05020 * 6 4 3 8 8 N 1.34783 * 120.00259 * 183.04379 * 6 4 3 9 9 C 1.46493 * 120.00287 * 174.79114 * 8 6 4 10 10 C 1.53496 * 114.20760 * 205.00207 * 9 8 6 11 11 N 1.47071 * 87.98616 * 220.14697 * 10 9 8 12 12 C 1.34773 * 136.05631 * 207.08419 * 11 10 9 13 13 O 1.21282 * 119.99956 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99673 * 180.02562 * 12 11 10 15 15 S 1.81007 * 109.46711 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99700 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00184 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99880 * 179.72395 * 16 15 14 19 19 N 1.31628 * 119.99980 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99687 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47236 * 90.00007 * 20 18 16 22 22 H 1.48502 * 109.46789 * 209.99489 * 20 18 16 23 23 H 1.48498 * 109.47402 * 329.99724 * 20 18 16 24 24 C 1.47071 * 87.88312 * 27.34029 * 11 10 9 25 25 C 1.53001 * 109.47075 * 250.13733 * 4 3 2 26 26 C 1.53003 * 109.47084 * 302.48942 * 25 4 3 27 27 C 1.52996 * 109.47180 * 62.48639 * 25 4 3 28 28 H 1.08998 * 109.46785 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46775 * 299.99986 * 1 2 3 30 30 H 1.08994 * 109.46683 * 59.99876 * 1 2 3 31 31 H 1.09002 * 109.47048 * 240.00333 * 2 1 3 32 32 H 1.08999 * 109.47375 * 120.00253 * 2 1 3 33 33 H 0.97004 * 119.99436 * 354.79391 * 8 6 4 34 34 H 1.09005 * 113.28250 * 338.07179 * 9 8 6 35 35 H 1.08995 * 113.46999 * 105.36352 * 10 9 8 36 36 H 1.09003 * 113.46720 * 334.92625 * 10 9 8 37 37 H 1.09000 * 109.47271 * 59.99951 * 14 12 11 38 38 H 1.08996 * 109.47336 * 299.99619 * 14 12 11 39 39 H 0.96998 * 120.00146 * 180.02562 * 19 18 16 40 40 H 1.08997 * 113.46702 * 87.43767 * 24 11 10 41 41 H 1.08992 * 113.46491 * 217.87438 * 24 11 10 42 42 H 1.08996 * 109.46670 * 182.49038 * 25 4 3 43 43 H 1.08995 * 109.46909 * 64.23901 * 26 25 4 44 44 H 1.08995 * 109.46912 * 184.24371 * 26 25 4 45 45 H 1.09007 * 109.46980 * 304.24535 * 26 25 4 46 46 H 1.09007 * 109.46837 * 58.03257 * 27 25 4 47 47 H 1.08996 * 109.47282 * 178.02568 * 27 25 4 48 48 H 1.09000 * 109.47400 * 298.02895 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4275 1.4614 -0.0988 5 1 3.8546 0.4869 -0.3354 6 6 3.7782 2.4414 -1.1884 7 8 2.8986 3.0299 -1.7810 8 7 5.0693 2.6642 -1.5045 9 6 5.4073 3.5287 -2.6379 10 6 6.7798 3.2405 -3.2618 11 7 6.9663 4.6933 -3.3953 12 6 7.6598 5.5117 -4.2112 13 8 8.3410 5.0467 -5.1004 14 6 7.5896 7.0046 -4.0178 15 16 8.6219 7.8229 -5.2593 16 6 8.3602 9.5072 -4.8127 17 1 7.7142 9.7516 -3.9825 18 6 8.9893 10.5195 -5.5241 19 7 8.7942 11.7777 -5.1902 20 14 10.1126 10.0963 -6.9553 21 1 9.3192 10.0472 -8.2096 22 1 11.1693 11.1324 -7.0782 23 1 10.7424 8.7730 -6.7158 24 6 6.0682 4.8595 -2.2426 25 6 3.9932 1.9563 1.2339 26 6 3.3473 3.2950 1.5965 27 6 3.6908 0.9311 2.3285 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.7747 2.2521 -0.9815 34 1 4.5985 3.6254 -3.3622 35 1 6.7215 2.7207 -4.2181 36 1 7.4818 2.7745 -2.5703 37 1 7.9499 7.2593 -3.0211 38 1 6.5573 7.3370 -4.1269 39 1 9.2335 12.4852 -5.6876 40 1 6.5826 4.8202 -1.2824 41 1 5.4037 5.7189 -2.3305 42 1 5.0718 2.0855 1.1450 43 1 2.2792 3.1508 1.7590 44 1 3.8041 3.6842 2.5064 45 1 3.4984 4.0038 0.7821 46 1 4.1213 -0.0319 2.0534 47 1 4.1241 1.2669 3.2706 48 1 2.6116 0.8277 2.4414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530439940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:50 Heat of formation + Delta-G solvation = -112.541971 kcal Electronic energy + Delta-G solvation = -27586.536165 eV Core-core repulsion = 23575.157445 eV Total energy + Delta-G solvation = -4011.378720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.88460 -40.88954 -39.28779 -38.49531 -35.95760 -34.83216 -34.69694 -32.05217 -31.90789 -29.51579 -28.06220 -27.94470 -27.69049 -27.00878 -23.71990 -23.29512 -22.21357 -21.06348 -20.53349 -19.58753 -18.51632 -18.14709 -18.02764 -17.46043 -17.20884 -16.92244 -16.83647 -16.31994 -15.93858 -15.75836 -15.40934 -15.24717 -14.94128 -14.71961 -14.55678 -14.24606 -13.95000 -13.87849 -13.63360 -13.37013 -13.27836 -13.23733 -13.21331 -13.02969 -13.02321 -12.90479 -12.69511 -12.31979 -12.26334 -12.04824 -11.88653 -11.85217 -11.62617 -11.21714 -11.19312 -11.03814 -10.59672 -10.28563 -10.18951 -9.89436 -9.04410 -8.53682 -6.25917 0.88270 1.30410 1.35534 1.40898 1.48575 1.50147 1.70937 2.10348 2.23280 2.62459 2.84301 2.90209 3.17204 3.42322 3.62126 3.73760 3.79292 3.90636 3.99341 4.14472 4.18035 4.23019 4.28974 4.35810 4.38903 4.47041 4.50468 4.51909 4.56052 4.69455 4.74807 4.82205 4.85820 4.87820 4.99781 5.04562 5.05562 5.19813 5.28689 5.36291 5.41879 5.48532 5.68275 6.08744 6.14452 6.41959 6.54849 6.90740 6.95479 7.19930 8.58764 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.001818 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.390469 B =15394.452288 C =15669.043214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.379 6.379 4 C 0.078 3.922 5 H 0.122 0.878 6 C 0.509 3.491 7 O -0.567 6.567 8 N -0.696 5.696 9 C 0.126 3.874 10 C 0.103 3.897 11 N -0.648 5.648 12 C 0.568 3.432 13 O -0.559 6.559 14 C -0.103 4.103 15 S -0.170 6.170 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.046 3.954 19 N -0.915 5.915 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.257 1.257 23 H -0.236 1.236 24 C 0.083 3.917 25 C -0.099 4.099 26 C -0.144 4.144 27 C -0.145 4.145 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.423 0.577 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.278 0.722 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.346 -30.773 18.810 37.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.298 6.298 4 C 0.017 3.983 5 H 0.139 0.861 6 C 0.297 3.703 7 O -0.444 6.444 8 N -0.352 5.352 9 C 0.019 3.981 10 C -0.020 4.020 11 N -0.385 5.385 12 C 0.357 3.643 13 O -0.437 6.437 14 C -0.254 4.254 15 S 0.057 5.943 16 C -0.679 4.679 17 H 0.079 0.921 18 C -0.160 4.160 19 N -0.553 5.553 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.181 1.181 23 H -0.160 1.160 24 C -0.040 4.040 25 C -0.118 4.118 26 C -0.202 4.202 27 C -0.203 4.203 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.262 0.738 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.975 -30.570 16.928 36.627 hybrid contribution -0.193 1.120 0.453 1.223 sum -11.168 -29.451 17.382 35.975 Atomic orbital electron populations 1.21762 0.93707 1.03218 1.02262 1.22870 0.96015 0.82648 1.01328 1.88036 1.19634 1.28045 1.94072 1.22212 0.83901 0.98814 0.93392 0.86097 1.21378 0.82398 0.82708 0.83864 1.90747 1.49114 1.50282 1.54252 1.45546 1.07598 1.49920 1.32091 1.22462 0.96239 0.89951 0.89458 1.23507 0.94684 0.81389 1.02417 1.49136 1.47959 1.09392 1.32019 1.19376 0.77415 0.87167 0.80384 1.90698 1.41526 1.77399 1.34111 1.23168 1.04699 0.93595 1.03911 1.84654 1.62658 1.02442 1.44583 1.22439 1.34324 0.90667 1.20486 0.92096 1.25579 0.96998 0.93937 0.99443 1.70014 1.43700 0.99853 1.41742 0.85856 0.79967 0.80711 0.79767 1.18722 1.18068 1.15970 1.23874 0.90377 0.99519 0.90250 1.21555 1.01114 0.96213 0.92908 1.21737 1.01007 0.96289 1.01120 1.21835 1.01997 0.98466 0.97959 0.88991 0.92245 0.93507 0.92735 0.90817 0.73754 0.87092 0.89980 0.85884 0.87027 0.87638 0.91281 0.86167 0.90196 0.87263 0.93408 0.91333 0.94650 0.90823 0.91364 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.47 6.09 71.98 0.44 0.91 16 3 O -0.38 -6.12 8.36 -129.96 -1.09 -7.21 16 4 C 0.08 0.82 2.37 29.85 0.07 0.89 16 5 H 0.12 0.47 7.60 -2.39 -0.02 0.45 16 6 C 0.51 8.31 5.98 87.65 0.52 8.83 16 7 O -0.57 -15.82 16.14 15.97 0.26 -15.56 16 8 N -0.70 -6.79 5.32 -441.52 -2.35 -9.14 16 9 C 0.13 1.90 4.59 45.55 0.21 2.11 16 10 C 0.10 1.62 8.38 83.18 0.70 2.32 16 11 N -0.65 -16.09 3.69 -857.78 -3.16 -19.25 16 12 C 0.57 20.54 8.10 87.66 0.71 21.25 16 13 O -0.56 -24.67 16.64 -3.04 -0.05 -24.72 16 14 C -0.10 -4.09 5.98 71.24 0.43 -3.66 16 15 S -0.17 -8.78 18.55 -56.49 -1.05 -9.83 16 16 C -0.53 -31.49 10.04 67.96 0.68 -30.81 16 17 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 18 C 0.05 2.73 5.50 84.86 0.47 3.20 16 19 N -0.92 -56.22 13.97 21.65 0.30 -55.92 16 20 Si 0.92 45.34 27.74 68.60 1.90 47.24 16 21 H -0.26 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 24 C 0.08 1.43 8.25 83.27 0.69 2.12 16 25 C -0.10 -0.69 2.73 -10.79 -0.03 -0.72 16 26 C -0.14 -1.85 8.82 71.98 0.63 -1.21 16 27 C -0.15 -0.67 8.44 71.98 0.61 -0.06 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.46 8.09 -2.39 -0.02 0.44 16 32 H 0.07 0.39 6.99 -2.39 -0.02 0.38 16 33 H 0.42 0.71 8.19 -92.71 -0.76 -0.04 16 34 H 0.11 2.28 7.51 -2.38 -0.02 2.27 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.12 1.11 8.13 -2.39 -0.02 1.09 16 37 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 38 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 39 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.11 0.19 7.57 -2.39 -0.02 0.17 16 43 H 0.05 0.78 7.76 -2.39 -0.02 0.76 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.03 0.59 7.16 -2.38 -0.02 0.58 16 46 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 47 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 48 H 0.05 0.38 7.02 -2.39 -0.02 0.36 16 Total: -1.00 -85.61 408.78 1.78 -83.82 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.15 Total: 6.23 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.86 Total: 4.33 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -5.21 Total: -84.30 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.88 Total: -47.49 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -85.61 1.78 -83.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530439940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.720 kcal (2) G-P(sol) polarization free energy of solvation -85.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds